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Volume 17, Number 4,
Issue of February 15, 1997
pp. 1363-1376
Copyright ©1997 Society for Neuroscience
Neuropeptide Amidation in Drosophila: Separate Genes
Encode the Two Enzymes Catalyzing Amidation
Aparna S. Kolhekar1,
Marie S. Roberts2,
Ning Jiang2,
Richard C. Johnson1,
Richard E. Mains1,
Betty A. Eipper1, and
Paul H. Taghert2
1 Departments of Neuroscience and Physiology, The Johns
Hopkins University School of Medicine, Baltimore, Maryland 21205, and 2 Department of Anatomy and Neurobiology, Washington
University Medical School, St. Louis, Missouri 63110
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
FOOTNOTES
REFERENCES
ABSTRACT
In vertebrates, the two-step peptide -amidation reaction is
catalyzed sequentially by two enzymatic activities contained within one
bifunctional enzyme called PAM (peptidylglycine -amidating mono-oxygenase). Drosophila head extracts contained both of
these PAM-related enzyme activities: a mono-oxygenase (PHM) and a lyase (PAL). However, no bifunctional PAM protein was detected. We identified cDNAs encoding an active mono-oxygenase that is highly homologous to
mammalian PHM. PHM-like immunoreactivity was found within diverse larval tissues, including the CNS, endocrine glands, and gut
epithelium. Northern and Western blot analyses demonstrate RNA and
protein species corresponding to the cloned PHM, but not to a
bifunctional PAM, leading us to predict the existence of separate
PHM and PAL genes in Drosophila. The
Drosophila PHM gene displays an organization of exons that
is highly similar to the PHM-encoding portion of the rat PAM
gene. Genetic analysis was consistent with the prediction of separate
PHM and PAL gene functions in
Drosophila: a P element insertion line containing a
transposon within the PHM transcription unit displayed
strikingly lower PHM enzyme levels, whereas PAL levels were increased
slightly. The lethal phenotype displayed by the dPHM P
element insertion indicates a widespread essential function. Reversion
analysis indicated that the lethality associated with the insertion
chromosome likely is attributable to the P element insertion. These
combined data indicate a fundamental evolutionary divergence in the
genes coding for critical neurotransmitter biosynthetic enzymes: in
Drosophila, the two enzyme activities of PAM are encoded by
separate genes.
Key words:
neuropeptide biosynthesis;
Drosophila;
-amidation;
PAM;
PHM;
genetics;
P element
INTRODUCTION
Neuropeptides are produced by a series of
enzymatic steps that sequentially cleave and further modify larger
precursor molecules (for review, see Sossin et al., 1989 ; Rouille et
al., 1995 ; Seidah, 1995 ). Several of the enzymes that mediate these
steps have been identified (Roebroek et al., 1991 ; Eipper et al., 1993 ;
Lindberg and Zhou, 1995 ; Rouille et al., 1995 ). A significant
modification is the enzymatic transformation of the COOH-terminus in
many biosynthetic peptide intermediates from a glycine to an -amide;
this modification frequently is required for the biological activity of
the peptides (for review, see Eipper et al., 1992 ). Amidation occurs on
approximately one-half of the known bioactive neuropeptides, and
secretory peptides are nearly the exclusive substrates for
-amidation. Amidation of peptides first can be detected in the
trans-Golgi network and is one of the final steps in
neuropeptide biosynthesis. It is, therefore, prevalent and functionally
important to a broad class of neuropeptide messengers. In addition,
-amidation may be a rate-limiting step in the production of
neuropeptides: glycine-extended forms of several neuropeptides exist
in vivo in measurable quantities (for review, see Eipper et
al., 1992 , 1993 ). Amidation may, therefore, represent a point of
regulation for neuropeptide biosynthesis.
In animals as diverse as hydra, Drosophila, and man, the
precursors of amidated neuropeptides contain a Gly residue immediately C terminal to the site of amidation (Nambu et al., 1988 ; Nichols et
al., 1988 ; Schneider and Taghert, 1988 ; Nassel, 1994 ; Grimmelikhuijzen and Westfall, 1995 ). Peptide -amidation is a two-step reaction: first, the glycine-extended peptide substrate is hydroxylated by
peptidylglycine- -hydroxylating mono-oxygenase (PHM) (Perkins et al.,
1990 ; Tajima et al., 1990 ). Cleavage of the intermediate to form
the final -amidated peptide product (and glyoxylate) is catalyzed by
a second enzyme, peptidyl -hydroxyglycine- -amidating lyase (PAL)
(Eipper et al., 1991 ; Katopodis et al., 1991). PHM and PAL are
cosynthesized as adjacent domains of the bifunctional peptidylglycine- -amidating mono-oxygenase (PAM) precursor (see Fig.
1). In the rat, human, bovine, and frog, the
PAM gene produces an array of soluble and
membrane-associated proteins as a result of differential RNA splicing
and protein modification (Ouafik et al., 1992 ). PHM shares significant
sequence homology with dopamine -mono-oxygenase (DBM), a key enzyme
in catecholamine production (Southan and Kruse, 1989 ). The
Drosophila DBM homolog, tyramine -hydroxylase (TBH),
recently was cloned and studied genetically (Monastirioti et al.,
1996 ). It is absolutely required for the production of the transmitter
octopamine and mutates to display a female-sterile phenotype. DBM and
TBH are both monofunctional enzymes and do not include a region
homologous to PAL.
Fig. 1.
Structure and function of vertebrate PAM proteins.
Bifunctional rat, integral membrane PAM (PAM-1), and soluble
monofunctional PHM (PAM-4) are shown, with the region
homologous to dopamine -mono-oxygenase marked (filled
box). The functional domains are indicated: PHM,
mono-oxygenase; PAL, lyase; TMD, transmembrane domain; CD, COOH-terminal cytoplasmic domain. The
catalytically important conserved Histidine clusters used to design the
PCR primers are indicated also. The catalytic requirements and the reactions catalyzed by PHM and PAL are shown at the
bottom.
[View Larger Version of this Image (18K GIF file)]
We have turned to Drosophila to use genetics to define
PAM gene functions and regulation in vivo.
Neuropeptides are important signaling molecules in insects, and
-amidated neuropeptides are as prevalent in insects as they are in
vertebrates. More than 90% of the reported insect neuropeptide
sequences (from both peptide and DNA sequence analysis) contain or
predict amidated C termini. Several amidated peptides have been
purified from Drosophila (Nambu et al., 1988 ; Schaffer et
al., 1990 ; Nichols, 1992a ,b); the presence of many other amidated
peptides has been deduced from the structure and expression of several
Drosophila neuropeptide genes (Nichols et al., 1988 ;
Schneider and Taghert, 1988 ; Taghert and Schneider, 1990 ; Veenstra,
1994 ). Although we found that Drosophila contains both PHM
and PAL enzyme activities, we made the unexpected finding that this
insect contains separate PHM and PAL genes. We
report the structure and expression of the dPHM gene and
properties of expressed dPHM protein. We use this information to
initiate a molecular genetic analysis of neuropeptide biosynthesis by
demonstrating a lethal phenotype associated with a P element insertion
that disrupts the dPHM gene.
MATERIALS AND METHODS
Molecular biology and Drosophila techniques.
Standard molecular biology and Drosophila laboratory
techniques were performed according to Sambrook et al. (1989) and
Ashburner (1989) .
Fly strains. Deficiency stocks [Df(2R)or-BR11,
Df(2R)or-BR6, Df(2R)G10-7-5,Df(2R) bw-S46, Df(2R)egl2, and Df(2R)Px1]
were obtained from the Bloomington Stock Center. P element insertion lines were obtained from the Bloomington Stock Center [PZl(2)00628, PZl(2)02970, PZl(2)05006, PZl(2)ken[1], TE(w+)47] and
from the Berkeley Drosophila Genome Project [l(2)06003, l(2)09201, l(2)01015, l(2)04209, l(2)04405, l(2)04201, l(2)07623, l(2)03101, l(2)k13409].
Tissue extraction and enzyme assays. Drosophila
heads were homogenized and extracted with 20 mM Na TES, pH
7.4 and 10 mM mannitol in the presence of protease
inhibitors (Husten and Eipper, 1991 ; Kolhekar et al., 1997 ). Insoluble
pellets were resuspended in the above mixture with the addition of
1.0% Triton X-100. The soluble and detergent-extracted proteins were
fractionated on a Superose 12 column, and the fractions were assayed
for PHM and PAL as described by Husten and Eipper (1991) .
RNA extraction and RT-PCR analysis. Pelleted cells from a
dense 20 ml culture of shibere (shi) cells were
extracted into RNAStat60 (Tel-Test B). Reverse transcription was
performed at 42°C using 2 µg of total RNA, AMV reverse
transcriptase (Promega, Madison, WI), and a degenerate PHM/DBM
antisense primer (rPAM 1244-1231) [5 -NNRCACATYTCNTC-3 ]. PCR
amplification was performed (35 cycles) using Taq polymerase (2.5 units; Boehringer Mannheim, Indianapolis, IN), 2 µl of the reverse
transcription, and degenerate sense [rPAM(607-624)] and antisense
[rPAM(1037-1021)] primers:
[5 -GG GAYACTGYNCAYCAYATG-3 , (EcoRI
site underlined)] and
[5 -GG CCTAANTGRTGNGTRTG-3 (XbaI site
underlined)], respectively. Denaturation was performed at 94°C for 1 min with annealing at 55°C for 2 min and extension at 72°C for 3 min. Adult head RNA was extracted with RNAzol (Bio-Tek, Burlingame, CA)
after homogenization. Poly(A)+ RNA was selected with the
oligotex mRNA kit (Qiagen, Hilden, Germany). RNAs were fractionated
with formaldehyde-agarose gels and blotted to Nytran (Schleicher & Schuell, Keene, NH) according to the manufacturer's
recommendations.
Antibody production and purification. The dPHM
cDNA 1 was cloned into the pET-11 (Novagen, Madison, WI) expression
vector and expressed in BL21 (DE3) bacteria, which were induced for 3 hr with 0.4 mM IPTG. Recombinant dPHM protein was
size-fractionated on a column of Bio-Gel A-0.5m (Bio-Rad, Richmond, CA)
in 50 mM Na-HEPES, pH 7.4, containing 0.05% SDS and used
to immunize rabbits. Immune serum was affinity-purified using an
Affigel 15 matrix (Bio-Rad) according to the manufacturer's
recommendation. Eluted antibodies were stored in PBS containing 0.8 mg/ml BSA and 0.1% sodium azide.
Immunocytochemistry. Larval CNS were dissected in saline and
fixed overnight at 4°C in a solution containing one part Bouin's and
four parts 4% paraformaldehyde (in PBS, pH 7.4). For double-labeling experiments (to stain both lacZ- and PHM-like immunoreactivities), the
fixative was one part Bouin's and nine parts 4% paraformaldehyde. After washes in PBS containing 0.3% Triton X-100, tissues were stained
in whole mount according to general procedures that were previously
described (Taghert and Schneider, 1990 ). Anti- galactosidase monoclonal antibodies were purchased from Promega and used at a 1:1000
dilution. Cy-3-, Texas Red-, FITC-, and HRP-conjugated antibodies were
purchased from Jackson Laboratories (Bar Harbor, ME) and were used at a
1:200 dilution.
Western blot analysis. Proteins fractionated by Superose 12 column chromatography (see above) were studied further by acrylamide gel electrophoresis and Western blot analysis. Proteins were
transferred to Immobilon P membrane (Millipore, Bedford, MA); signals
were developed using HRP-conjugated anti-rabbit antibodies and
chemiluminescence techniques according to the manufacturer's
recommendations (Amersham, Arlington Heights, IL) (Eipper et al.,
1995 ).
Chromosome squashes and hybridization. Approximately 1 µg
of M7 phage DNA was biotin-labeled using the Bionick kit (Amersham) according to the manufacturer's recommendations. Hybridization was
followed by use of the Detek-Hrp detection system (Enzo
Diagnostics).
Microscopy and photography. Preparations were examined at
200- 630×, using Nomarski optics on a Zeiss Axioplan microscope, and photographed with Ektachrome 400 or Kodachrome 64 film. Fluorescent preparations were examined on a Max Olympus microscope, and images were
captured using an MTI Sit camera and NIH image software. Images were
colorized and assembled in Adobe Photoshop.
Inverse PCR. Genomic DNA from P element stocks was prepared
and digested with either HinP1 or Sau3AI; these
enzymes cut at defined sites within the P element and at unknown sites
within the genomic DNA flanking each insertion site. After
phenol/chloroform extraction and precipitation, DNA was ligated in 100 µl at 16°C overnight using T4 DNA ligase and then used as template
for 40 cycles of inverse PCR. For the right end of the transposon, we used the outer primer P-PCR [5 ,CGACGGGACCACCTTATGTTATTTCATCATG] that
recognizes the 5 and 3 terminal ends and the inner primer P-ry
[5 ,GATTGTTGATTAACCCTTAGCATGTCCGTG]. For the left end, we used P-PCR
as outer primer and the P-lac oligonucleotide
[5 ,AGCTGGCGTAATAGCGAAGAGGCCCGCA] as the inner primer. PCR was
performed with 0.1-0.4 fly equivalents and 0.1 µl of KlenTaq (Wayne
Barnes, Washington University Medical School, St Louis, MO) in a 50 µl reaction. PCR was monitored by analyzing 20% of the sample on a
1% agarose gel, where a single strong band often could be visualized.
Of this complex reaction, 10% was radiolabeled with 32P by
random hexamer priming and used to probe blots of restricted phage
and P1 phage containing ~15 to ~100 kb of genomic DNA from the 60AB
region.
Direct PCR. We used a P element primer (P-PCR) and primers
from Drosophila PHM sequences (called 280:
5 ,AAACGTTGGGCATCAGGA, and called 380: 5 ,GTTCATCGTGGCATTAGG) in 35 cycles of direct PCR to amplify flanking regions that were suspected to
lie within the PHM gene. The PHM oligonucleotide
names derive from their positions within PHM cDNA 1. Reactions contained 0.4 fly equivalents of genomic DNA and 0.1 µl of
KlenTaq in a volume of 50 µl.
RESULTS
Drosophila extracts contain both PHM and PAL
enzyme activities
In vertebrate systems, peptide -amidation occurs via two
sequential enzymatic steps. These steps are catalyzed by a
mono-oxygenase and a lyase that are cosynthesized as adjacent domains
of the PAM gene product (Fig. 1). We screened
Drosophila adult head extracts for the presence of the two
enzyme activities, PHM and PAL. Both soluble and detergent-extracted
proteins were fractionated by gel filtration and assayed for enzyme
activity using the synthetic tripeptide substrates
-N-acetyl-Tyr-Val-Gly or
-N-acetyl-Tyr-Val- -hydroxyglycine (Perkins et al.,
1990 ) (Fig. 2). We detected a single peak of PHM
activity, with an apparent molecular mass of 35 kDa, in both extraction
conditions (Fig. 2A). The amount of soluble
Drosophila PHM activity was much greater than the amount of
dPHM activity extracted from the insoluble pellet on addition of
detergent. We also detected a single peak of PAL activity with an
apparent molecular mass of 45 kDa (Fig. 2C); most of the PAL
activity was recovered in the soluble fraction, with little additional
PAL activity present after detergent extraction of the insoluble
fraction of adult heads. Thus, both of the enzymatic activities
involved in peptide amidation in vertebrate systems are detectable in
Drosophila tissues. In addition, the apparent molecular
masses of the Drosophila PHM and PAL activities correspond
closely to those of the PHM and PAL catalytic cores previously
identified in tryptic digests of rat PAM (Husten et al., 1993 ).
Activity was not associated with a protein large enough to include PHM
and PAL. Although assays of vertebrate tissue extracts, under the
conditions used here, generally yield several-fold more PAL activity
than PHM activity, Drosophila extracts consistently yielded
less PAL activity than PHM activity.
Fig. 2.
Size exclusion chromatography. A,
PHM activity in various fractions from a Superose 12 FPLC purification
in the presence or absence of detergent. B, Western blot
analyses of the fractions from the two analyses in A, using
the anti-dPHM antiserum. To correct for the lower activity in the
detergent extracts, we analyzed a larger volume of sample.
C, PAL activity in the same fractions as in A.
The size markers that bracket the enzyme activities are shown: BSA, bovine serum albumin, 69 kDa; CA,
carbonic anhydrase, 30 kDa. A protein the size of mammalian integral
membrane PAM-1 is expected to elute in fractions 17-19.
[View Larger Version of this Image (33K GIF file)]
As described below, we identified a Drosophila gene
encoding a PHM protein (dPHM). We raised two rabbit polyclonal antisera to purified recombinant dPHM protein and used them to analyze the
fractions obtained by gel filtration of adult head homogenates (Fig.
2B). We found an excellent correspondence of the
fractions containing an ~35 kDa PHM-like immunoreactive protein and
the fractions exhibiting PHM activity. The only immunoreactive
fractions were those that also contained enzymatic activity. Together
this evidence stands against the possibility that larger molecular weight forms of PHM (i.e., precursors containing both PHM and PAL
enzymatic domains) are prevalent in Drosophila head.
We also found both PAM-related enzyme activity in the Drosophila
shi (shibere) cell line (data not shown). Tublitz et
al. (1994) previously found that these cells contain a
cardioaccelerating biological activity that resembles the activity of
neurally derived cardioactive peptides of various insects, including
Drosophila. This suggested the presence of bioactive
peptides in shi cells that also could be amidated. The
shi cells are thought to derive from the paired exit glial
cells that lie in each of the segmental, dorsomedial neurohemal organs
of the ventral ganglion (Chiang et al., 1994 ).
Properties of the Drosophila enzyme PHM
Using the peak fractions from the Superose column, we compared the
properties of Drosophila PHM to the properties of rat PHM (Husten and Eipper, 1991 ) (Fig. 3). Vertebrate PHMs all
require copper and exhibit acidic pH optima (Eipper et al., 1993 ,
1995 ). The Drosophila PHM also required copper, with an
optimal copper concentration from ~0.5 to 2 µM. The pH
optimum for dPHM was ~5.0, and its optimal ascorbate concentration
was ~0.5 mM. These values are very similar to those
described for all of the vertebrate PHMs (Eipper et al., 1993 , 1995 ).
We performed kinetic studies to determine the affinity of dPHM for its
substrate (Fig. 3D). The data obtained followed
Michaelis-Menton kinetics; the Km of dPHM for
-N-acetyl-Tyr-Val-Gly was 2.2 ± 0.1 µM. By comparison, the Km of
bovine PHM for the same substrate was 10 ± 2 µM
(Eipper et al., 1991 ). Vertebrate PAL requires the presence of a
divalent ion for activity, although the specificity of this requirement is not so great as that of vertebrate PHM for copper (Eipper et al.,
1991 ). dPAL activity was broadly sensitive to divalent metal ions, but
its profile of sensitivity differed from that of mammalian PAL (data
not shown).
Fig. 3.
The peak fractions from a superose 12 column
containing partially purified dPHM were assayed. A, Copper
concentration was varied in the presence of 0.5 mM
ascorbate, 0.1 mg/ml catalase, and 100 mM Na MES, pH 5.0, at a substrate concentration of 0.5 µM Ac-YVG.
B, pH was varied using 100 mM Na MES buffer of
the indicated pH in the presence of 1.0 µM
CuSO4, 0.5 mM ascorbate, and 0.1 mg/ml catalase
at a substrate concentration of 0.5 µM Ac-YVG.
C, Ascorbate concentration was varied in the presence of 1.0 µM CuSO4, 0.1 mg/ml catalase, and 100 mM Na MES, pH 5.0, at a substrate concentration of 0.5 µM Ac-YVG. D, Eadie-Hofstee plot for dPHM
using Ac-YVG as the substrate (0.5-16 µM) in the presence of 1.0 µM CuSO4, 0.5 mM
ascorbate, 0.1 mg/ml catalase, and 100 mM Na MES, pH 5.0. Numbers are means from assays performed in quadruplicate.
The entire experiment was performed two times with similar
results.
[View Larger Version of this Image (26K GIF file)]
Identification of a Drosophila PHM cDNA
Given the presence of enzyme activities in tissue and
shi cell extracts, the size, properties, and catalytic
requirements of which were similar to vertebrate PHM and PAL, we
undertook a search for the Drosophila gene(s) encoding these
activities. Initially, we found relevant sequences using RNA from the
shi cell line. We used a PCR strategy that was based on the
use of three degenerate primers chosen from previous
structure-function analyses of PHM and DBM (Stewart and Klinman, 1988 ;
Eipper et al., 1995 ) (see Fig. 1). In this way, we isolated a single
fragment of the expected size: sequence analysis indicated the presence of key features characteristic of PHM, and the fragment subsequently was used to identify a longer insert (cDNA 1) from a shi
cell cDNA library. This putative dPHM cDNA clone was 1424 bp
in length [including a poly(A) tail of 27 nucleotides] and encodes a
protein with an open reading frame of 365 amino acids (Fig.
4).
Fig. 4.
Sequence of PHM cDNA 1 recovered from a
shibere cDNA library. The deduced protein sequence of the
longest open reading frame is listed below the DNA sequence.
Exon boundaries are indicated and are based on comparison to genomic
sequence; underlined dinucleotides represent the last and
first base, respectively, of adjacent exons. P[07623]
indicates the position of a P element insertion (described in later
figures); the 8 bp in italics at this position are
duplicated in the insertion stock. Conserved cysteine residues are
marked by arrowheads; two conserved Histidine-rich clusters
are marked by boxes.
[View Larger Version of this Image (56K GIF file)]
The deduced protein begins with a hydrophobic NH2
terminus that has the properties of a signal sequence and displays a
great deal of similarity to vertebrate PHMs (Fig. 5).
Over the catalytic core of the enzyme, there is 40% sequence identity
between rat and Drosophila PHM and complete identity
extending up to nine consecutive residues. Other notable features of
similarity include (1) eight cysteine residues found in homologous
positions in all PHMs and DBMs, and (2) two histidine-rich sequence
clusters (HHM, aa 95-97, and HTH, aa 241-243) that are thought to be
important for the binding of copper to the mono-oxygenase (Eipper et
al., 1995 ). The presence of several other highly conserved regions suggests that these regions play a previously unrecognized role in
catalysis. A stop codon occurs immediately past what is recognized as
the catalytic core of rat PHM and is followed by a 201 nucleotide 3 -untranslated region and a poly(A)+ tail of 27 nucleotides. Although clearly encoding a PHM protein, the
Drosophila cDNA encodes a monofunctional enzyme. No cDNAs encoding bifunctional PAM proteins were identified in the
shi cell cDNA library.
Fig. 5.
Comparison of PHM protein sequences. The predicted
protein sequence of dPHM is compared with that of PHMs from various
vertebrate species. Shaded residues indicate identity
between the insect and any of the vertebrate species listed. PHM
sequences from GenBank; references in Eipper et al. (1992 , 1993) .
[View Larger Version of this Image (107K GIF file)]
Activity of Drosophila PHM in heterologous cells
We tested the functional properties of the dPHM protein after its
expression in either of two heterologous cell lines. We transiently
transfected dPHM cDNA 1 into hEK-293 cells and into CHO
cells; we assayed cell extracts and medium and found PHM activity in
both (Fig. 6). No PAL activity was detected. A cDNA
encoding rat PHM was expressed for comparison. Similar amounts of PHM
activity were observed after expression of vector encoding rPHM or
dPHM. Adjusted for the volumes of extracts and medium, the rate of
secretion of enzyme activity over the 9 hr secretion period was 12% of
cell content per hour for both Drosophila and rat PHM. Thus
the dPHM gene encoded an active, monofunctional secreted PHM
enzyme.
Fig. 6.
Functional expression of the cloned
Drosophila PHM cDNA. The cDNA 1 was subcloned into the
pCIS.2CXXNH mammalian expression vector, and transient expression was
performed with hEK-293 and CHO cells. Both cell lines produced activity
in each of two experiments. The results from one experiment with
hEK-293 cells are presented here, as the average of duplicates in the
single assay. Error bars show range.
[View Larger Version of this Image (24K GIF file)]
Expression of the dPHM gene in
Drosophila heads
We used shi cell cDNA 1 as a probe to isolate three
distinct cDNAs from an adult Drosophila head cDNA library;
the sizes of each were very similar to that of cDNA 1. Sequence
analysis revealed the cDNAs differed only in the extent of 5 or 3
untranslated sequence; each encoded the same 365 amino acid
monofunctional PHM protein. The shi cell cDNA 1 contains the
longest 5 untranslated region and is the only cDNA in the set that
includes a poly(A) tail at its 3 end. cDNA 14 (from adult head)
contains an additional 93 bp of 3 untranslated sequence, i.e., past
the point of polyadenylation in cDNA 1; this additional 3 sequence is
found contiguously within genomic sequence and so likely indicates
alternative sites of polyadenylation and not alternative RNA splicing
among dPHM transcripts (see below).
RNA blot analyses of both the shi cell line and adult head
indicated the presence of a single PHM transcript size class of ~1.7
kb (Fig. 7A). The Northern blot results are
consistent with the hypothesis that the cDNAs so far defined are
representative of the prevalent PHM RNAs. Vertebrate mRNAs
encoding bifunctional PAM proteins are 4-4.5 kb (Eipper et al., 1992 );
the Drosophila transcripts identified with an authentic
PHM probe are not long enough to encode both PHM and PAL. We
did not find any evidence of higher molecular weight transcripts in
Drosophila.
Fig. 7.
A, Northern blot analysis of
dPHM RNAs. Left, Total RNA (5 µg) derived from
the shi cell line and probed with PHM cDNA 1. Right, Poly(A)+ RNA (10 µg) derived from adult
head and probed with PHM cDNA 11. Both experiments reveal
signals derived from a 1.6-1.8 kb class of RNAs. B,
Southern blot analysis of Drosophila genomic DNA. In this
experiment, 10 fly equivalents were restricted with each of the enzymes
listed and loaded into individual lanes. The blot was probed with
dPHM cDNA 11. The signals generated are consistent with the
presence of a single dPHM locus. B,
BamHI; H, HindIII; P,
PstI; E, EcoRI.
[View Larger Version of this Image (41K GIF file)]
The structure of the dPHM gene
Southern blot analysis, using the shi cell
dPHM cDNA 1 as probe, indicated dPHM sequences
are present in single copy in the haploid Drosophila genome
(Fig. 7B). With the same probe, we found genomic sequences
that corresponded to all available dPHM cDNAs within a
single genomic phage, called M7. We used blotting and sequence analysis
to identify exon boundaries (see Fig. 4) and to define the organization
of this gene (Fig. 8). Although we lack precise
definition of the dPHM start site, the gene contains at
least eight exons.
Fig. 8.
Gene organization indicates Drosophila
PHM and rat PAM are closely related genes. Rat
PAM-4 was chosen for comparison because its use of an
alternate poly(A)+ addition site means it encodes a
monofunctional PHM protein (Eipper et al., 1993 ). The shaded
areas within the exons indicate the approximate boundaries of the
protein-coding sequences. Because the 5 end of the
Drosophila gene has not been mapped precisely, the exon
marked number 1 may not be the very first. Brackets
above and below the genes indicate the difference in
total locus size. In this schematic, the relative size proportions of
exons have been preserved, whereas those of introns are not to
scale.
[View Larger Version of this Image (27K GIF file)]
Comparison of the exon/intron structure of dPHM to that of
the PHM domain of the rat PAM gene (Fig.
8B) indicates a highly similar organization. Six of
the seven introns in dPHM occur within identical amino acids
to those containing introns in mammalian PAM. A further
similarity is found on examination of the intron junctions: exons are
interrupted by introns that occur between codons (type 0) or within
them (type 1, after one nucleotide; type 2, after two nucleotides). In
the case of PHM, the rat and Drosophila genes
have comparable "types" at all six conserved intron junctions.
Unlike the rat PHM sequences, which map over more than 76 kb
(Ouafik et al., 1992 ), sequences encoding the dPHM open
reading frame extend over only ~3 kb of genomic DNA. We have found no
evidence for the occurrence of alternative splicing in the
dPHM gene. Also, standard low stringency screening methods failed to detect the presence of PAL-encoding sequences near (i.e., within ~10 kb) the identified PHM gene. Thus, the
dPHM gene seems highly homologous to the mammalian
PAM gene, except in lacking a PAL-encoding domain.
Genetic evidence for separate PHM and
PAL genes
We identified a P element insertion line within the PHM
gene and measured PHM and PAL enzyme levels in that mutant background. We first assigned the PHM gene position to the interval 60A12-16, at
the end of chromosome arm 2R by hybridization to polytene chromosomes. To confirm this assignment, we analyzed available chromosomal deficiencies of the 59-60 interval by Southern blot analysis: we found
that dPHM is deleted in each of two overlapping
deficiencies, Df(2R)G10-7-5 and Df(2R)orBr-6, but not in several other
deficiencies in the region (data not shown). We analyzed 13 P element
stocks of the 60A/B interval by inverse PCR for the closest possible insertion. Among these, the flanking sequence of a single line, P[07623], hybridized uniquely to the dPHM genomic phage
M7: this suggested an insertion within 8 kb of the PHM
gene.
We next used direct PCR, restriction, and sequence analysis of PCR
products to place the P[07623] insertion within the dPHM open reading frame (Fig. 9). The host sequence at the
insertion (Fig. 9A) includes an 8 bp target site duplication
that is characteristic of P element integrations (O'Hare and Rubin,
1983 ); the precise insertion site is located near the end of the
predicted signal sequence of the pre-PHM protein (Fig. 9B).
To confirm the location of this element within the P[07623] stock
independently, we used Southern blot analysis of total genomic DNA and
found specific polymorphisms that were consistent with that prediction
(Fig. 10).
Fig. 9.
The P[07623] insertion maps within the
PHM gene. A, Partial representation of DNA
sequence analysis indicates the precise position of the P insertion and
the presence of an 8 bp repeat of host sequence (bp 151-159, marked by
double horizontal bars) flanking its ends. B, The
position of the P insertion within the transcription unit is indicated
in the map of dPHM exons.
[View Larger Version of this Image (22K GIF file)]
Fig. 10.
Genomic Southern blot analysis of several
Drosophila stocks with a PHM gene probe. An
~1.4 kb R1 fragment was used to probe PstI- and
EcoRI-digested genomic DNAs from each of three separate stocks. Lanes A and D (w-; Sco/SM6) represent the
background stock. Lanes B and E (w-;
P[07623]/SM6) represent the P[07623] insertion heterozygous to the
SM6 balancer chromosome. Lanes C and F (w-; R2-P[07623]/SM6) represent a viable revertant stock of P[07623]. The schematic to the right presents an interpretation of the
hybridization pattern according to the restriction map of
EcoRI sites. The asterisks and arrows
mark the polymorphic bands consistent with the presence of the P
element in the dPHM gene. The positions of the bands from
the EcoRI digest are included in the schematic; the
single asterisk indicates the presence of a polymorphism
predicted in PstI-digested DNA in the ~9 kb range. Note
the restoration of the background pattern of hybridization in the
revertant stock.
[View Larger Version of this Image (24K GIF file)]
We asked whether PHM protein expression was affected by this
insertional mutation. Because the insertion displays homozygous lethality (see below), we tested PHM protein levels in heterozygous adult heads. We assayed PHM and PAL levels in three stocks: in P[07623], in a distinct insertion stock also of the 60A region, P[03101], and in a control stock that also contained a second chromosome balancer. PHM enzyme levels were reproducibly lower in
heterozygous P[07623] animals by about twofold (Fig.
11). Interestingly, PAL levels were elevated in this
insertion line so that the PHM/PAL ratio was lowered further. Thus, the
P[07623] insertion severely reduces the expression of PHM levels in
heterozygous animals, without concomitant reduction of PAL levels, as
predicted by a two-gene hypothesis.
Fig. 11.
Enzyme activity measurements in P element
insertion stocks [07623] and [03101] compared with a balancer
control stock. PHM and PAL activity levels in adult head homogenates
were measured in several independent experiments; here five
measurements of PHM and four measurements of PAL were used to compose
these histograms. t tests were calculated using Excel.
CyO refers to the Curly Oster second chromosome
balancer; Sco refers to a marked second chromosome bearing a
mutation of the Scutoid locus; SM6 is a second
chromosome balancer.
[View Larger Version of this Image (29K GIF file)]
A lethal phenotype associated with the dPHM P
element insertion
The P[07623] stock is homozygous lethal, and the lethality
segregates with the second chromosome. Further, complementation analyses with the available panel of 60AB mutant stocks (deficiencies and P element insertions) indicated that all other P insert lines complemented P[07623], as did all but three deficiency stocks (Table
1). These complementation data are consistent with the assignment of PHM to the 60A12-16 interval that was based
on molecular information, and they localize the lethality associated
with the P[07623] insertion line to the region of overlap between the
two deficiency stocks (i.e., to the 59F-60A12-16 region).
Table 1.
Complementation analysis of the P[07623] stock
| Stock tested |
Cytological
location |
Number of trans-heterozygotes: total number
|
|
| P elements
|
| P[1753] |
60A |
39: 113
|
| P[06003] |
60A5-9 |
24: 95
|
| P[09201] |
60A8-11 |
27: 115
|
| P[942] |
60A8-11 |
12: 52
|
| P[01015] |
60A10-14 |
36: 105
|
| P[1390] |
60B1-2 |
32: 100
|
| P[04209] |
60B2-3 |
29: 116
|
| P[04405] |
60B2-4 |
28: 88
|
| P[04201] |
60B3-4 |
44: 124
|
| P[03101] |
60B5-6 |
26: 76
|
| P[K13409] |
60B6-7 |
34: 126 |
| Aberrations
|
| Df(2R)egl2 |
59E to 60A1 |
36: 98 |
| Df(2R)bw-S46 |
59D8
to 60A7 |
27: 82 |
| Df(2R)or-BR11 |
59F6 to
60A8-16 |
0: 77 |
| Df(2R)G10-7-5 |
59F3 to
60A8-16 |
0: 57 |
| Df(2R)or-BR6 |
59D5 to 60B3-8 |
0: 109
|
| Df(2R)750 |
60B8 to 60D1-2 |
60: 144
|
| LS(2)lt[G16] |
60B8 to 60B10 |
28: 82
|
| T(Y;2)A160 |
60B to C |
21: 56 |
|
|
|
To implicate the insertion further as the cause of the lethality, we
used a genetic source of transposase to mobilize the P element in stock
[07623]. We recovered numerous independent revertants of the
white+ phenotype. The
white+ eye phenotype is the marker indicating
the presence of the transposon: the lethality associated with the
P[07623] stock was lost in 11 of 38 independent revertants of the
white marker. Molecular analysis of some of the viable
revertant lines by Southern blot analysis (Fig. 10) indicated a
complete removal of the insertion without large-scale disruption of
host sequences. This is evidence that the homozygous lethality of the
original P[07623] chromosome is attributable to the presence of the
insertion. Taken together with measurements of lowered PHM enzyme
levels (Fig. 11), the evidence indicates that a lethal phenotype is
obtained from mutation of the PHM gene.
dPHM protein expression
Staining of larval CNS with the affinity-purified antisera
indicated widespread expression of dPHM-like protein throughout all
levels of the CNS, as well as in other tissues, including endocrine
glands and gut (Fig. 12). Antibody specificity was
deduced by comparison with tissues that were stained with preimmune
serum. This expression was limited to a small number of CNS neurons
(approximately a few hundred) that displayed very high levels of
PHM-like immunoreactivity (Fig. 12a). Among stained neurons,
immunoreactivity was seen both in cell bodies and within neuropil
regions. The latter represents stained neuronal processes and also may
include glial staining. PHM antibody staining was also prevalent in
secretory cells of the Ring Gland (Fig. 12B),
salivary gland (not shown), and in diverse cells at all levels of the
midgut (Fig. 12C). In the CNS, several strongly stained
cells were identifiable as neuroendocrine neurons (Nassel et al., 1994 ;
Nassel, 1996 ) because they projected immunoreactive axons to defined
neurohemal organs like the Ring Gland (Fig. 12b) or the dorsal
neurohemal organs of the ventral ganglion. Many PHM-positive neurons
had positions similar to those of previously identified peptidergic
cells. We verified such identity in the case of several
dFMRFamide-expressing neurons using a Drosophila stock
containing a dFMRFamide- -galactosidase
construct called pWF3 (Schneider et al., 1993 ). As shown in Figure
13, the lacZ-positive SE2 interneurons of the
subesophageal neuromeres (A and B) and the
neuroendocrine Tv and Tva neurons of thoracic neuromeres (C and D) were among the strong PHM-staining neurons. Thus, in
the case of certain identified neurons, high levels of PHM expression correlate with a peptidergic neuronal phenotype.
Fig. 12.
Top. Whole-mount tissue staining using an
affinity-purified anti-PHM antibody in the CNS and in non-neural
tissues. A, The third instar larval CNS exhibits distributed
cell body and neuropilar staining. This view displays only a portion of the CNS; it is a ventral focal plane that includes the brain lobes and
the most rostral portions of the ventral ganglion.
Arrowheads mark stained cell bodies, and the
arrow indicates regions of stained neuropil. Note the
symmetry in both stained features. The low level of anti-PHM antibody
staining that was displayed by the majority of neurons at this stage
was very similar to the level of background staining observed with
preimmune serum. Br, Brain lobe; RG, Ring Gland.
B, High magnification view of the larval Ring Gland from
another specimen of comparable age to show inclusion of stained
endocrine cell bodies within the corpora cardiaca; asterisk
indicates stained axons and terminals of brain neurosecretory neurons
projecting within the RG. The cell bodies of the
immunoreactive brain neurons that project to the RG are not
visible in this panel. C, Image of a portion of the larval
midgut to indicate the amount and diversity of immunoreactive cells
that appear in the midgut epithelium. Arrowheads indicate
divergent immunoreactive cell morphologies. lumen, Midgut
lumen.
Fig. 13.
Bottom. Double-immunofluorescent staining
of the larval nervous system from the pWF3-y
FMRFamide- -gal reporter stock to analyze the identity of
PHM-positive neurons. The red channel displays anti-PHM
staining (A and C); the green channel
displays anti-lacZ staining, which is indicative of
dFMRFamide (B and D). The
inset displays a computer overlay of the images in
A and B. The interneuronal SE2 neurons
express FMRFamide-lacZ and are among a group of strong PHM-positive
cells (A and B; only one of the two
SE2 neurons in the CNS is seen in this focal plane). Some of
the strong PHM-positive neurons in the lateral thoracic neuromeres correspond to the Tv group of FMRFamide neurons:
Tv and Tva are identified neuroendocrine neurons
that both express PHM immunoreactivity (C and D).
np, Neuropil.
[View Larger Version of this Image (69K GIF file)]
DISCUSSION
The study of peptide amidation is fundamental to the
understanding of neuropeptide biosynthesis (Eipper et al., 1992 ). The current work extends our understanding of peptide amidation by initiating its analysis in a model genetic system,
Drosophila, where its roles and regulation in
vivo may be addressed directly. Previous studies have suggested
that neuropeptide processing in Drosophila is closely
related to that of vertebrates by virtue of finding genes encoding
related processing enzymes (Roebroek et al., 1991 ; Hayflick et al.,
1992 ; De Bie et al., 1995 ; Settle et al., 1995 ). Extracts of
Drosophila head contain both the mono-oxygenase and lyase
activities associated with peptide -amidation in vertebrates (Fig.
2). Like all vertebrate PHMs, the Drosophila PHM enzyme was
copper- and ascorbate-dependent and exhibited a micromolar Km for its peptidylglycine substrate. In
contrast to all species examined previously, however, Drosophila
PHM is not part of a bifunctional PAM gene. Our results
predict the presence of separate PHM and PAL
genes in Drosophila and argue for a fundamental difference between species in the organization and regulation of genes encoding these important neuropeptide biosynthetic enzymes. Previous biochemical work on insects is consistent with our present molecular data: Zabriskie et al. (1994) purified a monofunctional PHM enzyme that lacked PAL activity from honeybees. The separation of PHM
and PAL into distinct genes, as in Drosophila,
therefore may be broadly representative of many insect and perhaps
invertebrate species in general.
dPHM is homologous to the PHM portion of
mammalian PAM
The gene encoding rat PAM is large (>180 kb), contains at least
28 exons, and produces several alternatively spliced transcripts (Eipper et al., 1992 ; Ouafik et al., 1992 ; Hand et al., 1996). In the
rat, the major PAM transcripts encode bifunctional integral membrane proteins. Transcripts encoding monofunctional, soluble PHM
(e.g., PAM-4, Fig. 1) are generated only as quantitatively minor forms
and only when a poly(A) addition site downstream of exon 16 is used. In
such transcripts, the open reading frame is terminated after the end of
the PHM catalytic core. Although the genomic structures of the two
Xenopus laevis PAM genes have not been elucidated, the
monofunctional PHM transcript identified in that animal
appears generated by the use of an alternative poly(A) addition site
(Iwasaki et al., 1993 ). An additional level of diversity among
vertebrate PAM proteins results from post-translational cleavage of the
larger PAM precursor proteins: this process can yield soluble,
monofunctional PHM and PAL. Both PHM and PAL are active as part of the
bifunctional PAM protein, although the activity of monofunctional PHM
is higher when separated from the PAL domain (Husten et al., 1993 ).
dPHM is homologous to the PHM portion of
mammalian PAM and encodes a protein with authentic PHM
activity (Fig. 6). Drosophila and rat PHM exhibit ~41%
amino acid sequence identity over their catalytic cores (52%
similarity) (Fig. 5). This degree of identity is significantly greater
than the 29% sequence identity observed for rat PHM and rat
dopamine -mono-oxygenase over the same region (Wang et al., 1990 ).
Also, a bona fide Drosophila DBM homologue (tyramine hydroxylase, which catalyzes the conversion of tyramine to octopamine)
has been identified (Monastirioti et al., 1996 ), and shows only 23%
identity to dPHM. Finally, the exon/intron boundaries of
Drosophila and rat PHM are remarkably similar
(Fig. 8), suggesting that they have diverged from a common ancestral gene. From these combined data, we conclude that the dPHM
and rPAM genes are homologous.
In Drosophila separate genes encode PHM
and PAL
Although PAL enzyme activity is detectable in
Drosophila tissue extracts (Fig. 2), the protein that
exhibits this activity is not associated with dPHM, and we found no
evidence for a bifunctional PAM gene or PAM protein in
Drosophila. The sizes of the PHM RNAs and cDNAs
that we detected indicate that dPHM is not large enough to
include PAL sequences also. No PHM enzymatic activity (Fig. 2B) or immunoreactivity (Fig. 2C) was
associated with a protein large enough to include both PHM and PAL
enzymes. A final point of evidence concerning the putative relationship
between PHM and PAL gene sequences comes from
enzyme measurements in the PHM P element insertion stock:
PHM levels were decreased specifically, whereas PAL activity was
somewhat elevated. Therefore, we consider it likely that a separate
dPAL gene will be identified.
The individual catalytic units that form several other
multifunctional enzymes have been identified as separate gene products in divergent species. For example, the seven enzyme activities that
constitute the single-chain mammalian fatty acid synthase occur as two
nonidentical multifunctional enzymes in fungi and as seven individual
genes in bacteria (Amy et al., 1992 ). The PAM gene may have
undergone similar evolutionary modifications. The eighth
dPHM exon (Figs. 4, 8) encodes the final 55 of 365 amino
acids, including two of the eight conserved cysteine residues as well
as other residues known to be critical for mammalian PHM activity. The
eighth exon of dPHM corresponds to exon 14 of rat PAM, the final exon of the PHM catalytic core. Exon 15 of
the rat PAM gene is poorly conserved among species and forms
the type of flexible, protease-sensitive linker domain observed in
other multifunctional enzymes composed of independent catalytic units (Eipper et al., 1993 ). Exon 16 contains sequences encoding a paired basic cleavage site that allows post-translational separation of PHM
from PAL. The monofunctional dPHM gene does not contain exons equivalent to either rat exon 15 or 16 and thus does not correspond to the monofunctional PHM transcript generated by
alternative splicing of the bifunctional rat PAM gene.
There is differential PHM protein expression in the CNS
In the rat CNS, Rhodes et al. (1990) found widespread expression
of PAM-like immunoreactivity, with the highest levels in periventricular and supraoptic nuclei of the hypothalamus, in neocortex, and in sensory ganglia. They also found detectable levels in
several non-neuronal cell types, like Schwann cells, ependyma, and
oligodendroglia. These observations are in agreement with studies of
transcript localization in rat: PAM RNAs were especially
high in specific hypothalamic nuclei but were found in nearly all major
brain regions with the exception of the cerebellum (Schafer et al.,
1992 ). We began a cellular analysis of PHM protein expression in
Drosophila by studying the immunoreactive species detectable
in mature larval tissues. The strongly PHM-expressing neurons were a
minor subpopulation of the CNS. Based on morphological criteria, we
concluded that several of these strongly staining cells were
neuroendocrine. By their positions and patterns many appear identical
with previously identified peptidergic neurons (Nassel, 1996 ); we began
the process of relating identified peptidergic neurons to the pattern
of PHM neuronal expression by using a marker of dFMRFamide
gene expression (Fig. 13). These data support the hypothesis that, at
least for some neurons, the strong expression of PHM protein is
correlated with high levels of neuropeptide expression. The high degree
of cellular resolution possible in the simple nervous system of
Drosophila will permit a detailed examination of PHM protein
expression in identified neuronal cell types. A general and more
detailed description of the pattern of PHM immunolabeling at various
developmental stages will be presented in a future report. The present
results suggest differential and limited expression of the dPHM protein
among different neuronal classes in the mature larval CNS. This pattern
is broadly analogous to that found previously in the rat CNS.
A transposon inserted in the PHM gene allows a genetic
analysis of neuropeptide biosynthesis
To define the functions of the dPHM protein in vivo and
to analyze the contributions of amidation to the development and
physiology of the animal, we wish to identify and study animals
containing dPHM mutations. Several mutations affecting genes
critical for aminergic and cholinergic transmitter systems have been
recovered in Drosophila (for review, see Restifo and White,
1990 ). Feany and Quinn (1995) have described a P element that lies
within a gene, the sequence of which is similar to that of the
mammalian PACAP/GHRH family of neuropeptides and that fails to
complement the behavioral phenotype of the memory mutation,
amnesiac. Until this work, there was no information
regarding the genetics of Drosophila neuropeptide
biosynthesis.
The P[07623] insertion reveals a lethal phenotype that likely
is attributable to disruption of the dPHM gene. This
insertion represents a mutant allele of PHM, because PHM
enzyme levels are diminished specifically (Fig. 11). Significantly,
independent revertants of the insertion have lost the lethality that
previously was associated with that chromosome, suggesting that the
lethality of the P[07623] chromosome maps to the insertion. The
simplest explanation is that PHM gene function is curtailed
in this insertion background and that a critical function for this gene
is revealed. These observations raise several questions regarding dPHM
roles in vivo: when is dPHM first expressed and
how does its expression correlate with the death of the animals?
Further, can peptide amidation still take place, and what are the
cellular and molecular consequences of impairing >90% of the
neuropeptides deployed by the nervous system? Defining the roles of PHM
in vivo using genetic and molecular methods will continue to
provide important insights into the processes of neuropeptide
biosynthesis and also should shed light on the evolution of the
PHM/PAL genes.
FOOTNOTES
Received Aug. 15, 1996; revised Nov. 5, 1996; accepted Dec. 2, 1996.
This work was supported by grants from National Institutes of Health
(DK-32949 to B.A.E. and NS-21749 to P.H.T.) and by the McDonnell Center
for Cellular and Molecular Neurobiology (to P.H.T.). We thank Anneliese
Schaefer for performing the chromosome localization by in
situ hybridization described in this paper. We thank Mike Nonet
for help with fluoresence microscopy and Suzy Renn for help with
photography. We thank Alex Kolodkin and Mike Horner for advice with
PCR. We thank Phil Beachy and Erich Buchner for gifts of cDNA
libraries, Carl Thummel for sending P1 stocks, and Todd Laverty, Berkeley Drosophila Genome Project (BDGP), and the
Bloomington Stock Center for sending Drosophila stocks. We
thank Linda Hall for discussing unpublished information about the 60A
region. We are grateful to Mike Nonet and Ross Cagan for comments on a
draft of this manuscript. Also, we thank the members of our
laboratories for many helpful conversations and suggestions.
Correspondence should be addressed to Dr. Paul H. Taghert, Department
of Anatomy and Neurobiology, Box 8108, Washington University Medical
School, 660 South Euclid Avenue, St. Louis, MO
63110.
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