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Volume 17, Number 11,
Issue of June 1, 1997
pp. 4159-4169
Copyright ©1997 Society for Neuroscience
Cloning and Functional Characterization of Roaz, a Zinc Finger
Protein that Interacts with O/E-1 to Regulate Gene Expression:
Implications for Olfactory Neuronal Development
Robert Y. L. Tsai and
Randall R. Reed
The Howard Hughes Medical Institute, Department of Molecular
Biology and Genetics, and Department of Neuroscience, The Johns Hopkins
University School of Medicine, Baltimore, Maryland 21205
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
REFERENCES
ABSTRACT
We have identified a protein, Rat O/E-1-associated zinc finger
protein (Roaz), that plays a role in regulating the temporal and
spatial pattern of olfactory neuronal-specific gene expression. This
protein functions by interacting with the olfactory factor O/E-1 and
modulating its transcriptional activity. Roaz, isolated via a yeast
two-hybrid screen, encoded a protein containing 29 C2H2 zinc fingers of the TFIIIA type. The Roaz
mRNA was found in brain, eye, olfactory epithelium, spleen, and heart.
In situ hybridization data indicated that Roaz was
expressed in the basal layer, consisting of neural precursor cells and
immature sensory neurons of the olfactory epithelium, but not in the
mature receptor cells. We showed that the Roaz protein bound
specifically to O/E-1 by using the yeast two-hybrid system. The two
proteins formed a stable complex in coimmunoprecipitation and in
vitro binding assays. Introduction of Roaz and O/E-1 into cells
containing an olfactory promoter-driven luciferase reporter
demonstrated that Roaz abolished O/E-1-mediated transcriptional
activation. We propose that the function of Roaz is to modulate
negatively the transactivational activity of O/E-1 and to act as a
switch protein in the coordination of olfactory sensory neuron
differentiation.
Key words:
coregulator;
sensory neuron;
zinc finger;
transcription
factors;
neurodevelopment;
olfactory epithelium
INTRODUCTION
The olfactory epithelium uses a specialized
G-protein-mediated signal transduction pathway to detect a wide
spectrum of odors in a highly specific and sensitive way (Reed, 1990
;
Bakalyar and Reed, 1991
; Breer and Boekhoff, 1992
). Several components
involved in this sensory signaling pathway have been cloned and
characterized (Danciger et al., 1989
; Jones and Reed, 1989
; Bakalyar
and Reed, 1990
; Dhallan et al., 1990
; Buck and Axel, 1991
; Levy et al., 1991
). Each of these components is expressed preferentially or exclusively in the receptor neurons of the olfactory epithelium.
The olfactory receptor neuronal population possesses a remarkable
ability to undergo continuous replenishment throughout adult life
(Graziadei and Graziadei, 1979a
,b
). During neuronal differentiation stem cells undergo asymmetric division and give rise to progenitor cells (Stemple and Mahanthappa, 1997
). The progenitor cells divide symmetrically and give rise to postmitotic immature neurons, which migrate apically as they undergo terminal differentiation. The mature
olfactory receptor neuron (ORN) derives from the globose basal cells
that may represent a neural stem cell population in the
pseudostratified epithelium (Calof and Chikaraishi, 1989
; Caggiano et
al., 1994
; Hunter et al., 1994
).
The establishment of tissue-specific phenotypes in several systems is
controlled by specific transcriptional activators (Weintraub et al.,
1991
; Kaushal et al., 1994
). An effort to find factors responsible for
ORN cell fate determination and the coordinated regulation of
olfactory-specific genes led to the identification of the Olf-1 gene
(hereafter called O/E-1 for Olf-1/EBF) (Hagman et al., 1993
; Wang and
Reed, 1993
). The O/E-1 protein is the first member of a novel class of
transcription factors containing a complex structural organization
composed of an extended region of 350 residues responsible for protein
dimerization and DNA binding (Hagman et al., 1993
, 1995
; Wang and Reed,
1993
). It has the ability to homodimerize efficiently and bind to the
pseudosymmetric cis-acting regulatory sequence YTCCCYRGGGAR
found in proximity to the promoter regions of several
olfactory-specific genes, including olfactory marker protein (OMP),
type III adenylyl cyclase (ACIII), Golf, olfactory cyclic
nucleotide-gated channel (OcNC), and two genes, 50.06 and 50.11, of
unknown functions (Kudrycki et al., 1993
; Wang et al., 1993
). O/E-1
immunoreactivity can be detected in the nasal turbinate as early as
embryonic day 11 and throughout adult life in the neural precursors and
the receptor neurons.
An independent effort to identify DNA binding proteins involved in the
regulation of the pre-B lymphocyte-specific gene mb-1 resulted in the identification of early B-cell factor (EBF), apparently encoded by the same gene as O/E-1 (Hagman et al., 1993
). In
O/E-1-deficient mice the B-cell lineage failed to develop normally, but
the olfactory epithelium appeared to be unaffected (Lin and Grosschedl,
1995
). We recently have identified a family of O/E-1-like proteins (the O/E proteins), displaying redundant biochemical and functional activities, which are expressed in olfactory epithelium, but not in
tissues in which B-cell progenitors reside. These observations could
account for the lack of an obvious phenotype in the olfactory epithelium for the O/E-1 knock-out mice (Wang et al., 1997
).
Expression of the O/E family members significantly precedes activation
of known target genes, both temporally during embryonic development and
spatially in the adult olfactory epithelium. These observations suggest
that, in addition to maintaining the cellular phenotype of terminally
differentiated ORNs, O/E proteins may have an additional role in the
early stage of neuronal differentiation (Kudrycki et al., 1993
).
Similar dual functions also have been described in several other
systems such as twist, distal-less-2, and
fushi tarazu (Price et al., 1991
; Turner et al., 1994
;
Baylies and Bate, 1996
; Spicer et al., 1996
).
In this paper we have used O/E-1 as the canonical member of the O/E
transcription factor family to identify factors that might regulate its
activity. Using a yeast two-hybrid system, we identified a protein, Rat
O/E-1-associated zinc finger protein (Roaz), which was expressed
predominantly in the basal layer, consisting of neural precursor cells
and immature ORNs. We further demonstrated that coexpression of O/E-1
and Roaz had a dramatic effect on expression of a reporter in
cell-based transactivation assays. The properties of this zinc finger
protein suggest that it may act to alter the expression of two groups
of target genes during cell lineage determination and
differentiation.
MATERIALS AND METHODS
Yeast two-hybrid screen and plasmid construction.
All experiments were performed with the yeast strain
y190 (MATa gal4 gal80 his3 trp1-901 ade2-101 ura3-52 leu2-3,
112 + URA3:: GAL
lacZ, LYS2:: GAL
HIS3
cyhr; Steven J. Elledge, University of Texas Southwestern
Medical School) (Harper et al., 1993
). Yeast was grown in yeast
extract, peptone, and dextrose (YPD), Synthetic Complete (SC), or
drop-out medium.
A 2.3 kb SalI/NotI fragment containing the
full-length O/E-1 was obtained by restriction digestion of Y11 plasmid
(Wang and Reed, 1993
) and subcloned into the bait vector pPC97
containing GAL4 DNA binding domain and Leu selection marker (Chevray
and Nathans, 1992
). The resulting construct, pPC97-O/E-1, was
transformed into y190 by selecting for Leu+ colonies. An
individual isolate was transformed with the rat olfactory cDNA library
(3.6 × 106 independent transformants) fused to GAL4
transactivator domain in the prey vector, pPC86 (Wang and Reed, 1993
).
The 1.9 × 106 double transformants were plated on
SC-Leu,-Trp,-His minimal plates containing 50 mM of
3-aminotriazole (Sigma, St. Louis, MO) to reduce leaky expression of
HIS+ phenotype. HIS+ colonies from the primary
screen were restreaked on secondary plates and screened for both
HIS+ phenotype and
-galactosidase activity.
The expression vectors pCIS-XPRoazD86 and pCIS-XPIC2 were made by
subcloning the SalI/NotI inserts from the pPC86
vectors containing RoazD86 and IC2 inserts into pEBVHisB (Invitrogen, San Diego, CA). An EcoRI/XbaI fragment,
containing the insert sequence fused in-frame with a 5
eukaryotic ATG,
His6, and XPress epitope tag, then was subcloned into pCIS
vector. The pCIS-GST-RoazD86 expression vector was made by subcloning
the SalI/NotI fragment, isolated from RoazD86,
into a pCIS-GST vector. pCIS-GST-Roaz was constructed by subcloning a
4.5 kb EcoRV/NotI fragment isolated from pBS-Roaz
into a pCIS-GST vector. The pBS-Roaz composite cDNA clone was
reconstituted from three different cDNA clones by using unique
PmlI and BspEI sites to ligate between JBOZ2.2
and JBOZ1.3, and JBOZ1.3 and RoazD86, respectively. The
pCIS-OED5(NcoI) vector was made by subcloning the
SalI/NotI insert derived from pPC86-OED5 into
pCIS-GST and removing the last 69 amino acids, including the antisera
JH1132 epitope, by NcoI/NotI digestion, Klenow
fill-in, and blunt end ligation.
Terminally truncated constructs were made by using Erase-a-base
(Promega, Madison, WI). N-terminal deletion of pPC97-O/E-1 was made by
protecting the SalI site (using Klenow fill-in with
-phosphorothioate deoxyribonucleotides) and deleting from the BspEI site. C-terminal deletion of pPC97-O/E-1 was made by
protecting the SacI site and deleting from the
NotI site. All deletion constructs were verified by DNA
sequence analysis.
cDNA library screen and 5
rapid amplification of cDNA ends
(RACE)-PCR. Random primed 32P-labeled DNA fragments
were used to screen an oligo-dT-primed
ZAP rat olfactory cDNA
library (1 × 106 independent clones) and a
random-primed
ZAP rat forebrain cDNA library (3 × 106 independent clones; Jim Boulter, Salk Institute, San
Diego, CA). The 5
RACE-PCR procedure was performed with a Clontech
Marathon cDNA amplification kit (Palo Alto, CA). For the first and
second RACE reactions, a sequence derived from JBOZ1.3 was used to make a gene-specific primer (RT198, 5
-AGTCAGGTGTAG-3
) for the reverse transcriptase/cDNA synthesis reaction. PCR reactions were performed with an internal antisense primer (RT200,
5
-GGGGGAATTCCAGGTGTAGCACTGCTCATGGAAG-3
) and a nested primer (RT197,
5
-CTGTCCAGGTGGCAGTAC-3
) for the first round PCR and an internal
primer (RT205, 5
-TCCTGTCTTCCA-GCGCACGGCTGG-3
) for the second
round PCR. Six clones were sequenced. Four clones from the second round
RACE-PCR, RE2.7, RE2.9, RE2.11, and RE2.16, represented the same PCR
products extending 822 bp 5
of JBOZ1.3. Two clones from the first
round RACE-PCR, RE1.2 and RE1.3, were 363 and 75 bp shorter than
RE2.11, respectively. For the third round of RACE-PCR, a gene-specific
RT primer derived from RE2.11 (RT241, 5
-AGGTCTGCCAGAGACTCGAAGTCC-3
)
and an internal antisense PCR primer (RT205,
5
-TCCTGTCTTCCAGCGCACGGC-TGG-3
) were used. Thermostable
rTth polymerase was used for first-strand cDNA synthesis at 70°C. For
each round of RACE-PCR, products were blunt-ended and subcloned into
pBluescript KS. The sizes of the inserts were estimated by PCR, and
5-10 clones with the longest lengths of inserts were sequenced.
Reverse transcription-PCR. Total RNA (2 µg) prepared
from tissues of Sprague Dawley rats by using RNAzol B was
reverse-transcribed into first-strand cDNA with 500 ng of gene-specific
primer (RT163, 5
-TGGTTCTGCAACTCTGTC-3
) for Roaz or random hexamers
for O/E-1 and RNA polymerase II control and M-MLV reverse transcriptase (Life Technologies, Gaithersburg, MD) in 20 µl reactions. For Roaz
expression the PCR reaction was performed with 2 µl of the first-strand cDNA solution and 1 µM each of sense (RT250,
5
-ACTCCCTCACTGGTTTCCGC-TGTG-3
) and antisense primer
(RT251, 5
-CGAAGGTCATCTGGCA-CTTGATGC-3
) for 35 cycles of
denaturation (94°C, 30 sec), annealing (65°C, 1 min), and extension
(72°C, 1 min). The expression pattern of O/E-1 and RNA polymerase II
was examined under similar conditions with the following pairs of
primers: RT216, 5
-CCTGGCCCTCTACGACAGAC-3
; SW9,
5
-CCTATGATGATCACAGTCGCG-3
with 52°C annealing temperature for
O/E-1; and RT56, 5
-GCCATGCAGAAGTCTGGCCGTCCCCTCAAG-3
; RT57, 5
-CTTATAGCCAGTCTGCAGATGAAGGT-CAC-3
with 65°C
annealing temperature for RNA polymerase.
Tissue preparation and in situ hybridization.
Mice, C57B6/J (Jackson Laboratories, Bar Harbor, ME), were
anesthetized with pentobarbital and perfused intracardially with
ice-cold PBS, followed by Bouin's solution (Sigma). Tissues were
harvested and post-fixed in the same fixative for 2 hr before immersion
in 30% sucrose/1× PBS at 4°C overnight. Then tissues were embedded
in OCT (Tissue-Tek, Torrance, CA), and sections (18 µm) were
collected onto Superfrost Plus (Fisher, Pittsburgh, PA) glass slides.
In situ hybridization was performed as described (Schaeren
and Gerfin, 1993
), using digoxigenin-labeled RNA probes synthesized
from plasmid JBOZ1.3 for Roaz, pBS-O/E-1 (containing full O/E-1 coding
sequence) for O/E-1, and pBS-OMP (containing full OMP coding region)
for OMP.
Affinity chromatography. RoazD86 was expressed as
glutathione S-transferase (GST) fusion protein by transient
transfection into human embryonic kidney cell line (HEK293) cells. Four
100 mm plates of 293 cells were collected, washed two times with 1× PBS, and extracted with 4 ml of extraction buffer (1× PBS, 1% Triton
X-100, 1 mM PMSF, 1 µg/ml leupeptin, 2 µg/ml aprotinin, and 1 µg/ml pepstatin A) for 30 min
at 4°C. After preclearing the extract by centrifugation at
15,600 × g for 20 min, we added 200 µl of 50%
slurry of glutathione-bound agarose beads to the supernatant and rocked
it at 4°C for 1 hr. The beads were washed one time with 1× PBS, one
time with 1× PBS plus 500 mM NaCl, and three times with
1× PBS. The GST protein was isolated in a similar way. Whole-cell
extracts for binding studies were isolated as described above from
HEK293 cells transfected with pCIS-O/E-1, O/E-2, or O/E-3 plasmid (Wang
et al., 1997
). The extracts (400 µg) were mixed with 6-8 µg of
GST-RoazD86 fusion protein bound to 30 µl of glutathione-agarose
beads and rocked for 2 hr at 4°C. The beads were washed one time with
1× PBS, two times with 1× PBS plus 500 mM NaCl, and three
times with 1× PBS. Sample buffer (30 µl) was added, and a fraction
(4 µl) was resolved on a 10% SDS-PAGE and analyzed by Western
blotting with anti-O/E-1 antibody that recognized all three of the O/E
proteins [JH1132, antipeptide antibody (Davis and Reed, 1996
)].
The study of interaction between full-length Roaz and O/E-1 was
performed essentially as described above, with the following modification: 700 ng of GST-Roaz fusion protein was mixed with 400 µg
of pCIS-O/E-1-transfected whole-cell extract in the binding assay.
Retained proteins were resolved on a 10% SDS-PAGE and analyzed by
Western blotting with anti-O/E-1 antibody.
Coimmunoprecipitation. RoazD86 was tagged with an engineered
eukaryotic ATG, His6 epitope tag, and XPress sequence
(XPRoazD86) and subcloned into the pCIS expression vector.
pCIS-XPRoazD86 and pCIS-XPIC2, containing an irrelevant sequence, were
transfected into HEK293 cells. A soluble fraction of whole-cell protein
(200 µg) was mixed with a similar amount of protein extracted from cells transfected with pCIS-O/E-1 or pCIS. Protein A-Sepharose (80 µl
of a 50% slurry) was mixed with 15 µl of anti-O/E-1 crude serum
(JH865, anti-O/E-1 fusion protein antibody) or preimmune serum. The
volume was adjusted to 1 ml with extraction buffer and rocked at 4°C
for 2 hr. After incubation the protein A-Sepharose beads were washed
one time with 1× PBS, two times with 1× PBS plus 500 mM
NaCl, and three times with 1× PBS. Sample buffer (50 µl) was added,
and a 20 µl aliquot was fractionated on a 10% SDS-PAGE and subjected
to Western blot analysis with anti-XPress antibody (1:5000, Invitrogen,
San Diego, CA).
Cell culture and transfection. The HEK293 was grown in DMEM
(Life Technologies) supplemented with 10% fetal calf serum, penicillin (100 U/ml), streptomycin (100 µg/ml), and
L-glutamine (2 mM). Calcium phosphate-mediated
transfections were performed in a 100 mm Petri dish with 5 µg of
construct DNA, 5 µg of pBluescript DNA, and 1 µg of pRSV-T antigen
expression vector. After 5 hr of incubation at 37°C, the cells were
treated with 10% DMSO in 1× HBS (140 mM NaCl, 25 mM HEPES, and 1.4 mM
Na2HPO4) and incubated for 48 hr before the
preparation of protein extracts (Levin and Reed, 1995
).
Electrophoretic mobility shift assay. A gel shift assay was
performed essentially as described (Hagman et al., 1993
; Wang et al.,
1993
), with the following modification. A different amount of protein
was mixed with 3-5 × 104 cpm of probe in 20 µl of
binding reaction and incubated at 20°C for 30 min. Binding reaction
contained 10 mM HEPES, pH 7.9, 70 mM KCl, 1 mM DTT, 4% glycerol, 1 mM EDTA, 2.5 mM MgCl2, 200 µg/ml of poly(dI-dC),
and 20 µg/ml of salmon sperm DNA. The mixture was subjected to
electrophoresis either on a 6% polyacrylamide gel
(acrylamide/bisacrylamide ratio, 59:1) or a 1.5% agarose gel in 0.25×
Tris-borate (TBE) buffer at 4°C. Products were detected by
autoradiography of the dried gel.
For synthetic oligonucleotides, 150 ng of top-strand primer was labeled
with [
-32P]ATP by using T4 DNA polynucleotide kinase
in a 20 µl reaction. After removal of unlabeled free nucleotides
through a G-50 column, the primer was annealed with 750 ng of
complementary oligonucleotide in annealing buffer (100 mM
KCl, 10 mM Tris, pH 8.0, and 1 mM EDTA) at
100°C for 5 min, incubated at 68°C for 1 hr, and slowly cooled to
room temperature. DNA fragments were labeled with
[
-32P]dCTP by Klenow fill-in.
Luciferase activity assay. One 60 mm plate of HEK293 cells
was cotransfected transiently with 1 µg of the indicated pGL2-based reporter plasmid along with 500 ng of pCIS vectors expressing O/E-1,
O/E-2, or O/E-3 proteins and/or 500 ng of pCIS-GST-Roaz plasmid. All
transfections were adjusted to 5 µg of total DNA with pCIS vector
DNA. The luciferase reporter activity was measured from equivalent
amounts of protein lysate of each sample with a luciferase assay system
(Promega) and Monolight 2010 luminometer (Analytical Luminescence
Laboratory, San Diego, CA). The relative luciferase activity was
calculated by comparing the activity measured in each cotransfection
experiment with the activity of reporter plasmid plus pCIS expression
vector cotransfection control (arbitrarily set at 1.0). All luciferase
assays were determined in duplicate.
The pGL-AC3R/B vector contained a 1.55 kb
EcoRI/BamHI DNA fragment, including 500 bp of
5
-untranslated region (UTR) and an O/E binding site at position
270
cloned into the polylinker region of pGL2-Basic vector (pGL-B)
(Promega). The pGL-OMP vector was composed of a 2.7 kb DNA fragment
containing 59 bp of 5
-UTR and two O/E binding sites (
180 and
700)
cloned into the XhoI site of the pGL-B vector.
RESULTS
Cloning of O/E-1 interacting clones by yeast two-hybrid system
A screen for O/E-1 interacting proteins was performed with
the yeast two-hybrid system (Fields and Song, 1989
; Chien et al., 1991
;
Fields and Sternglanz, 1994
). The full-length O/E-1 protein fused to
GAL4 DNA binding domain [GAL4(DB)] was used as a bait (pPC97-O/E-1)
(Chevray and Nathans, 1992
) to screen a rat olfactory cDNA library of
3.6 × 106 independent transformants fused to the GAL4
transactivator domain [GAL4(TA)] (Wang and Reed, 1993
). The physical
association of GAL4(DB) and GAL4(TA) via the interaction of O/E-1 and
the prey proteins turned on the expression of His3 and lacZ genes.
Selection for HIS+ and
-galactosidase-positive
transformants led to the identification of 25 clones from among the
1.9 × 106 transformants. Plasmids isolated from 9 of
the 25 colonies displayed O/E-1-dependent expression of the selectable
markers. The isolates were grouped according to their strength of
interaction with O/E-1 as estimated by both HIS+ phenotype
and
-galactosidase activity. Three clones interacted with O/E-1
strongly, two at intermediate levels, and four weakly. The three
strongly interacting clones encoded a zinc finger protein. One clone of
intermediate strength encoded a partial O/E-1 sequence (OED5) from aa
221 to the stop codon fused in-frame with GAL4 transactivator domain;
the other encoded a novel zinc finger protein. We chose to
study the three clones that displayed strong and specific interaction
with O/E-1.
Identification and characterization of a zinc finger
protein, Roaz
Sequence analysis revealed that all of the three strongly
interacting clones represented the same cloning event, in which a gene
with an open reading frame of 2100 bp was fused in-frame with the GAL4
transactivator domain. The insert, RoazD86, encoded a partial
sequence of a C2H2 zinc finger protein of the
TFIIIA type.
A full-length cDNA of Roaz was obtained by using a combination of
cDNA library screen and RACE-PCR (Fig.
1A). A rat forebrain random-primed cDNA library was screened by using the complete insert
sequence of RoazD86 as a probe, and 12 overlapping clones were
identified and sequenced with the longest one, JBOZ1.3, extending 1047 bp further upstream of RoazD86. Then RACE-PCR was performed to
characterize further the 5
end of the mRNA. Two rounds of RACE
reactions generated several products, with the longest clone from the
first round (RE1.3) extending 747 bp upstream of JBOZ1.3 and the
longest clone from the second round (RE2.11) extending 822 bp 5
upstream of JBOZ1.3. To confirm the sequence obtained from RACE-PCR, we
screened the rat forebrain library, using RE1.3 as a probe. Six
independent clones were isolated, with the longest one, JBOZ2.2,
extending 657 bp upstream of JBOZ1.3. Finally, another round of
RACE-PCR was performed with thermostable rTth reverse transcriptase to
destabilize possible secondary structures in the first-strand synthesis
step. Three additional clones were isolated. One clone was 24 bp
shorter than RE2.11. The sequences from the other two clones diverged
from RE2.11 from the +74 nucleotide position and extended 21 and 50 bp
further upstream, possibly representing spliced variants.
Fig. 1.
Structure and sequence of Roaz cDNA clones.
A, Schematic representation of Roaz and various cDNA
clones isolated from cDNA library screens and RACE-PCR. Each
shaded box represents one zinc finger structure.
RoazD86 is the original clone isolated from the yeast
two-hybrid screen. The other clones represent isolates from subsequent
cDNA library screens and RACE-PCR, as indicated in the text. The 3
-UTR
of Roaz is not shown in this diagram. B, cDNA sequence
and predicted open reading frame of Roaz. The amino acid sequences of
zinc finger structures are
underlined. Figure continues.
[View Larger Versions of these Images (10 + 94K GIF file)]
The overlapping clones resulted in a composite insert of 4.7 kb
containing a predicted open reading frame of 1186 amino acids initiating at the 5
-most methionine and followed by 693 bp of 3
-UTR
with a polyadenylation signal and poly(A) tail (Fig.
1B). The deduced polypeptide sequence consisted of a
protein encoding 29 C2H2 zinc finger motifs. A
search of available databases with the Roaz sequence revealed extensive
homology with an unpublished partial cDNA fragment isolated from rat
aorta (gi/207695).
Northern blot analysis of 30 µg of poly A+ RNA isolated
from rat forebrain identified a major 4.7-5.1 kb transcript and a
minor 5.8-6 kb transcript (our unpublished data). Both of these
transcripts were of low abundance. The expression pattern of Roaz in
different tissues was examined by RT-PCR, and the Roaz transcripts were found to be present in the olfactory epithelium, spleen, brain, eye,
and heart (Fig. 2A). No message was
detected in the intestine, kidney, lung, liver, or testis. The O/E-1
mRNA was expressed preferentially in the olfactory epithelium and
spleen, the site of B-cell development (Fig. 2B). To
determine the cell type(s) expressing Roaz mRNA in the olfactory
epithelium, we performed in situ hybridization with
digoxigenin-labeled riboprobe (Fig. 3). Roaz was found
mainly in the basal cell layer and the lower one-third of the
pseudostratified epithelium containing the immature ORNs.
Fig. 2.
Expression pattern of Roaz and O/E-1.
A, RT-PCR of Roaz expression in tissues with the use of
a gene-specific oligonucleotide. M, 1 kb marker;
B, forebrain; E, eye; H,
heart; I, intestine; K, kidney;
Lg, lung; Lv, liver; O,
olfactory epithelium; S, spleen; T,
testis; P, 5 ng of Roaz-containing plasmid DNA as a
positive control; G, 100 ng of genomic DNA.
B, RT-PCR of O/E-1 and RNA Polymerase II.
[View Larger Version of this Image (79K GIF file)]
Fig. 3.
In Situ hybridization. Digoxigenin
in situ hybridization of Roaz, O/E-1, and OMP in adult
olfactory epithelium. The pseudostratified epithelium is composed of
the sustentacular cell layer (SL), the basal/immature cells
(B/IN) and mature olfactory receptor neurons (ORN). Sections were hybridized with Roaz antisense probe
(A, E), Roaz sense probe
(B, F), OMP antisense probe
(C), and O/E-1 antisense probe (D).
Images in A and B are low-magnification
coronal images of the mouse epithelium. Scale bar, 200 µm. Images in
C-F are from the same sections at high
magnification.
[View Larger Version of this Image (93K GIF file)]
In vitro binding assay and coimmunoprecipitation
The direct interaction between Roaz and O/E-1 was demonstrated by
an in vitro binding assay and coimmunoprecipitation.
Full-length O/E-1 protein expressed in HEK293 cells was retained
specifically on the GST-RoazD86 affinity column, but not on a GST-bound
affinity column (Fig. 4A, left,
lanes 1, 2). The previously documented ability of O/E-1 to homodimerize was confirmed in this assay
(lane 4), although the amount of retained O/E-1
protein was less than that observed for the Roaz and O/E-1 heteromeric
interaction. This observation was consistent with the result from the
original yeast screen in which Roaz displayed stronger interactions
than the O/E-1 protein with the O/E-1 bait. The ability of full-length Roaz protein, expressed as a GST fusion and immobilized on a column, to
retain the soluble O/E-1 protein was assessed (Fig. 4A,
right, lane 1). The results of this experiment
confirm that the Roaz/O/E-1 interaction is maintained with the native
protein. Further supporting the specificity of this interaction is the
ability of the other O/E proteins to interact with RoazD86 (Fig.
4B).
Fig. 4.
Biochemical characterization of Roaz/O/E-1
interaction. A, Left, Demonstration of
Roaz interaction with O/E-1 by affinity chromatography. Purified
proteins (GST or GST fusions) were mixed with whole-cell protein
isolated from HEK293 cells transfected with pCIS-O/E-1 or pCIS vector.
Bound protein was extracted with 30 µl of sample buffer, and 20 µl
was fractionated on a 10% SDS-PAGE and detected by Western blotting
with the use of anti-O/E-1 antibody (JH1132); one-twentieth of the
input was loaded for comparison. Right, Interaction of
O/E-1 with full-length Roaz protein. Proteins were purified as
described above except that pCIS-GST-Roaz was transfected. Protein
yields for the full-length construct were consistently lower than those
observed for the pCISRoazD86 vector. B,
Demonstration of Roaz interaction with O/E family proteins by affinity chromatography. Purified proteins
(GST or GST fusions, 9 µg) were mixed with whole-cell proteins (400 µg) isolated from HEK293 cells transfected with pCIS-O/E-1,
pCIS-O/E-2, or pCIS-O/E-3. Bound proteins were extracted with 60 µl
of sample buffer. One-fifth (12 µl) was fractionated on a 10%
SDS-PAGE and detected by Western blotting with the use of the
anti-O/E-1 antibody (JH1132); one-twentieth of the input was loaded for
comparison. C, Coimmunoprecipitation of Roaz and O/E-1
with anti-O/E-1 antibody (JH865). Whole-cell extract from HEK293 cells
transfected with different constructs was mixed with anti-O/E-1
antibody (JH865) or preimmune serum and protein A-Sepharose. After
being washed, resins were extracted with 50 µl of sample buffer; 20 µl was loaded on a 10% SDS-PAGE and detected after Western blotting
with the use of anti-XPress antibody. One-fortieth of the input was
loaded as a reference.
[View Larger Version of this Image (17K GIF file)]
In parallel, the interaction of Roaz and O/E-1 was examined in solution
by anti-O/E-1 antiserum coimmunoprecipitation of an XPress
epitope-tagged Roaz protein (XPRoazD86) in the presence of O/E-1
protein (Fig. 4C). XPRoazD86 could be coimmunoprecipitated in the presence of O/E-1 protein and anti-O/E-1 antiserum (lane 2), but not by preimmune serum (lane 1) or when O/E-1
was replaced by pCIS-transfected whole-cell extract (lane
3). XPIC2, an irrelevant polypeptide, could not be
coimmunoprecipitated with O/E-1 by anti-O/E-1 antibody (lane
4), which confirmed the specific interaction between O/E-1
and Roaz.
The region of O/E-1 that interacts with Roaz includes the
helix-loop-helix domain
Regions of O/E-1 involved in specific intermolecular interactions
with Roaz were identified in the yeast two-hybrid interacting assay by
using a series of N-terminal and C-terminal deletion constructs of the
O/E-1/Gal4(DB) fusion. The strength of interaction was determined by a
-galactosidase assay in yeast liquid cultures (Ausubel et al., 1995
)
and expressed as a percentage of the activity induced by intact RoazD86
and O/E-1 (Fig. 5). The interacting domain of O/E-1 was
localized to a 253 amino acid region (aa 240-492), which included the
helix-loop-helix domain (aa 354-391). The level of protein expression
was assessed for each construct by using an anti-Gal4(DB) antibody and
was found to vary less than twofold.
Fig. 5.
Localization of interaction domain of O/E-1 with
Roaz. Yeast strain Y190 expressing GAL4(TA)-RoazD86 was transformed
with constructs encoding C-terminal deletions (cnd),
N-terminal deletions (nnd) of O/E-1, or
OED5 (a partial sequence of O/E-1 cDNA isolated from
original yeast two-hybrid screen) as GAL4(DB) fusions. Double transformants were grown in Leu/Trp drop-out medium before assaying for
-galactosidase activity. The strength of interaction for an
individual mutant is expressed as a percentage relative to that of
intact proteins, which was set at 100% and corresponded to 43 ± 7 U. All measurements were determined from at least four independent
colonies. Numbers in parentheses indicate
the corresponding starting and ending amino acids of the O/E-1
sequence. Previously characterized protein motifs in O/E-1 are
indicated. Zf, Zinc finger; nls, nuclear
localization signal; rhlh, repeat helix-loop-helix motif.
[View Larger Version of this Image (17K GIF file)]
Roaz repressed O/E-1-mediated transactivation
To investigate the role of Roaz in O/E-1 transactivation of
olfactory-specific gene expression, we performed transient
cotransfection and luciferase assays in HEK293 cells. The OMP 2.7 kb
promoter fragment and a 1.6 kb fragment from the ACIII promoter were
cloned into the pGL2-Basic luciferase reporter vectors (pGL-OMP and
pGL-AC3R/B) (Fig. 6A), and activity
was measured when cells were cotransfected with pCIS (lane
1), pCIS-O/E-1 (lane 2), pCIS-GST-Roaz (lane
3), or both (lane 4) (Fig. 6B,
left). We found that O/E-1 alone had moderate transactivational
effect on OMP and ACIII promoter sequences (fold activation above
reporter construct and expression vector cotransfection: 6.5 ± 1.3 for ACIII, 5.8 ± 0.9 for OMP; mean ± SEM,
n = 6). Remarkably, GST-Roaz completely abolished this
effect when cotransfected with pCIS-O/E-1 (1.6 ± 0.5 for ACIII
and 0.8 ± 0.1 for OMP) (Fig. 6B left,
lane 4). There was no difference in luciferase
activity detected when pCIS-GST-Roaz or pCIS was introduced into
cells transfected with the pGL-OMP or pGL-AC3R/B reporter
constructs. The ability of Roaz to inhibit O/E-mediated transcriptional
activation extended to the other members of the O/E family (Fig.
6B, right). The presence of Roaz led to a greater than threefold inhibition of activation on the AC3 and OMP
promoters.
Fig. 6.
Transcriptional activation of O/E binding
site-containing reporter constructs. A, Schematic
representation of reporter constructs containing the type III adenylyl
cyclase promoter (pGL-AC3R/B) and the OMP
promoter (pGL-OMP) is shown. The filled
boxes represent O/E binding sites, and the
arrows represent the transcriptional start sites.
Luc, Luciferase; AAAA, polyadenylation
sequence. B, Luciferase activity assay of the O/E family
proteins on ACIII and OMP promoters. Left panel shows
inhibitory effect of Roaz on O/E-1-mediated transactivation.
Lane 1, pCIS transfection; lane 2,
pCIS-O/E-1 transfection; lane 3, pCIS-GST-Roaz
transfection; lane 4, pCIS-O/E-1 and pCIS-GST-Roaz
cotransfection. Right panel shows a similar effect of
Roaz on O/E-2 and O/E-3-mediated activation. The data are derived from
six independent transfection experiments. Relative luciferase activity
was calculated by dividing the relative light units (RLU) of each
transfection with that of the pCIS expression vector control. The
absolute luciferase activity for each reporter construct cotransfected
with pCIS vector was pGL-AC3R/B, 126,542 RLU; pGL-OMP, 156,119 RLU.
C, Roaz interaction with O/E-1 protein/DNA complex. The
pCIS-XPRoazD86 or pCIS-transfected whole-cell extracts (120 ng) were
mixed with 312.5 ng of pCIS-O/E-1-transfected whole-cell lysate in an
EMSA assay, using synthetic O/E binding site as a probe, and
fractionated on a 6% SDS-PAGE. Quantitative assessment of binding
revealed a 76% reduction of complex formation in the presence of
XPRoazD86 (lane 1).
[View Larger Version of this Image (25K GIF file)]
The transcriptional repression observed could have been attributable to
the loss of O/E-1 DNA binding ability at its cognate site on formation
of a heteromeric complex with Roaz or, alternatively, a direct
repression of O/E-1 transactivational activity by Roaz. To distinguish
among these possibilities, we performed an electrophoretic mobility
shift assay (EMSA) with an O/E binding site-containing oligonucleotide
derived from the OcNC promoter region as a probe. Whole-cell extracts
were prepared from HEK293 cells transfected with pCIS-O/E-1,
pCIS-XPRoazD86, and pCIS. In the presence of XPRoazD86 protein, the
intensity of the O/E-1-containing complex was decreased, and no
additional supershifted complex reflecting a Roaz/O/E-1 heteromeric
complex bound to DNA was detected (Fig. 6C). Additionally,
there was no evidence that XPRoazD86 could bind to the O/E binding site
DNA (our unpublished data).
Roaz and O/E-1 heteromeric complex can transactivate luciferase
activity driven by a minimal SV40 early promoter
In the course of these experiments we used a control plasmid
containing a minimal SV40 early promoter and the luciferase sequence (pGL-P) (Fig. 7A, top). Surprisingly, we
found that cotransfection of the O/E-1 and GST-Roaz expression vectors
with the pGL-P reporter construct increased luciferase activity 67-fold
over basal levels. Neither O/E-1 nor Roaz individually elicited a
similar effect. The same transactivational effect on the SV40 early
promoter also was observed for other O/E family members cotransfected
with Roaz and was dependent on the presence of both factors (Fig.
7A). The observed transcriptional activation suggested that
the heteromeric complex recognized DNA sequences in the SV40 minimal
promoter region. Therefore, a 200 bp XhoI/HindIII
DNA fragment comprising this promoter was isolated from the pGL-P
vector, labeled with [
-32P]dCTP, and used in an EMSA
with purified GST fusion protein of Roaz and O/E-1 (Fig. 7B)
The GST-Roaz protein displayed specific binding to this fragment, which
could be mapped further to the distal 110 bp region by using additional
restriction fragments (Fig. 7B, arrow). The GST-O/E-1
protein (lane 2) failed to produce a complex of the mobility
expected for such a complex. The fast mobility complex (Fig. 7B,
bracket) probably derived from other proteins that were present in
the GST-O/E-1 preparation, which was less pure than the GST protein as
a result of the lower yield of the former in the expression system. No
supershifted bands were observed when purified GST-Roaz and GST-O/E-1
were used in an EMSA with the promoter fragment probe P1, possibly
because the trimolecular complexes of DNA/Roaz/O/E-1 are not
sufficiently stable to be detected in this assay (our unpublished
data).
Fig. 7.
O/E-1 and Roaz interactions with the SV40 early
promoter. A, Top, The pGL-P plasmid
contains a 200 bp SV40 early promoter lacking the enhancer sequence.
SV-P, SV40 early promoter. Bottom, Transcriptional activation of the pGL-P reporter construct was assessed
after cotransfection with pCIS-GST-Roaz and/or the pCIS-O/E expression
vectors. The absolute luciferase activity for each reporter
construct cotransfected with pCIS vector was
pGL-B, 22,975 RLU; pGL-P, 304,316 RLU. B, DNA binding ability of Roaz and
O/E-1 on SV40 early promoter. GST-purified O/E-1 or Roaz (200 ng) was mixed with the indicated probes (p1-p5) in an
EMSA, as shown in this figure. Shifted complexes were fractionated on a
1.5% agarose gel in 0.25× TBE running buffer.
[View Larger Version of this Image (16K GIF file)]
DISCUSSION
The C2H2 zinc finger-containing protein,
Roaz, interacts with O/E-1
Dimerization of proteins into homomeric and heteromeric multimers
plays a pivotal role in the control of gene expression and cell
function. Previous studies have demonstrated that characteristic structural motifs, including leucine zipper (Landschulz et al., 1988
;
Turner and Tjian, 1989
), helix-loop-helix (Murre et al., 1989
;
Anthony-Cahill et al., 1992
), ankyrin (Blank et al., 1992
), PAS domain
(Huang et al., 1993
), Cys4 zinc finger, and Lim/double zinc
finger motifs (Feuerstein et al., 1994
), often mediate these protein-protein interactions. In a search for proteins capable of
interacting with O/E-1 using a yeast two-hybrid screen, we have
identified a rat cDNA, Roaz, encoding a 29 C2H2
zinc finger protein of the TFIIIA type. Here we demonstrate that Roaz
and O/E-1 display specific intermolecular interaction in
vitro and in an eukaryotic cell-based in vivo system.
Moreover, the Roaz protein displays comparable interactions with other
O/E family proteins as assessed in the in vitro binding and
transcriptional activation assays.
A region containing the HLH motif of O/E-1 is necessary to mediate
Roaz/O/E-1 interaction, and a zinc finger motif previously described in
the O/E-1 sequence lies outside of the essential region (Hagman et al.,
1995
). A distinct domain of the Roaz protein containing the last 85 amino acids and three zinc fingers is essential for heterodimerization
with O/E-1, further confirming the specificity of the Roaz/O/E-1
interactions (our unpublished data). All of the interactions described
here occur in the absence of DNA and therefore are likely to represent
direct association of the two proteins.
Roaz serves as a coregulator of O/E-1
The O/E-1 protein has a moderate transactivational effect on
promoter fragments isolated from several olfactory-specific genes containing one or more O/E binding sites and strong activational activity on five concatemeric O/E binding sites and a minimal promoter
(25-fold) (Wang and Reed, 1993
). When Roaz is cotransfected with O/E-1,
it completely abolishes the activational effect of O/E-1 on these
native promoters. The other O/E family members display similar levels
of transcriptional activation on these promoters, and elimination of
transcriptional activation is observed on cotransfection with Roaz.
Roaz may function as a corepressor of O/E-1 by binding to the
transactivational domain of O/E-1, forming a ternary or higher order
complex, as is the case for twist (Spicer et al., 1996
) and
p270 (Horlein et al., 1995
). An alternative possibility is that
formation of a heteromeric complex of Roaz and O/E-1 prevents the
assembly of active O/E-1 homodimers, which recognizes an O/E binding
site. The mapping of the O/E-1 homomeric and heteromeric interaction
domains to an identical region that is distinct from the C-terminal
transactivational domain, combined with the disruption of the O/E-1
protein-DNA complex by Roaz in EMSA, supports the latter hypothesis.
These observations also argue against a role for Roaz as an O/E-1
coactivator.
The transactivational effect of Roaz and O/E-1 on the SV40 early
promoter-driven reporter plasmid strongly suggests that Roaz/O/E-1 heteromultimer possesses DNA binding and transactivational activity at
distinct DNA binding sites. It seems likely that this DNA binding ability is contributed by Roaz in a heteromeric complex with O/E-1, whereas the transactivational activity comes from
O/E-1.
The physiological roles of Roaz
Several lines of evidence suggest that coordinated expression of
genes essential for the terminally differentiated olfactory neuronal
phenotype is achieved via O/E proteins acting at O/E binding sites. The
importance of these sites has been demonstrated in transgenic mice, in
which 300 bp containing the O/E site in OMP promoter is sufficient to
drive olfactory neuron-specific reporter expression, and mutation of
that site disrupts the olfactory-specific pattern (Walters et al.,
1996
). The existence of a family of related O/E proteins expressed in
the olfactory epithelium that display a high degree of functional
redundancy (Wang et al., 1997
) is consistent with an important role for
these factors in olfactory neuronal gene expression and explains the
lack of an observable phenotype when expression of one member is
abolished by gene disruption (Lin and Grosschedl, 1995
). Although we
have described in this paper the interactions between Roaz and the
canonical member of the O/E protein family O/E-1, the existence of
similar interactions with the other members of the O/E family expressed
in the olfactory epithelium is consistent with the importance of Roaz
in the pathway of O/E-regulated gene expression.
The onset of O/E-1 expression at E11.5 in the developing mouse
olfactory epithelium significantly precedes OMP expression (E16) as
well as the appearance of other terminally differentiated markers
(Margalit and Lancet, 1993
). In adult olfactory tissue O/E-1 message
and protein are found in the immature cells (NCAM+,
OMP
) (Calof and Chikaraishi, 1989
) as well as in the
mature receptor neurons (OMP+) (Wang and Reed, 1993
). In
addition, O/E binding activity is higher in the young animal and
increases after bulbectomy (Kudrycki et al., 1993
). These observations
suggest that O/E-1 expression is regulated with a time course different
from OMP during embryonic development and in the continual
proliferation of ORNs in the adult tissue. These observations suggest
that additional factors interacting with O/E proteins might account for
these differences either by negatively regulating O/E activity in
precursor cells or by functioning as a coactivator in the mature
neurons.
The properties of Roaz, including its interaction with O/E proteins and
its ability to inhibit the O/E-mediated transactivation, suggest that
it functions as an inhibitor. It is particularly striking that the
expression of Roaz in the olfactory epithelium (see Fig. 3) is found in
a population of cells that contain O/E-1 message but fail to express
the targets of this transcription factor. Thus, Roaz resolves the
paradox between the expression of O/E-1 in the epithelium and the
delayed expression of target genes. Negative regulators such as
mammalian hairy and enhancer of split homolog-1 (HES-1) and
twist are involved in switching cells from a proliferative
to differentiated state in the developing cortex and myoblast lineage,
respectively (Baylies and Bate, 1996
; Nakao and Campos-Ortega, 1996
;
Tomita et al., 1996
). They share the common features of being expressed
in the dividing precursor cells and functioning to repress the
transactivational activity of proteins in the bHLH family. Negative
regulators are important not only for preventing premature
differentiation but also for coordinating the timing of
differentiation. The induction of O/E protein expression before the
onset of its known target genes has additional advantages. It allows
build-up of protein in the cell so that once the inhibitor protein is
removed, transcriptional activation can proceed readily. The induction
of transactivation by O/E-1 and Roaz heterocomplex on the SV40 early
promoter further suggests that it may act as a positive regulator at
distinct sites during neurogenesis. A similar effect also has been
described for twist in Drosophila (Baylies and
Bate, 1996
; Spicer et al., 1996
).
The ability of Roaz to mediate specific interactions with DNA and with
heterologous proteins suggests a model in which Roaz serves several
distinct roles in transcriptional regulation (Fig. 8).
The transcriptional activator complex composed of O/E homodimers functions at mature neuronal marker gene promoters. In immature neurons, Roaz complexes with the O/E factors and inhibits
transcriptional activation at the O/E DNA recognition site by
sequestering the O/E protein and preventing formation of an active
DNA-binding O/E homodimer. The heteromeric complex of O/E and Roaz
possesses transcriptional activation activity at distinct sites where
DNA binding is mediated by the Roaz protein. The expression of Roaz in
adult tissues that do not express O/E protein suggests that, in
addition to switching cells from a proliferative to differentiated state, Roaz may have distinct activities arising from the action of
Roaz binding as a homodimer at specific DNA sequences (our unpublished
data), where it may function as a repressor or as a transcriptional
activator by association with coactivating factors present in
particular cell types.
Fig. 8.
A model for the transregulatory function of
Roaz.
[View Larger Version of this Image (13K GIF file)]
In conclusion, the C2H2 zinc finger protein
Roaz can dimerize with a helix-loop-helix protein O/E-1 both in
vitro and in cell-based expression systems. The Roaz/O/E-1 protein
complex functions as a negative regulator on native O/E-binding
site-containing promoters while retaining the ability to bind to other
DNA sequences and to function as a transcriptional activator. These
activities suggest that Roaz may play a pivotal role as a switch
protein in the regulation of O/E-1 transcriptional activity and the
control of olfactory neuronal differentiation.
FOOTNOTES
Received Jan. 22, 1997; revised March 12, 1997; accepted March 19, 1997.
We thank Mengqing Xiang for his helpful suggestions in the course of
this work; Jim Boulter and Mike M. Wang for their generous gifts of
cDNA libraries; Steven J. Elledge for kindly providing y190 yeast
strain and Song S. Wang for O/E-2 and O/E-3 plasmids; and Janine S. Davis, Jeremy Nathans, Stephen Desiderio, and other members of the Reed
laboratory for their invaluable comments on this manuscript.
Correspondence should be addressed to Dr. Randall R. Reed, Room 800 Preclinical Teaching Building, The Johns Hopkins University School of
Medicine, 725 North Wolfe Street, Baltimore, MD 21205.
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