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Volume 16, Number 24,
Issue of December 15, 1996
pp. 7832-7840
Copyright ©1996 Society for Neuroscience
Thyroid Hormone-Responsive Genes in Developing Cerebellum Include
a Novel Synaptotagmin and a hairless Homolog
Catherine C. Thompson
Department of Embryology, Carnegie Institution of Washington,
Baltimore, Maryland 21210
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
REFERENCES
ABSTRACT
Proper development of the mammalian CNS requires sufficient thyroid
hormone; thyroid hormone deficiency during a brief perinatal period
produces severe neurological defects in humans and experimental animals. Thyroid hormone exerts its effects through nuclear receptors, which modulate the transcription of downstream genes in response to
hormone binding. Surprisingly, few genes that are regulated by thyroid
hormone receptors in the CNS have been described. Here, I report the
isolation and characterization of genes that are expressed in response
to thyroid hormone in developing rat brain. One such gene
(Srg1) encodes a novel protein related to synaptotagmin, a protein involved in regulating neurotransmitter release; another (hr) encodes a putative zinc finger protein related to
the product of a recently identified mouse gene,
hairless. Both Srg1 and hr are induced rapidly (<4 hr), suggesting that they are regulated directly by thyroid hormone. The temporal and spatial expression of
both Srg1 and hr is characteristic of
genes important to nervous system development. Srg1 and
hr are likely part of a cascade of gene activation
induced by thyroid hormone that is critical for CNS organization and
development.
Key words:
cerebellum;
development;
synaptotagmin;
hairless;
thyroid hormone;
nuclear receptor
INTRODUCTION
Thyroid hormone is essential for proper
development of the mammalian CNS. In humans, inadequate levels of
thyroid hormone during a critical perinatal period lead to a complex of
deficits (termed cretinism), which include severe mental retardation
and cerebellar ataxia (DeLong and Adams, 1991 ). Restoration of thyroid hormone to physiological levels within a brief postnatal period can
restore normal development; after this time, the damage caused by
thyroid hormone deficiency is irreversible (Eayrs, 1968 ; Morreale de
Escobar et al., 1983 ; Schwartz, 1983 ). Studies in the rat have revealed
multiple morphological, biochemical, and behavioral abnormalities associated with low levels of thyroid hormone. Morphological defects include reduction in dendritic branching, axonal density, and synapse
number (Morreale de Escobar et al., 1983 ; Schwartz, 1983 ). Reduction in
overall myelination is also observed and may be caused by delayed
differentiation of oligodendrocytes (Barres et al., 1994 ).
The effects of thyroid hormone are mediated via the action of specific
nuclear receptor proteins that function as ligand-activated transcription factors (Oppenheimer, 1991 ; Tsai and O'Malley, 1994 ; Mangelsdorf et al., 1995 ). The finding that thyroid hormone receptors are present in the developing brain suggests that, as in other tissues,
thyroid hormone in the brain exerts its effects by regulating the
expression of specific genes (TH-responsive genes), yet little is known
about the genes regulated by these receptors. Identification and
functional characterization of target genes is critical, because such
genes encode downstream effectors of receptor action. Of the many genes
expressed in the developing nervous system, expression of only a few
has been shown to be influenced by thyroid hormone (Farsetti et al.,
1991 ; Munoz et al., 1991 ; Pipaon et al., 1992 ; Strait et al., 1992 ).
Given the widespread effects of thyroid hormone deficiency on CNS
development, it is likely that additional genes regulated by thyroid
hormone remain to be discovered.
I have used subtractive hybridization coupled with PCR amplification to
screen for TH-responsive genes expressed in rat brain within a critical
developmental stage (postnatal days 10-15) and a specific region of
the brain (cerebellum). Cerebellum was selected because it develops
postnatally, at which time thyroid hormone is required, and striking
effects of thyroid hormone deficiency on the cerebellum have been
described (Nicholson and Altman, 1972a ,b; Legrand, 1979 ). Several
TH-responsive genes have been identified; two novel responsive genes
with homology to classes of important regulatory proteins have been
characterized. One gene (Srg1) encodes a novel protein
related to synaptotagmin(s), a family of
Ca2+/phospholipid-binding proteins primarily found in the
brain, at least one of which has a role in neurotransmitter release
(Bennett and Scheller, 1994 ; Sudhof, 1995 ). Another gene identified in this screen encodes a putative zinc finger protein, likely the rat
homolog of a recently identified mouse gene, hairless
(Cachon-Gonzalez et al., 1994 ). The first step in characterizing these
genes with respect to their potential role in neural development has
entailed determination of kinetics and developmental and
tissue-specific patterns of expression. Based on temporal and spatial
patterns of expression, both Srg1 and hr have
properties of genes likely to be involved in nervous system
development. The results of kinetic analysis suggest that hr
and Srg1 are among the first direct-response genes for
thyroid hormone identified in the nervous system.
MATERIALS AND METHODS
Animal care and treatment. Timed pregnant rats
(Sprague Dawley) were obtained from Harlan Sprague Dawley
(Indianapolis, IN). So that hyperthyroidism could be induced, pregnant
rats were fed a low iodine diet (Purina Mills) and 0.025% methimazole
(Sigma, St. Louis, MO) in their drinking water, starting at day 13 of gestation (E13) and continuing throughout the period of study. Methimazole blocks the synthesis of thyroid hormone in the mother and
fetuses and, after birth, the pups (via nursing). For all experiments,
the form of thyroid hormone used was L-T3
(3,5,3 -triiodothyronine; Sigma). The efficacy of methimazole treatment
in reducing T3 levels was confirmed by direct measurement
of serum T3 by RIA (Amersham, Arlington Heights, IL) and
assessment of growth hormone (GH) RNA levels in the anterior pituitary
(see Fig. 1). Hypothyroid pups received daily subcutaneous injection of
either saline (control) or 0.25 µg/gm body weight of T3.
Treatment with hormone was for 48 hr. Injection of saline had no effect
on serum T3 or GH levels. Injection of T3
raised serum T3 to slightly hyperthyroid levels (5-10 vs
1-2 nM) and restored GH expression to approximately
euthyroid levels. For experiments with adult animals, animals were 10 weeks old; hypothyroid adults were treated with methimazole
continuously from E13. Equal numbers of males and females were used for
all experiments.
Fig. 1.
Isolation of novel thyroid hormone-responsive
genes from developing rat brain. A, Influence of thyroid
hormone on expression of rat growth hormone (GH)
mRNA in methimazole-treated rats. RNA prepared from the pituitaries of
12-d-old rats was used for Northern analysis with a radiolabeled rGH
cDNA probe. hypothyroid, Methimazole-treated; euthyroid, untreated; control,
hypothyroid animals injected with saline; TH-treated,
hypothyroid animals injected with thyroid hormone. Thyroid hormone
treatment was for 24 hr. Top panel, Autoradiograph of
Northern blot; bottom panel, ethidium bromide-stained
gel. B, Northern analysis for two novel thyroid
hormone-responsive genes (TRG16 and
TRG37). A cDNA fragment isolated from the
subtracted library is the probe; total RNA (15 µg per lane) prepared
from cerebellum of hypothyroid P12 rats injected with saline or thyroid hormone for 48 hr was used. Right panel, Ethidium
bromide-stained gel indicates equivalent loading and positions of 18S
and 28S RNAs.
[View Larger Version of this Image (63K GIF file)]
Construction of subtractive library. A cDNA library enriched
for genes upregulated by thyroid hormone was constructed via subtractive hybridization/PCR amplification essentially as described (Wang and Brown, 1991 ). The starting material was 2 µg of
poly(A+) RNA from the cerebella of 12-d-old hypothyroid
animals injected with either saline (control) or T3
(TH-treated), as described above. cDNA synthesized from RNA isolated
from TH-treated and control rats was digested with AluI,
ligated to specific linkers (Wang and Brown, 1991 ), and amplified by
PCR. Amplified material from the control cDNA was digested with
EcoRI to cleave the PCR primer site and biotinylated with
photoprobe biotin (Vector Laboratories, Burlingame, CA). Twenty-fold
excess control cDNA was hybridized with TH-treated cDNA, followed by
removal of biotinylated cDNA with streptavidin to eliminate
control/TH-treated hybrids as well as unhybridized control cDNA. The
remaining material was PCR-amplified, and the procedure was repeated
two times. The final pool of cDNA was amplified, cloned into
pBluescript (Stratagene, La Jolla, CA), and transformed into bacterial
strain DH5 . DNA was prepared from individual colonies, digested with
EcoRI to excise the cDNA insert, and separated by agarose
gel electrophoresis. These gels were used for Southern analysis with
the final pool of cDNA as probe. Approximately 30% of the colonies
gave a detectable hybridization signal; these represented the most
abundant members of the library and therefore those most enriched and
likely to be TH-responsive. To confirm that isolates corresponded to
TH-responsive genes, I used the cDNA inserts from positive clones as
probes for Northern analysis of RNA prepared from control and
TH-treated hypothyroid P12 rats. Fragments from six different
TH-responsive genes were isolated. The two genes chosen for further
study on the basis of their kinetics and expression patterns
(TRG16 and TRG37) are described; the other
genes have not been characterized further.
RNA preparation/Northern analysis. Animals were killed by
decapitation, and tissues were removed and frozen in dry ice. RNA was
prepared with acid/phenol as described (Chomczynski and Sacchi, 1987 ).
Poly(A+) RNA was selected by using oligo-dT-coupled
magnetic beads (Promega, Madison, WI) or oligo-dT cellulose
chromatography (Sambrook et al., 1989 ). For Northern analysis, RNA
samples were separated on 1% agarose/formaldehyde gels and transferred
to nitrocellulose. Radiolabeled probes were prepared by random priming
(Feinberg and Vogelstein, 1984 ). Unless specified otherwise, the probe
for hr was a 2.2 HindIII fragment from nucleotide
position 2245 to 3771 of the rat hr cDNA; the probe for
Srg1 was from nucleotide position 253 to 2071 of the cDNA.
Ethidium bromide staining was used to assure that equivalent amounts of
RNA were loaded per lane; filters were checked after blotting to
confirm equivalent transfer of RNA. The probe for detecting TR 1 was
an HphI-XbaI fragment from rbeA12 (Thompson et
al., 1987 ) corresponding to the unique C terminus of TR 1 and
included 250 bp of 3 untranslated region. The probe for detecting
TR 1 was a HindIII-XbaI fragment from
rc-erbA 1 (Murray et al., 1988 ; kindly provided by H. Towle, University of Minnesota) corresponding to the unique N terminus of
TR 1. The probe for rat growth hormone was an EcoRI
fragment from the rGH cDNA (kindly provided by R. Evans, Salk
Institute).
Isolation of full-length cDNA clones. An oligo-dT-primed
cDNA library was constructed in lambda UNI-ZAP (Stratagene) under conditions recommended by the manufacturer. The starting material was
RNA from the cerebella of hypothyroid P12 animals treated with thyroid
hormone for 48 hr. The library was screened by using cDNA fragments
isolated from the subtractive library as probes.
For TRG16 (Srg1), 10 different cDNAs were
isolated; two contained the entire open reading frame. Six isolates
differed by a deletion of 57 nucleotides between positions 196 and 253. Five isolates were 800 bp longer at the 3 end, likely attributable to
internal priming of a stretch of consecutive T residues beginning at
nucleotide 2063. For TRG37 (hr), four different
cDNAs were isolated; the largest of these was 3.5 kb. To isolate cDNA
encompassing the rest of the rat hr gene, I used a specific
oligonucleotide corresponding to position 1898-1916 in the cDNA
(CT102) to reverse transcribe RNA from cerebellum, followed by 5 RACE
with a nested primer (CT103; Rapid Amplification of cDNA Ends, Life
Technologies, Bethesda, MD) (Frohman et al., 1988 ; Loh et al., 1989 ).
Specificity of the amplified cDNA was confirmed by hybridization with a
nested oligonucleotide (CT104). This resulted in the isolation of an additional 1.4 kb cDNA. Specific oligonucleotides were synthesized to
position 630-650 in the cDNA (CT152) and used for reverse
transcription, followed by 5 RACE (CT153) to isolate an additional 500 bp. Specificity of the amplified cDNA was confirmed by hybridization
with a nested oligonucleotide (CT154). Primers for 5 RACE (nucleotide
positions correspond to the full-length cDNA) included the following:
CT102, 5 -CAGATGTATCCTCAAGTCTG (nt 1898-1916); CT103,
5 -GATTCCCGGAGCCGAATCCT (nt 1877-1897); CT104,
5 -GGCCCTCTTTGCTCCTCTTGTTGCTGTGCC (nt 1837-1866); CT154,
5 -TAGGCACAGTGCCCCATGGT (nt 577-596); CT153,
5 -CCTCCAAAACCCAACAGGTTC (nt 600-621); and CT152,
5 -AGCCAGGAGTCTGGGGCGCTC (nt 630-650). Both 5 RACE products
hybridized to the same size RNA as the original cDNA (data not shown).
The combined size of the overlapping cDNAs was 5.3 kb and contained the
entire open reading frame.
The complete nucleotide sequences for Srg1 and hr
were determined on both strands by the chain termination method
(Sequenase/USB, Cleveland, OH) with either subcloned restriction
fragments or specific oligonucleotides. The complete nucleotide and
amino acid sequences have been submitted to GenBank under accession
numbers U71293[GenBank] (hr) and U71294[GenBank] (Srg1).
Cell culture. GH1 (rat pituitary) cells were obtained from
ATCC (Rockville, MD). Cells were grown in DMEM supplemented with 10%
fetal calf serum. For induction experiments, serum was depleted of
thyroid and steroid hormones by treatment with AG-1-X8 resin (Bio-Rad,
Hercules, CA) and charcoal (Sigma), as described (Samuels et al.,
1979 ). Cells were grown for 2 d in hormone-depleted media; then
thyroid hormone (T3) was added to 10 7
M, and cycloheximide was added to 10 µg/ml. After
treatment for 16 hr, cells were harvested, and RNA was prepared as
described.
In situ hybridization. Animals (P14) were killed by
decapitation, brains were removed, and cerebellum and brain stem were separated from midbrain and forebrain and frozen with dry ice/ethanol in O.C.T. compound embedding medium (Baxter, McGaw Park, IL). Sections
(10 µm) were prepared with a cryostat and transferred to slides
(ProbeOn Plus, Fisher Scientific, Pittsburgh, PA). Sections were stored
at 20°C. 35S-labeled cRNA probes were prepared by
synthesis with either T3 or T7 RNA polymerase in the presence of
35S-UTP (New England Nuclear, Boston, MA). Hybridization
conditions were as described (Simmons et al., 1989 ; Simerly and Young,
1991 ), except that fixation was for 1 hr and proteinase K treatment was for 15 min. Hybridization with sense strand cRNA was used as a negative
control. Autoradiographic images were obtained by direct exposure of
hybridized sections to x-ray film (Amersham Hyperfilm -max). Probe
for hr was from nucleotide 2703 to 5186 of the cDNA; probe for Srg1 spanned nucleotides 783-1574 of the
cDNA.
RESULTS
Isolation of TH-responsive genes from developing rat brain
To identify genes regulated by thyroid hormone in developing
brain, I treated pregnant rats with methimazole to induce
hypothyroidism in their pups (see Materials and Methods). Because the
critical period for thyroid hormone action in rat brain is between
postnatal days 10 and 15, on postnatal day 12 (P12) one-half of the
methimazole-treated pups were injected with thyroid hormone
(TH-treated), the other one-half with saline (control). Treatment with
thyroid hormone was for 48 hr. To demonstrate the efficacy of this
paradigm, I monitored the level of mRNA for a known responsive gene
(growth hormone). Growth hormone mRNA was greatly reduced in the
pituitaries of hypothyroid animals and was restored to euthyroid
(normal) levels after thyroid hormone treatment (Fig.
1A). RNA isolated from the cerebella
of control and TH-treated animals was the starting material for
construction of a cDNA library enriched for genes upregulated by
thyroid hormone. The procedure for preparing the library is based on
subtractive hybridization coupled with PCR amplification (Wang and
Brown, 1991 ; see Materials and Methods). Identification of positive
clones (cDNA fragments originating from TH-responsive genes) was
accomplished by using the isolated fragments as probes for Northern
analysis. Fragments that detected higher expression in RNA from
cerebella of TH-treated animals relative to control animals were judged
to be from TH-responsive genes. Fragments corresponding to six
different TH-responsive genes were isolated. Two genes were
chosen for further study on the basis of their kinetics and expression
patterns (described below); Northern analysis for these genes
(TRG16 and TRG37) is shown in Figure
1B. Low basal level expression is observed for both
TRG16 and TRG37 in hypothyroid cerebellum.
Expression of TRG16 is induced approximately threefold by
thyroid hormone; induction of TRG37 is ~10-fold.
Identification of novel TH-responsive genes
To obtain full-length cDNAs for TRG16 and
TRG37, I constructed a cDNA library, which was then screened
using the isolated cDNA fragments as probes. For TRG37, I
used library screening and 5 RACE to isolate a combined cDNA of 5.3 kb. The open reading frame (ORF) contained within this sequence encodes
a predicted protein of 1207 amino acids. The only recognizable
structural motif in the primary amino acid sequence is a single
putative zinc finger (Fig. 2A). A
search of the database (GenBank) revealed that this putative protein is
similar to that encoded by a recently identified mouse gene,
hairless (hr). The TRG37 ORF is 94%
identical to the ORF of the mouse hairless gene, suggesting
that TRG37 is the rat homolog of hairless.
Therefore, TRG37 was renamed hr.
Fig. 2.
TRG37 encodes a putative zinc
finger protein related to hairless; TRG16
encodes a novel synaptotagmin. A, Amino acid sequence of
TRG37 (94% amino acid identity with ORF from mouse
hairless gene). Cysteine residues potentially involved
in formation of a zinc finger are underlined.
B, Amino acid sequence of TRG16 (Srg1). Protein kinase C-related (C2) domains are
underlined; putative transmembrane domain is indicated
by dashed underline. C, Schematic
representation of Srg1 structure.
Cross-hatched boxes represent C2
domains; Srg1 shows between 26 and 37% amino acid identity in the region encompassing the C2 domains with
synaptotagmins I-VIII (19-31% in C2-A; 33-42% in
C2-B). Black box
(TM) at the N terminus indicates putative
transmembrane domain. The complete nucleotide sequences have been
submitted to GenBank under accession numbers U71293[GenBank] (hr)
and U71294[GenBank] (Srg1).
[View Larger Version of this Image (46K GIF file)]
For TRG16, I isolated multiple cDNAs that contained an ORF
encoding a predicted protein of 421 amino acids (Fig.
2B). A search of the database (GenBank) revealed that
this putative protein is most similar to synaptotagmin(s).
Synaptotagmins share a common structure that includes a C-terminal
region consisting of two domains related to the regulatory domain of
protein kinase C (C2 domains; Fig. 2C). The eight members of
the synaptotagmin family are related within this region (41-89% amino
acid identity with synaptotagmin I), but they do not show significant
amino acid identity outside this region. TRG16 has between
26 and 37% amino acid identity with the different synaptotagmins in
this C-terminal region. Also characteristic of synaptotagmins, the
TRG16 ORF lacks a signal sequence but has a hydrophobic
region near the N terminus, a putative transmembrane domain. Because of
this homology with synaptotagmins, TRG16 has been termed
Srg1 (Synaptotagmin related gene 1).
Srg1 and hr respond rapidly to
thyroid hormone
Genes that respond to hormones or other activators often are
divided into the broad categories of primary (direct) response genes
and secondary (indirect) response genes. Primary or direct response
genes are defined as those that respond rapidly and without the need
for protein synthesis, indicating that they are direct targets of
regulation by a particular transcriptional activator. The induction of
most previously described TH-responsive genes is blocked by protein
synthesis inhibitors, suggesting that they are secondary response genes
(Kanamori and Brown, 1992 ).
To determine whether Srg1 and hr are induced
directly by thyroid hormone, I examined the kinetics of regulation.
Hypothyroid neonatal (P12) rats were injected with thyroid hormone and
sacrificed at various times after treatment. Northern analysis of RNA
prepared from cerebellum shows that both Srg1 and
hr are rapidly upregulated (Fig. 3).
Induction of Srg1 occurs within 2 hr of treatment, reaching maximal levels by 4-8 hr. hr is induced within 4 hr,
reaching maximal levels by 8-12 hr. The rapid response of
Srg1 and hr suggests that these genes may be
direct targets of thyroid hormone action.
Fig. 3.
Srg1 and hr respond
rapidly to thyroid hormone. So that the kinetics of response to thyroid
hormone could be determined, 12-d-old hypothyroid rats were injected
with saline ( ) or thyroid hormone (+) and killed at various times
after injection. Total RNA (10 µg per lane) prepared from cerebellum
was used for Northern analysis with 32P-labeled cDNA probes
for hr (top) or Srg1
(bottom). ( ), Control; (+), TH-treated;
hr, hr after injection. Two independent
experiments gave the same results. B, hr
responds to thyroid hormone in the absence of protein synthesis. GH1
(rat pituitary) cells were grown in hormone-free media ( ) for 2 d. T3 was added to 10 7 M
(TH); cycloheximide (CHX)
was added to 10 µg/ml for 16 hr. Total RNA (15 µg per lane) was
used for Northern analysis.
[View Larger Version of this Image (68K GIF file)]
Cultured cells were used to determine whether induction of
hr by thyroid hormone (TH) could be blocked by inhibition of
protein synthesis with cycloheximide (CHX); Srg1 was not
analyzed, because it was not detected in any of the cell lines tested.
GH1 (rat pituitary) cells grown in the absence of TH were treated with TH, CHX, or both for 16 hr. Northern analysis shows that TH induces a
fourfold increase in hr expression and that this increase is resistant to cycloheximide treatment (Fig. 3). Simultaneous treatment with CHX and TH showed increased expression relative to CHX or TH
alone, likely attributable to stabilization of the message by CHX.
Hybridization of the same blot with a probe for growth hormone (GH)
showed that, as expected, induction of GH by TH was partially blocked
by cycloheximide (data not shown). The induction of hr
expression by thyroid hormone in the absence of protein synthesis shows
that hr responds directly to thyroid hormone.
Expression patterns of Srg1 and
hr are consistent with regulation by thyroid hormone during
development
To establish whether Srg1 and hr are
regulated by thyroid hormone during normal development, I determined
the expression pattern of both genes and compared it with that of
thyroid hormone receptors (TR 1 and TR 1). TH-responsive genes
likely to function in neural development should be expressed at the
time known to be important for the effect of thyroid hormone (postnatal
days 10-15) and when thyroid hormone receptors are present. Northern
analysis of RNA isolated from embryonic and postnatal brain shows that
Srg1 and hr both are expressed at high levels
shortly after birth, reaching a peak between postnatal days 14 and 21 (Fig. 4). Consistent with previous observations (Strait
et al., 1990 ; Forrest et al., 1991 ; Mellström et al., 1991 ;
Bradley et al., 1992 ), expression of TR 1 rises at birth, immediately
preceding expression of Srg1 and hr. TR 1 is
expressed prenatally and remains at high levels after birth (Forrest et
al., 1991 ; Mellström et al., 1991 ; Bradley et al., 1992 ).
Therefore, both Srg1 and hr are expressed at the appropriate time in normal development, both with respect to the critical time frame for the effect of thyroid hormone and the presence
of thyroid hormone receptors.
Fig. 4.
Developmental expression of hr and
Srg1 in brain. Northern analysis of RNA prepared from
the brains of embryonic and neonatal rats. Parallel blots (10 µg of
total RNA per lane) were hybridized with 32P-labeled cDNA
probes from hr, Srg1,
TR 1, TR 1 (top to
bottom). E, Day of gestation;
E22/P0, birth; P, days after birth.
[View Larger Version of this Image (71K GIF file)]
Srg1 and hr show
tissue-restricted expression
To determine whether expression of Srg1 and
hr is restricted to the CNS, I performed Northern analysis
of RNA isolated from various rat tissues. Expression of Srg1
was not detected outside the nervous system in either neonatal (Fig.
5A) or adult animals (data not shown).
Neonatal expression of hr is abundant in brain and skin and
is also detected at low levels in other tissues, including gut, lung,
muscle, and pituitary (Fig. 5A). The expression pattern is
the same in adult tissues, except for an additional RNA of ~3.5 kb
detected in brain (see Fig. 4). In contrast to brain, the
hairless gene is not regulated by thyroid hormone in skin
(Fig. 5B).
Fig. 5.
Tissue distribution of hr and
Srg1. A, RNA was prepared from various
tissues collected from euthyroid animals on postnatal day 12. Total RNA
(15 µg per lane) was used for Northern analysis with
32P-labeled cDNA probes from hr
(top) or Srg1 (bottom).
Spleen RNA is somewhat degraded; all other RNAs are equivalent, as
assessed by ethidium bromide staining. B,
hr is regulated by thyroid hormone in brain, but not in
skin. Shown is Northern analysis of RNA from cerebellum
(CEREB) and skin (SKIN) of
hypothyroid and euthyroid neonatal (P14) rats. Eu,
Euthyroid; H, hypothyroid.
[View Larger Version of this Image (45K GIF file)]
Srg1 and hr are expressed
specifically in the internal granule cell layer of the cerebellum
To examine more precisely the expression of Srg1 and
hr in the cerebellum, I used in situ
hybridization. Hybridization of coronal sections from P14 rats showed
that both Srg1 and hr were expressed in the
internal granule cell layer (IGL) of the cerebellum (Fig.
6). During maturation of the cerebellum, cells migrate
from the external granule cell layer (EGL) to the IGL, a region where the cell bodies of maturing neurons are found (Altman, 1972a -c; Rakic,
1972 ). The absence of expression in the EGL and presence in the IGL
suggest that Srg1 and hr are expressed only in
differentiated cells. To determine whether injection of hypothyroid
animals with thyroid hormone restored this expression pattern, I used
in situ hybridization of sections from hypothyroid animals
injected with either saline or thyroid hormone (Fig.
6D). For both Srg1 and hr,
expression induced in the cerebellum of thyroid hormone-treated animals
was indistinguishable from expression in euthyroid animals. Little or
no expression above background was detected in hypothyroid animals.
Induction of Srg1 by thyroid hormone was greater in
cerebellum than in more rostral brain regions (data not shown).
Fig. 6.
Expression of Srg1 and
hr in neonatal cerebellum. Shown is in
situ hybridization of coronal sections from cerebellum of P14 rat. Shown are results from Srg1; signal in the
cerebellum with an hr probe is comparable (see
B). A, Thionine counterstain (after hybridization); B, hybridization with antisense probe;
C, hybridization with sense probe.
EGL, External granule cell layer;
IGL, internal granule cell layer. Sections (10 µm) of
frozen tissue were hybridized with 35S-labeled cRNA probes.
B, C, Shown are photomicrographs of an autoradiographic image of the hybridized section exposed directly to
x-ray film. D, Expression induced by thyroid hormone
injection is indistinguishable from euthyroid expression in neonatal
cerebellum. In situ hybridization of coronal sections
from cerebella of P14 rats using a cRNA probe from Srg1
(top) or hr (bottom).
Eu, Euthyroid; H, hypothyroid; H + TH, hypothyroid treated with thyroid hormone for 48 hr.
Sections were hybridized simultaneously with the same probe
preparation. Shown are photomicrographs of the autoradiographic image
of the hybridized section exposed directly to x-ray film.
[View Larger Version of this Image (70K GIF file)]
Although this strategy initially focused on the
cerebellum, thyroid hormone affects many different regions of
the brain, suggesting that at least some TH-responsive genes are
expressed outside the cerebellum. In situ hybridization was
used to examine expression of Srg1 and hr in
other regions of the brain. hr is broadly expressed at low
levels throughout the forebrain and midbrain (data not shown), whereas
Srg1 shows a more restricted expression pattern (Fig.
7). High levels of Srg1 expression are
detected in several regions of the brain, including the cortex, caudate
putamen, hippocampus, thalamus, piriform cortex, and amygdala. Previous
studies have shown that these regions express other synaptotagmins as
well (Ullrich et al., 1994 ). This is a common feature of
synaptotagmins; different family members are often coexpressed. Because
Srg1 is regulated by thyroid hormone, this raises the
question of whether synaptotagmins are regulated by thyroid hormone as
well. Northern analysis of RNA from the brains of hypothyroid and
normal animals showed that two other synaptotagmins (syt I and syt III)
are not regulated by thyroid hormone (data not shown). Thus, regulation by thyroid hormone is not a feature common to all members of the synaptotagmin family and may be a property unique to Srg1.
Fig. 7.
Expression of Srg1 in neonatal rat
brain. Shown is in situ hybridization of coronal
sections from P14 rat brain. Sections are shown rostral
(A) to caudal (D). Hybridization with an
antisense 35S-cRNA probe from Srg1 is shown;
sense probe gave no detectable signal. Shown are photomicrographs of an
autoradiographic image of the hybridized section exposed directly to
x-ray film. AAA, Anterior amygdaloid area;
ACB, nucleus accumbens; BMA, basal medial amygdala; CA1, CA3, regions of hippocampus;
CoAp, cortical nucleus amygdala, posterior part;
CP, caudate putamen; DG, dentate gyrus; IsoCtx, isocortex; LA, lateral nucleus;
LHA, lateral hypothalamic area; MeA,
medial nucleus amygdala; OT, olfactory tubercle;
PIR, piriform area; thal, thalamus;
VB, ventrobasal complex, thalamus; ZI,
zona incerta.
[View Larger Version of this Image (87K GIF file)]
DISCUSSION
Novel TH-responsive genes isolated from neonatal rat brain
This study describes the identification and initial
characterization of genes regulated by thyroid hormone in developing
rat brain. Srg1 and hr represent the most rapidly
regulated (<4 hr) TH-responsive genes identified in the mammalian
nervous system; to date, hr is also the most highly induced
(>10-fold). hr does not require protein synthesis for
upregulation and thus is a direct target of thyroid hormone receptors.
Srg1 is activated with similar kinetics, so it is likely
that Srg1 is a direct response gene as well. Direct response
genes are of particular interest because such genes likely constitute
the first step in the genetic program responsible for TH-mediated
aspects of neural development.
Srg1 and hr have been shown to be regulated by
thyroid hormone in this experimental system; it is likely that they are
regulated by thyroid hormone during normal development as well. Both
genes are highly expressed within the first 2 weeks after birth, a time known to be crucial for the effect of thyroid hormone on development. Temporal expression of Srg1 and hr also is
correlated with the presence of thyroid hormone receptors. As shown
here and consistent with previous studies examining receptor mRNA
levels in the brain (Strait et al., 1990 ; Forrest et al., 1991 ;
Mellstrom et al., 1991; Bradley et al., 1992 ), expression of
Srg1 and hr immediately follows that of TR 1.
TR 1 is present at this time as well, but unlike TR 1 it is also
present at high levels prenatally. The timing of Srg1 and
hr expression suggests that regulation of these genes is
attributable either to the increased levels of thyroid hormone present
after birth or specific regulation by TR 1. These alternatives can be
distinguished by examining expression of these genes after thyroid
hormone levels are raised precociously.
In situ hybridization analysis of Srg1 and
hr showed that both are expressed in the IGL, but not the
EGL, of the cerebellum. In the course of cerebellar development,
neuroblasts residing in the EGL undergo terminal mitosis. The resulting
postmitotic cells migrate inward and ultimately populate the IGL
(Altman, 1972a -c; Rakic, 1972 ; Hatten and Heintz, 1995 ). Both genes
appear to be expressed in terminally differentiated cerebellar neurons and not in neuronal precursors. Thyroid hormone has been implicated in
promoting neuronal differentiation in the cerebellum (Nicholson and
Altman, 1972b ) and has been shown to be involved in differentiation of
oligodendrocytes (Barres et al., 1994 ). Based on these observations, an
attractive hypothesis is that the function of hr is in
establishment or maintenance of a differentiated state. The postulated
function of Srg1 as a component of synapses (see below)
makes it unlikely that Srg1 is involved directly in
differentiation.
Srg1, a novel gene related to synaptotagmin
One of the genes isolated in this screen (Srg1) encodes
a novel protein related to synaptotagmin(s). Synaptotagmins comprise a
family of Ca2+/phospholipid-binding proteins found in the
brain (Perin et al., 1990 ; Geppert et al., 1991 ; Hilbush and Morgan,
1994 ; Mizuta et al., 1994 ; Li et al., 1995 ). Among the eight related
genes that have been identified (syt I-VIII), four also are expressed
outside the nervous system (Mizuta et al., 1994 ; Li et al., 1995 ). The functional significance of multiple synaptotagmins is not clear. Mice
lacking a functional syt I gene are deficient in the fast component of
Ca2+-mediated neurotransmitter release at hippocampal
synapses (Geppert et al., 1994 ). Syt III is expressed in the same
hippocampal neurons as syt I but does not substitute for syt I,
suggesting that synaptotagmins do not have redundant functions (Ullrich
et al., 1994 ).
Srg1 and synaptotagmins share a common structure that
includes a C-terminal region consisting of two domains related to the regulatory region of protein kinase C (C2 domains). The N-terminal C2
domain (C2-A) of multiple synaptotagmins has been shown to bind
Ca2+ and phospholipids (Davletov and Sudhof, 1993 ; Li et
al., 1995 ). The C-terminal C2 domain (C2-B) has been shown to bind a
clathrin-coated vesicle protein complex (AP-2) and syntaxins (Zhang et
al., 1994 ; Li et al., 1995 ); all known synaptotagmins bind AP-2 and
syntaxin. Srg1 is related to synaptotagmins more in the C2-B
domain (33-42% amino acid identity) than in the C2-A domain
(19-31%) and is most related to syt IV and syt VI, forms that do not
bind Ca2+ and phospholipids. Based on structural
similarity, Srg1 is likely to bind AP-2 and syntaxins but
may not bind Ca2+ and phospholipids. Further studies will
determine whether Srg1 can be classified functionally with
synaptotagmins.
Regulation by thyroid hormone suggests that Srg1 may have
unique functions among the synaptotagmins; other synaptotagmins have
been tested (syt I and syt III) and are not induced by thyroid hormone.
The brains of thyroid hormone-deficient animals are estimated to have
approximately one-half the number of synapses of euthyroid animals
(Eayrs, 1968 ; Nicholson and Altman, 1972a ). Overall reduction in the
number of interneuronal connections has been proposed to be the cause
of behavioral changes in experimental animals and mental retardation in
humans (Eayrs, 1968 ; Schwartz, 1983 ). Therefore, it is tempting to
speculate that Srg1 may have a role in synaptogenesis or
synaptic remodeling, processes in which synaptotagmins previously were
not implicated. The temporal and spatial pattern of expression of
Srg1 in the cerebellum is consistent with this hypothesis. Srg1 is expressed in the cerebellar IGL; migration of cells
from the EGL to the IGL immediately precedes synapse formation by these cells.
hr, the rat homolog of hairless
This screen also identified a gene, hairless, not
previously known to be TH-responsive. hr is regulated by
thyroid hormone in brain, yet its expression is not influenced by
thyroid hormone in skin. This unusual tissue-specific regulation may
indicate a functional difference in the action of hr in
brain and skin.
The murine hairless locus was identified as a spontaneous
mutation caused by the insertion of an endogenous retrovirus between exons 6 and 7 (Stoye et al., 1988 ; Cachon-Gonzalez et al., 1994 ). The
most prominent phenotype of homozygous mutant (hr/hr) mice is that ~2 weeks after birth they experience progressive hair loss.
After their coat is shed completely (3-4 weeks of age), they remain
bald. These animals show increased sensitivity to UV and chemically
induced skin cancer (Poland et al., 1982 ; de Gruijl and Forbes, 1995 ).
In both skin and brain, homozygous mutant hairless mice have
~20-fold less hr mRNA than heterozygotes (my unpublished
observations). Although reduction of hr mRNA and, presumably, protein results in an obvious skin phenotype, the phenotype
in the brain has not been determined. Generation of hairless
null mutant mice will provide a useful tool for determining the
in vivo function of hr in the nervous system;
future studies will also examine whether mice homozygous for existing
hr alleles have brain defects resembling those of
hypothyroid animals.
The protein encoded by hr has a putative zinc finger domain.
Although the zinc finger motif usually occurs in multiple copies, several large proteins in a variety of species contain a single zinc
finger (Friden and Schimmel, 1987 ; Evans and Hollenberg, 1988 ; Fu and
Marzluf, 1990 ; Kudla et al., 1990 ; Tang et al., 1994 ), many of which
have been implicated in transcriptional regulation. hr has a
cluster of six cysteines with novel spacing that is conserved among
mouse, rat, and human (Cachon-Gonzalez et al., 1994 ; my unpublished
observations). In addition, hr is related to a gene with
testes-specific expression identified in rat (TSGA; Höög et
al., 1991 ). The proteins encoded by hr and TSGA show 33%
amino acid identity over a 260 amino acid region at their respective C
termini. The putative zinc finger domain lies outside this 260 amino
acid region, yet the arrangement of six cysteine residues is conserved
(shown below; underlined residues are conserved between hr
and TSGA).
- -S-R- -H-H-G-L- - -T- - -R- S-H-C- -H-R-L- - -A- -G- -I-
This configuration may be functionally significant; hr and TSGA may be
representative of a new class of zinc finger proteins. Given the
functional roles of other zinc finger proteins, the zinc finger domain
of hr is likely to have a role in nucleic acid binding
and/or protein-protein interactions.
Conclusions
Thyroid hormone affects neural development by initiating a finely
tuned program of gene expression. The results presented here suggest
that this thyroid hormone-induced genetic program includes
Srg1 and hr, making these genes excellent
candidates for performing important functions in neural development.
The success of this screen in identifying TH-responsive genes opens new
avenues for studying the molecular effects of thyroid hormone on the
mammalian CNS.
FOOTNOTES
Received July 26, 1996; revised Sept. 24, 1996; accepted Sept. 26, 1996.
This work was supported by the John Merck Fund at Community Trust, the
American Cancer Society, and National Institutes of Health (National
Institute of Diabetes and Digestive and Kidney Diseases). I thank L. Buckbinder, A. Lanahan, and Z. Wang for advice on subtractive
hybridization; R. Simerly for advice on in situ
hybridization; D. Brown and A. Kanamori for helpful discussions; O. Martin for technical assistance; A. Pinder for oligonucleotide synthesis; M. Sepanski for sectioning; H. Towle for the rat TR cDNA;
and R. Evans for the rat growth hormone cDNA. I am grateful to S. Dymecki, C.-M. Fan, P. Rorth, and G. Seydoux for critical comments on
this manuscript.
Correspondence should be addressed to Dr. Catherine C. Thompson,
Department of Embryology, Carnegie Institution of Washington, 115 West
University Parkway, Baltimore, MD 21210.
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[Abstract]
[Full Text]
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G. B. Potter, J. M. Zarach, J. M. Sisk, and C. C. Thompson
The Thyroid Hormone-Regulated Corepressor Hairless Associates with Histone Deacetylases in Neonatal Rat Brain
Mol. Endocrinol.,
November 1, 2002;
16(11):
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[Abstract]
[Full Text]
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A. N. Moraitis, V. Giguere, and C. C. Thompson
Novel Mechanism of Nuclear Receptor Corepressor Interaction Dictated by Activation Function 2 Helix Determinants
Mol. Cell. Biol.,
October 1, 2002;
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6831 - 6841.
[Abstract]
[Full Text]
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C. Cayrou, R. J. Denver, and J. Puymirat
Suppression of the Basic Transcription Element-Binding Protein in Brain Neuronal Cultures Inhibits Thyroid Hormone-Induced Neurite Branching
Endocrinology,
June 1, 2002;
143(6):
2242 - 2249.
[Abstract]
[Full Text]
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K. Ahearn, G. Akkouris, P. R. Berry, R. R. Chrissluis, I. M. Crooks, A. K. Dull, S. Grable, J. Jeruzal, J. Lanza, C. Lavoie, et al.
The Charles River "Hairless" Rat Mutation Maps to Chromosome 1: Allelic With Fuzzy and a Likely Orthologue of Mouse Frizzy
J. Hered.,
May 1, 2002;
93(3):
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[Abstract]
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T. C. Sudhof
Synaptotagmins: Why So Many?
J. Biol. Chem.,
March 1, 2002;
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[Full Text]
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D. M. Hutt, R. A. Cardullo, J. M. Baltz, and J. K. Ngsee
Synaptotagmin VIII Is Localized to the Mouse Sperm Head and May Function in Acrosomal Exocytosis
Biol Reprod,
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66(1):
50 - 56.
[Abstract]
[Full Text]
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M. Fukuda, E. Kanno, Y. Ogata, and K. Mikoshiba
Mechanism of the SDS-resistant Synaptotagmin Clustering Mediated by the Cysteine Cluster at the Interface between the Transmembrane and Spacer Domains
J. Biol. Chem.,
October 19, 2001;
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[Abstract]
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G. B. Potter, G. M.J. Beaudoin III, C. L. DeRenzo, J. M. Zarach, S. H. Chen, and C. C. Thompson
The hairless gene mutated in congenital hair loss disorders encodes a novel nuclear receptor corepressor
Genes & Dev.,
October 15, 2001;
15(20):
2687 - 2701.
[Abstract]
[Full Text]
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Y. Itoh, T. Esaki, M. Kaneshige, H. Suzuki, M. Cook, L. Sokoloff, S.-Y. Cheng, and J. Nunez
Brain glucose utilization in mice with a targeted mutation in the thyroid hormone alpha or beta receptor gene
PNAS,
July 24, 2001;
(2001)
171319498.
[Abstract]
[Full Text]
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P. M. Yen
Physiological and Molecular Basis of Thyroid Hormone Action
Physiol Rev,
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[Abstract]
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G. B. Potter, F. Facchinetti, G. M. J. Beaudoin III, and C. C. Thompson
Neuronal Expression of Synaptotagmin-Related Gene 1 Is Regulated by Thyroid Hormone during Cerebellar Development
J. Neurosci.,
June 15, 2001;
21(12):
4373 - 4380.
[Abstract]
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W. Zheng, Y.-M. Lu, G.-Y. Lu, Q. Zhao, O. Cheung, and W. S. Blaner
Transthyretin, Thyroxine, and Retinol-Binding Protein in Human Cerebrospinal Fluid: Effect of Lead Exposure
Toxicol. Sci.,
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61(1):
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[Abstract]
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K Djabali, V. Aita, and A. Christiano
Hairless is translocated to the nucleus via a novel bipartite nuclear localization signal and is associated with the nuclear matrix
J. Cell Sci.,
January 1, 2001;
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367 - 376.
[Abstract]
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A. A. Panteleyev, R. Paus, and A. M. Christiano
Patterns of Hairless (hr) Gene Expression in Mouse Hair Follicle Morphogenesis and Cycling
Am. J. Pathol.,
October 1, 2000;
157(4):
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[Abstract]
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M. Fukuda, E. Kanno, and K. Mikoshiba
Conserved N-terminal Cysteine Motif Is Essential for Homo- and Heterodimer Formation of Synaptotagmins III, V, VI, and X
J. Biol. Chem.,
October 29, 1999;
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M. Fukuda and K. Mikoshiba
A Novel Alternatively Spliced Variant of Synaptotagmin VI Lacking a Transmembrane Domain. IMPLICATIONS FOR DISTINCT FUNCTIONS OF THE TWO ISOFORMS
J. Biol. Chem.,
October 29, 1999;
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N. Koibuchi, H. Fukuda, and W. W. Chin
Promoter-Specific Regulation of the Brain-Derived Neurotropic Factor Gene by Thyroid Hormone in the Developing Rat Cerebellum
Endocrinology,
September 1, 1999;
140(9):
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[Abstract]
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R. J. Denver, L. Ouellet, D. Furling, A. Kobayashi, Y. Fujii-Kuriyama, and J. Puymirat
Basic Transcription Element-binding Protein (BTEB) Is a Thyroid Hormone-regulated Gene in the Developing Central Nervous System. EVIDENCE FOR A ROLE IN NEURITE OUTGROWTH
J. Biol. Chem.,
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A. A. Panteleyev, N. V. Botchkareva, J. P. Sundberg, A. M. Christiano, and R. Paus
The Role of the Hairless (hr) Gene in the Regulation of Hair Follicle Catagen Transformation
Am. J. Pathol.,
July 1, 1999;
155(1):
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S. Butz, R. Fernandez-Chacon, F. Schmitz, R. Jahn, and T. C. Sudhof
The Subcellular Localizations of Atypical Synaptotagmins III and VI. SYNAPTOTAGMIN III IS ENRICHED IN SYNAPSES AND SYNAPTIC PLASMA MEMBRANES BUT NOT IN SYNAPTIC VESICLES
J. Biol. Chem.,
June 25, 1999;
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K. Ibata, M. Fukuda, and K. Mikoshiba
Inositol 1,3,4,5-Tetrakisphosphate Binding Activities of Neuronal and Non-neuronal Synaptotagmins. IDENTIFICATION OF CONSERVED AMINO ACID SUBSTITUTIONS THAT ABOLISH INOSITOL 1,3,4,5-TETRAKISPHOSPHATE BINDING TO SYNAPTOTAGMINS III, V, AND X
J. Biol. Chem.,
May 15, 1998;
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[Abstract]
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W. Ahmad, M. Faiyaz ul Haque, V. Brancolini, H. C. Tsou, S. ul Haque, H. Lam, V. M. Aita, J. Owen, M. deBlaquiere, J. Frank, et al.
Alopecia Universalis Associated with a Mutation in the Human hairless Gene
Science,
January 30, 1998;
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A. Guadano-Ferraz, M. J. Obregon, D. L. St. Germain, and J. Bernal
The type 2 iodothyronine deiodinase is expressed primarily in glial cells in the neonatal rat brain
PNAS,
September 16, 1997;
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[Abstract]
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C. C. Thompson and M. C. Bottcher
The product of a thyroid hormone-responsive gene interacts with thyroid hormone receptors
PNAS,
August 5, 1997;
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[Abstract]
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R. J. Denver, S. Pavgi, and Y.-B. Shi
Thyroid Hormone-dependent Gene Expression Program for Xenopus Neural Development
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Y. Itoh, T. Esaki, M. Kaneshige, H. Suzuki, M. Cook, L. Sokoloff, S.-Y. Cheng, and J. Nunez
Brain glucose utilization in mice with a targeted mutation in the thyroid hormone alpha or beta receptor gene
PNAS,
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