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The Journal of Neuroscience, October 15, 1998, 18(20):8300-8310
Three-Dimensional Structure and Composition of CA3 CA1 Axons in
Rat Hippocampal Slices: Implications for Presynaptic Connectivity and
Compartmentalization
Gordon M. G.
Shepherd1 and
Kristen M.
Harris2, 3
1 Department of Neurology, Massachusetts General
Hospital, Boston, Massachusetts 02114, 2 Program in
Neuroscience, Harvard Medical School, and 3 Division of
Neuroscience in the Department of Neurology, Children's Hospital,
Boston, Massachusetts 02115
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ABSTRACT |
Physiological studies of CA3 CA1 synaptic transmission and
plasticity have revealed both pre- and postsynaptic effects.
Understanding the extent to which individual presynaptic axonal boutons
could provide local compartments for control of synaptic efficacy and microconnectivity requires knowledge of their three-dimensional morphology and composition. In hippocampal slices, serial electron microscopy was used to examine a nearly homogeneous population of
CA3 CA1 axons in the middle of stratum radiatum of area CA1. The
locations of postsynaptic densities (PSDs), vesicles, and mitochondria
were determined along 75 axon segments (9.1 ± 2.0 µm in
length). Synapses, defined by the colocalization of PSDs and vesicles,
occurred on average at 2.7 µm intervals along the axons. Most
varicosities (68%) had one PSD, 19% had 2-4 PSDs, and 13% had none.
Synaptic vesicles occurred in 90% of the varicosities. One-half (53%)
of the varicosities lacked mitochondria, raising questions about their regulation of ATP and Ca2+,
and 8% of varicosities contained only mitochondria.
Eleven axons were reconstructed fully. The varicosities were
oblong and varied greatly in both length (1.1 ± 0.7 µm) and
volume (0.13 ± 0.14 µm3), whereas the
intervaricosity shafts were narrow, tubular, and similar in diameter
(0.17 ± 0.04 µm) but variable in length (1.4 ± 1.2 µm).
The narrow axonal shafts resemble dendritic spine necks and thus could
promote biochemical compartmentalization of individual axonal
varicosities. The findings raise the intriguing possibility of
localized differences in metabolism and connectivity among different
axons, varicosities, and synapses.
Key words:
CA3; CA1; pyramidal neuron; Schaffer collaterals; boutons en passant; axonal varicosities; presynaptic
terminal; postsynaptic density; synaptic vesicles; mitochondria; ultrastructure
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INTRODUCTION |
The cellular components underlying
the neural operations performed by the hippocampus during memory and
navigation tasks are becoming elucidated, but gaps remain in our
understanding of information flow in this system. The CA3 CA1
projection is significant both for its synaptic plasticity and for the
extent of convergence and divergence, which is greater than elsewhere
in the trisynaptic circuit (Andersen et al., 1971 ; Johnston and Amaral,
1997 ). The number of synapses made by a CA3 cell in area CA1 has been
inferred to be ~20,000 on the basis of light microscopic (LM)
counting of axonal varicosities (Andersen et al., 1994 ). Important
factors for CA3 CA1 connectivity are (1) the distribution and
composition of varicosities along the CA3 axons, (2) the extent and
pattern of axonal branching, and (3) the quantal contents and release probabilities of the synapses.
CA3 CA1 axons (comprising Schaffer collateral and commissural axons)
are morphologically heterogeneous. At the LM level, individual CA3 CA1 branches are thin unmyelinated axons with abundant
boutons en passant (Ishizuka et al., 1990 ; Sorra and Harris,
1993 ; Andersen et al., 1994 ; Li et al., 1994 ). Westrum and Blackstad
(1962) provided the first electron microscopic (EM) study of stratum
radiatum axons, including a 31-section serial analysis spanning ~1.5
µm with representative wax reconstructions. They described ovoid axonal varicosities separated by variable lengths of axonal shafts. Serial EM studies also have revealed numerous multiple-synapse boutons
(MSBs) and established that many of the CA3 axons could make multiple
synapses on a single CA1 cell (Sorra and Harris, 1993 ; Harris, 1995 ;
Woolley et al., 1996 ).
We sought to answer several fundamental questions about the
ultrastructure of CA3 CA1 axons. What is a varicosity? How are varicosities spaced along axons and how are synapses distributed among
them? Where are mitochondria located in relationship to synapses? What
are the dimensions of varicosities and their constituents? The answers
are essential for understanding the relationships between axonal
structures and cellular mechanisms of connectivity and plasticity.
These questions pertain not only to these axons but to corticostriatal
(Kincaid et al., 1998 ), nigrostriatal (Groves et al., 1994 ), Ia
afferent (Nicol and Walmsley, 1991 ; Pierce and Mendell, 1993 ), and
other varicosity-rich axons throughout the nervous system.
Reconstruction from serial EM was used to quantify the diversity in
components and dimensions of presumed CA3 CA1 axonal shafts and
varicosities. Stratum radiatum axons of area CA1 were studied, because
the vast majority are CA3 CA1 axons arising from ipsilateral Schaffer
collaterals and contralateral commissural axons (for review, see
Johnston and Amaral, 1997 ). CA3 CA1 axons were identified by the
presence of round clear vesicles at asymmetric synapses and were
distinguished readily from axons of interneurons, which have flattened
pleomorphic vesicles at symmetric synapses (Harris and Landis, 1986 ).
Our strategy was to analyze first a large group of CA3 CA1 axons by
inspection via serial EM and then a representative subset by detailed
three-dimensional reconstruction. The findings raise the intriguing
possibility of substantial differences in metabolism and connectivity
among different varicosities along a single axon and among neighboring
CA3 CA1 axons.
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MATERIALS AND METHODS |
Hippocampal slices. Slices were prepared by standard
procedures (Harris and Teyler, 1984 ; Jackson et al., 1993 ; Sorra and Harris, 1998 ). Two adult male Long-Evans hooded rats (65- and 66-d-old, 334 and 355 gm, respectively) were anesthetized deeply with
pentobarbital (80 mg/kg) and decapitated. The brains were removed, and
the hippocampi were dissected free. Four to six transverse 400 µm
slices were cut from the middle third of the hippocampi with a tissue
chopper (Stoelting, Wood Dale, IL) into ice-cold physiological saline
containing (in mm) 117 NaCl, 5.3 KCl, 26 NaHCO3, 1 NaH2PO4, 2.5 CaCl2,
1.3 MgSO4, and 10 glucose, equilibrated with 95%
O2/5% CO2, pH 7.4. Slices were
transferred to a slice chamber (Stoelting) and placed onto nets over
wells with physiological saline at the interface of humidified 95%
O2/5% CO2 at 32°C (Fig. 1A).

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Figure 1.
Location, orientation, and sectioning of CA1
stratum radiatum samples. The air and net
surfaces are labeled. A, A hippocampal slice, depicting
the Schaffer collateral of a CA3 pyramidal neuron projecting to the
apical dendrites of a pyramidal neuron in CA1 stratum radiatum. After
fixation, the slice was trimmed initially to leave just the central
part of area CA1 (bold outline). DG,
Dentate gyrus; Sub, subiculum. B, Higher
power view of the trimmed area of CA1, showing pyramidal neurons in
stratum pyramidale (SP) and their apical dendrites,
which are cross-sectioned in the middle third of stratum radiatum
(bold outline). C, Thick and thin
sections of the block face, spanning the entire thickness of the slice,
were examined to ascertain excellent tissue preservation and to
determine the optimal level for taking serial thin sections. Then a
right-angled trapezoid (bold outline) for serial thin
sectioning was created at that level by trimming away surrounding
tissue. D, On each serial thin section, micrographs were
taken of the same region (bold outline).
E, The resulting stack of serial micrographs totaled
107-109 images, with the dimensions indicated. F, The
triangulation method used to measure lengths of axons. The
points at which the axons exited the stack of images,
labeled A and E, and crossed the middle,
labeled C, were marked. On overlays, the distances in
the x-y plane between the exit points and the middle
point were measured (line segments AB and
CD). The z-axis differences between the
points (line segments BC and DE) were
calculated from the measured average section thickness and the number
of intervening sections. The sum of the calculated hypotenuses
(line segments AC and CE) gave the total
length of the axon segment.
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Physiological recordings were done to assure slice viability (Harris
and Teyler, 1984 ; Jackson et al., 1993 ; Sorra and Harris, 1998 ). Two
concentric bipolar stimulating electrodes were positioned 600-800 µm
apart in the middle of stratum radiatum on either side of a single
extracellular recording electrode. Slices were judged healthy if the
stimulus-response curves were sigmoidal and the half-maximal responses
remained stable for at least 1 hr before fixation.
Serial electron microscopy. After 1 hr of stable recording
of field EPSPs, the slice was fixed rapidly in 6% glutaraldehyde and
4% paraformaldehyde in 100 mm cacodylate buffer for 8 sec under
microwave irradiation (Jensen and Harris, 1989 ), stored overnight in
the fixative, and then rinsed in buffer. Each slice was trimmed
manually under a dissecting microscope to leave a block of tissue
containing area CA1, with the apical dendrites of the pyramidal cells
perpendicularly cut in the middle third of stratum radiatum (Fig.
1B). Slices were bathed with 1% osmium and 1.5%
potassium ferrocyanide in 100 mm cacodylate buffer, cooled in an ice
bath to <15°C, and microwaved (Pelco 3450 Laboratory Microwave
Processor, Ted Pella, Redding, CA) for 2.5 min at 37°C. After several
buffer rinses, they were bathed with 1% osmium in 100 mm cacodylate
buffer, cooled, and microwaved for 2.5 min at 37°C. Slices were
rinsed four to five times in buffer and twice in water; then they were
stained en bloc with 1% aqueous uranyl acetate while being
cooled on ice and were microwaved for 2.5 min at 37°C. Two brief
water rinses ensued. Samples were dehydrated in an acetone series (50, 70, 90, and 100%) for 40 sec each in the microwave at 37°C.
Infiltration began with acetone and 1:1 Epon/Spurr's resins for 1 hr
on a rotator at 37°C, followed by 2:1 acetone/Epon/Spurr's resins
overnight. After replacement with fresh 100% resin for several hours,
the samples were embedded in coffin molds, with the dendrites
orthogonal to the cutting plane. Samples were cured for 48 hr at
60°C.
The polymerized blocks were examined microscopically to select the
target area, located in the middle third of stratum radiatum in CA1
between strata pyramidale and lacunosum moleculare, in an area of CA1
midway between the CA2 and subicular regions. The blocks were trimmed
to this level with a Reichert UltraCut S Ultramicrotome, and then
several ~1 µm thick sections and ~60 nm thin sections were taken.
Thick sections were stained with 1% toluidine blue and were examined
by LM to ensure that dendrites were cross-sectioned and to guide
subsequent trimming to a trapezoidal area for serial sectioning. Thin
sections were mounted on Pioloform-coated (SPI Supplies, Westchester,
PA) slot grids (Synaptek, Ted Pella) and counterstained with saturated
ethanolic uranyl acetate, followed by Reynolds lead citrate, each for 5 min. Sections were examined with a JEOL 1200EX electron microscope
(JEOL, Peabody, MA) to choose an area midway between the air and net
surfaces of the hippocampal slice for subsequent serial thin sectioning
(Fig. 1C). This was a critical step, because the quality of
tissue preservation improved in a graded manner from the air and net
surfaces toward the middle. At an optimal depth, excellent tissue
preservation was judged by the relative absence of dark processes,
disrupted PSDs and microtubules, and swollen boutons and
mitochondria.
A diamond cutting tool was used to create a raised trapezoid (with
sides ~60 × 30 × 30 × 35 µm) encompassing this
area, right-angling one of its sides to enhance the cohesiveness of the
series ribbon (Fig. 1C). Serial sections were cut, mounted,
and counterstained as above (Fig. 1D). Grids were
placed in a grid cassette (Advance Microscopy Techniques, Danvers, MA),
stored in numbered gelatin capsules (Electron Microscopy Sciences, Fort
Washington, PA), and mounted in a rotating stage to obtain uniform
orientation of sections on adjacent grids. The series of sections was
photographed at 10,000× magnification (Fig.
1D,E). Calibration grids (Ernest Fullam, Latham, NY) were photographed with each series. A
cross-sectioned dendrite spanning all sections furnished a fiduciary
reference for maintaining a centered field of view. The two samples
yielded images of 107 (series LMTN) and 109 (series ZNQB) consecutive serial sections. Section thickness (ST) averaged 64 nm in LMTN and 50 nm in ZNQB, as determined by measuring the diameters
(d) of tubular or spherical objects (mostly mitochondria and
axons) in the micrographs (x-y plane) and counting the
number of sections (n) that they spanned
(z-axis); ST = d/n.
Terminology. The following nomenclature was used to describe
axonal structures. Axon: Entire structure containing axonal
shafts and varicosities. Axon segments: The short (~10
µm) lengths of axons within the serial EM image stacks. Axonal
shafts: Relatively straight, tubular, narrow-diameter portions of
the axon, containing one to several microtubules and occasional small
membranous organelles. Axonal varicosities: Any swelling of
the axon exceeding the typical variation in diameter of the adjacent
axonal shafts by more than ~50%. The presence, but not the absence,
of PSDs, vesicles, or mitochondria was used as supportive evidence to
identify varicosities. Synaptic bouton: A varicosity with
synaptic vesicles and one or more PSDs. A single-synapse
bouton (SSB) is associated with one PSD, and a
multiple-synapse bouton (MSB) is associated with two or more
PSDs. Postsynaptic density (PSD): Osmiophilic sites on dendritic spines or shafts, closely apposed to the synaptic bouton.
Inspective analysis. A large set of axons was analyzed by
visual inspection, recording the presence or absence of components and
the lengths of the axon segments through serial sections. On a section
in the middle of the stack (section number 55), the centrally situated
axons were identified and labeled for analysis. Axons were examined
along their lengths within the stack of serial images. For each axon
segment the number of varicosities was counted, noting for each
varicosity whether it was a "complete" varicosity flanked on both
sides by axonal shafts or a "partial" varicosity crossing the
margin of the image stack. Each complete varicosity was scored for its
numbers of PSDs and mitochondria and the presence or absence of
vesicles.
Triangulation method for axon length measurement. Because
the axon segments followed fairly straight trajectories on the ~10 µm scale of the image stack, their lengths were measured by a simplified method (Fig. 1F). For each axon segment
the x-y positions of the upper and lower points of exit
from the image stack and the x-y position on a middle
section (section 55) were marked on a transparent overlay. On the
overlay the distances from the two exit points to the middle position
were measured. The number of sections spanned times the average section
thickness gave the z-axis distance between the points. By
calculating the lengths of the two hypotenuses connecting each exit
point with the middle position, the total axon segment length was
obtained as the sum of those two line segments. The degree to which
this method approximated the true distance was gauged by comparison to
the section-by-section measurements with digital reconstruction (see
below). Values obtained by the triangulation method were 99 ± 7%
(mean ± SD, n = 11) of the lengths measured by
reconstruction, validating the assumption of axonal straightness and
the use of this method for these axons.
Digital reconstructive analysis. Eleven of the 75 axons were
chosen for detailed three-dimensional reconstruction (eight from series
LMTN and three from series ZNQB). The selection was aimed at
demonstrating the varieties of varicosities and combinations of PSDs,
vesicles, and mitochondria; the dimensions of the components were
not used as selection criteria. Digitally scanned images of
the micrographs were aligned in two stages, using IGL Trace software
developed by John Fiala (Children's Hospital Image Graphics Laboratory, Boston, MA). After gross registration of the entire stack
of full-field images, subfields with the areas of interest were finely
aligned to create a stack of images for each axon. Alignments performed
in this manner were precise and efficient, and no images were lost
because of poor alignment. Contours of individual axonal shafts,
varicosities, PSDs, and mitochondria were traced digitally, and vesicle
positions were marked. Lengths of axon segments, shafts, and
varicosities were measured directly by summing the line segments
between numerous points along the middle of axons throughout their
length. The volumes, areas, and total numbers of structures were
computed. Contours were displayed three-dimensionally (3D Studio Max 2, Kinetix, San Francisco, CA) without moving, editing, or otherwise
altering any data points. Axons, PSDs, vesicles, and mitochondria were
rendered with smooth surfaces that were textured and colored to make
them more distinguishable.
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RESULTS |
Inspective three-dimensional analysis of axons via serial EM
The ultrastructural features of axonal shafts and varicosities in
stratum radiatum (Fig. 2) were as
previously described (Westrum and Blackstad, 1962 ; Harris and Stevens,
1989 ; Sorra and Harris, 1993 ). To quantify the three-dimensional
characteristics of CA3 CA1 axons, we first inspected a large number
of axons for the presence or absence of features, because this is much
faster than detailed three-dimensional reconstruction.

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Figure 2.
Ultrastructural features of CA3 varicosities and
axons in stratum radiatum of area CA1. A, Synaptic
bouton synapsing with a dendritic spine. B, A dendrite
with two spines receiving input from two boutons, including one MSB.
The MSB contained a mitochondrion in nearby sections (data not shown).
C, Example of an MSB, with a presynaptic mitochondrion.
Inspection of adjacent sections revealed a third PSD. D,
Several boutons, including an MSB and SSB. The MSB, but not the SSB,
contained out-of-plane mitochondria. E, Longitudinally
sectioned axon with two boutons, neither of which had additional PSDs
or mitochondria in adjacent images. F, Longitudinally
sectioned axon. A mitochondrion occupied the right, but not the left,
bouton when it was examined three-dimensionally.
G, A varicosity occupied by a single mitochondrion but
not associated with PSDs or vesicles. Note that the images shown in the
subsequent figures are from different axons. den,
Dendritic shaft; mito, mitochondria; MSB,
multiple-synapse bouton; PSD, postsynaptic density,
filled triangles in B and
C; SSB, single-synapse bouton;
shaft, axonal shaft (arrows);
var, axonal varicosity; ves, vesicles.
Scale bar, 1.0 µm.
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Axon segments
Seventy-five axons were analyzed in serial sections (50 from set
LMTN and 25 from ZNQB). All but three (~2%) could be followed without difficulty until both ends coursed past the margins of the
image stack. The axons followed fairly straight paths, traveling in
diverse directions rather than in parallel or in fascicles. The average
length of axon segments determined by the triangulation method (see
Materials and Methods, Inspective Analysis) was 9.1 ± 2.0 µm
(mean ± SD), totaling 674 µm (Table
1). No definite axonal bifurcations or
terminations were seen in these short segments, in accord with previous
EM (Westrum and Blackstad, 1962 ) and LM observations (Ishizuka et al.,
1990 ; Sorra and Harris, 1993 ; Li et al., 1994 ).
Axonal varicosities
A total of 224 varicosities were identified. Because the total
axonal length was 674 µm, varicosities were on average
spaced every 3.0 µm along the axons (Table 1). However, the actual
spacing of varicosities in individual axon segments varied greatly,
with the individual axon segments bearing from zero to six
varicosities, with a mean of three. Thirty-five (16%) of the
varicosities were visualized only partially because they traversed the
image stack margins, and so their components were not analyzed further.
The remaining 189 fully visualized varicosities were examined for their
composition of PSDs, vesicles, and mitochondria.
PSDs
A total of 206 PSDs were identified (Table 1). The number of PSDs
per varicosity ranged from 0 to 4, with an average of 1.1 ± 0.7. The average number of PSDs per synaptic bouton (varicosity with 1
PSD) was 1.3 ± 0.5. Of the varicosities, 13% had no PSDs, 68%
were SSBs, and 19% were MSBs (Table 2).
The MSBs included 15% 2-PSD, ~3% 3-PSD, and <1% 4-PSD boutons. As
a percentage of all PSDs, 62% of the PSDs were on SSBs, and the
remaining 38% of PSDs occurred on MSBs, mostly in 2-PSD combinations.
Twenty (10%) of the PSDs were in spines with dark cytoplasm, at least some of which probably were caused by distal transection of dendrites during slice preparation.
Mitochondria
The 95 mitochondria found in these axons were distributed unevenly
among varicosities and axons (Tables 1, 2). Approximately one-half
(53%) of the varicosities (and 59% of the synaptic boutons) were
devoid of mitochondria, nearly one-half (44%) of the varicosities were
occupied by a single mitochondrion, and a small number contained two or
three mitochondria. In individual axon segments, mitochondria varied in
abundance from zero to four (Table 1), occupying as few as zero of four
to as many as four of four varicosities.
PSD-mitochondria combinations
Overall, there was one mitochondrion per two PSDs. Table 2
summarizes the distribution of PSDs and mitochondria in varicosities. Thirteen different combinations occurred. Most often, a varicosity had
no mitochondrion and a single PSD (43%) or had one mitochondrion associated with one PSD (24%).
Nonvesicular and non-PSD varicosities
Thirteen percent of the varicosities had no associated PSDs. Most
of these (11%) contained one or (rarely) two mitochondria, either with
(3%) or without (8%) vesicles. The remaining few 0-PSD varicosities
included three axonal swellings devoid of PSDs, vesicles, or
mitochondria. Most varicosities (90%) contained vesicles, and a few
(4%) contained vesicles without associated PSDs.
Comparison of data sets from two different slices
There were no statistically significant differences
(p > 0.5) between sets LMTN and ZNQB for the
main results, including axon segment length, varicosity number per
axon, and the varicosity spacing along axons. The varicosity subgroups
were also strikingly alike (LMTN vs ZNQB): 1-PSD, 68 versus 69%;
2-PSD, 15 versus 17%; 0-mitochondria, 53 versus 54%; 1-mitochondrion,
44 versus 42%; 1-PSD/0-mitochondrion, 42 versus 46%;
1-PSD/1-mitochondrion, 25 versus 22%. Therefore, the data were pooled
for the foregoing analyses.
Digital three-dimensional reconstructive analysis
Eleven axons were selected to demonstrate the range of
ultrastructural features among axonal shafts and varicosities and to measure the dimensions of axons and their components. The only selection criterion was that the set should include representative examples of the different features and combinations of components found
in the inspective analysis. This led to a slight over-representation of
MSBs and axons with below-average varicosity spacing, because we wanted
to show the range of axonal features rather than just the most
prevalent ones. However, the dimensions of axonal components were not used to select axons, permitting a quantitative analysis of
dimensions in this part of the study. The main results are shown in
Table 3, and the reconstructed images of
the axonal membrane contours and components are shown in Figures
3-5.

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Figure 3.
Left, Full-field view of a
representative micrograph from the stack of images used for
three-dimensional reconstructions. The shaft and two varicosities
(var) of an axon are indicated. Right,
Eight reconstructed axons from series LMTN, at the same scale as the
micrograph. Some axons extend beyond the area of the micrograph because
of the three-dimensional perspective. The axons travel in many
different directions, rather than parallel to each other. Scale bar,
1.0 µm.
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Axonal shafts
Shafts varied little in diameter but considerably in length (Table
3). The average diameter of 0.17 ± 0.04 µm was obtained by
measuring each shaft in several places on digitally scanned images of
the reconstructed axons (Fig. 4). Shaft
diameters were alternatively calculated to be 0.16 ± 0.04 µm by
assuming that the shafts were isodiametric tubes (a reasonable
assumption given the relationship shown in Fig. 6) and deriving
the diameter from the measured length and volume. The linearity of the
length-volume relationship (r = 0.78;
p < 0.0001; Fig. 6, filled circles)
indicates that the shaft diameters were indeed tubular and independent
of length.

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Figure 4.
The membrane contours for 11 reconstructed axon
segments, labeled A-K, including eight from series LMTN
and three from ZNQB. Axon segments were rotated from their various
native positions, as seen in Figure 3, into uniform orientation.
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Axonal varicosities
Most of the reconstructed varicosities appeared oblong and
tubular, although the smallest were more spherical (Figs. 4,
5). Consistent with this, the
length-volume relationship for varicosities was also linear (Fig.
6, open circles). Direct
measurement gave an average varicosity diameter of 0.40 ± 0.13 µm. By comparison, the calculated diameter derived from length and
volume was 0.33 ± 0.10 µm. The smaller value agrees with the
observation that, although varicosities are more tubular than
spherical, they are also oblong and irregular. The varicosities
constituted 44% of the total length of the axon segments and 80% of
the total volume. Varicosities tended to arise eccentrically from the
axonal shafts, which often were aligned along a common axis, as if
microtubules ran straight throughout the entire structure.

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Figure 5.
The PSDs (red), vesicles, and
mitochondria (speckled, light blue) for
the same set of 11 reconstructed axon segments that are shown in Figure
4. When they are photocopied, PSDs appear relatively smooth and black,
whereas mitochondria are speckled and lighter.
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Figure 6.
Graph of measured lengths versus volumes for
axonal shafts (filled circles) and varicosities
(open circles). The dotted line
represents the theoretical length-volume relationship for spherical
varicosities; i.e., volume = (4/3) r3, where r = (varicosity length)/2. Both shafts and varicosities are essentially
tubular.
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Organelles
PSD areas and the number of vesicles per bouton varied widely
(Table 3) but were closely correlated (r = 0.96;
p < 0.0001), consistent with previous observations
(Harris and Stevens, 1988 , 1989 ; Pierce and Mendell, 1993 ; Harris and
Sultan, 1995 ). Varicosity volumes also correlated well with both PSD
area (r = 0.88; p < 0.0001) and
vesicle number (r = 0.86; p < 0.0001).
Mitochondrial volumes also scaled with varicosity size
(r = 0.80; p < 0.0001), vesicle number
(r = 0.74; p < 0.005), and PSD area
(r = 0.74; p < 0.01).
The extra or "obligatory" cytoplasmic volume (Sasaki-Sherrington et
al., 1984 ) around vesicles or mitochondria was assessed in varicosities
containing either vesicles or mitochondria. Total vesicle
volume was estimated from the total vesicle number and an assumed 28 pl
per vesicle (Harris and Sultan, 1995 ). Vesicles had a 25-fold
obligatory volume, whereas that of mitochondria was 2.4-fold,
comparable to mitochondria in dendritic varicosities of amacrine cells
(Sasaki-Sherrington et al., 1984 ). The higher value for vesicles may
reflect vesicle-associated proteins and the presence of smooth
endoplasmic reticulum. Complete analysis of obligatory volumes would
entail the measurement of microtubule and smooth endoplasmic reticulum
dimensions, beyond the scope of this study.
Spacing of PSDs and mitochondria
Edge-to-edge distances between adjacent PSDs were measured,
recognizing that the sample was small and intentionally skewed to
include relatively many varicosities and MSBs per axon. The average
distance was 1.91 ± 1.27 µm (n = 31; range,
0.26-4.83 µm). PSDs sharing the same varicosity were typically
hundreds of nanometers apart (0.74 ± 0.41 µm; range, 0.26-1.54
µm; n = 8) but could be as close to PSDs on another
varicosity as to each other. The average distance between PSDs on SSBs
was higher (2.32 ± 1.21 µm; range, 0.56-4.83 µm;
n = 23).
The edge-to-edge distance between mitochondria was 2.35 ± 1.83 µm (n = 7). When the distances between mitochondria
and the ends of axons also were included (i.e., mitochondria were
assumed to lie just beyond the stack margins), the value was 3.33 ± 2.39 µm (n = 28; range, 0.60-9.83 µm).
The edge-to-edge distances between PSDs and mitochondria were 0.88 ± 0.74 µm (n = 27; range, 0.18-3.01 µm),
consistent with an inter-PSD distance of ~2 µm and a 2:1
PSD-to-mitochondria ratio. Higher values were obtained if ambiguously
situated PSDs (closer to the end of the axon segment than to a
mitochondrion) were included. This was done by using two extreme
interpretations of their PSD-to-mitochondrion distances, either as
equivalent to the PSD-to-end distance (1.04 ± 0.89 µm; maximum,
3.66 µm; n = 42) or to the distance to the nearest
observed mitochondrion (2.10 ± 2.08 µm; maximum, 7.30 µm).
Thus, mitochondria and PSDs were 1-1.5 µm apart on average, but
distances of 4 µm or more were possible.
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DISCUSSION |
In analyzing the three-dimensional structure of CA3 CA1
axonal shafts and varicosities, we have confirmed and extended
the descriptions of Westrum and Blackstad (1962) . These axons are complex. Neither varicosities nor synapses were spaced uniformly along
the axons. Individual varicosities were associated with 0-4 PSDs,
indicating that connectivity can be quite variable even at this level.
The dimensions of axonal varicosities and shafts suggest that they
could form a series of biochemical compartments. Vesicle numbers varied
several hundred-fold. Mitochondria were distributed unevenly among
varicosities. A surprising finding was that >50% of varicosities
lacked mitochondria.
Possible artifacts
Shrinkage
Measurements made in fixed and dehydrated tissue are subject to
uncertainties regarding tissue shrinkage and distortion. Here, measurements are presented without correction for shrinkage,
because the magnitude of the effect is unknown and may vary for
different preparations and in different tissue planes (Harris, 1994 ;
Trommald et al., 1995 ). We did, however, calculate the possible impact of 10-25% shrinkage. The frequencies and ratios of varicosity components would not be affected by shrinkage. Measurements of length,
area, and volume would be increased proportionally. The only subsequent
value that depended on any of these measurements was the estimate of
synaptic spacing, the significance of which is discussed below.
Identification
Varicosities were broadly defined both by their dimensions and
components. Most were easily discerned by their shape alone, and, in
addition, >98% had PSDs, vesicles, or mitochondria. Tiny synaptic
boutons, which might have been mistaken for axonal shafts by LM, were
detected by the presence of at least one vesicle and a PSD.
Slice preparation
The widespread experimental use of hippocampal slices makes the
present analysis especially pertinent. A significant potential difference between healthy slices and perfusion-fixed hippocampus is
that slices can have more synapses, which occur on existing synaptic
boutons and result in more MSBs (Sorra et al., 1995 ; Sorra,
1996 ) (see also Woolley et al., 1996 ). Thus, the intervaricosity spacing is unlikely to be altered in slices, but the synaptic spacing
might be closer than in perfusion-fixed brain. In an earlier three-dimensional study of seven presynaptic boutons from
perfusion-fixed hippocampi (Harris and Sultan, 1995 ), three had no
mitochondria. Thus, the absence of mitochondria from approximately
one-half of the synaptic boutons is not unique to the slice
preparation.
Implications for synaptic connectivity
Determining synaptic spacing along CA3 axons is essential for
understanding CA3 CA1 connectivity. Previously, synaptic spacing has
been inferred from intervaricosity spacing. Andersen (1975) described
an intervaricosity distance of 3-5 µm in an early serial EM
analysis. Subsequent estimates have relied on counting varicosities by
LM and assuming each to have 1-1.5 synapses, yielding intersynaptic spacings of 7 µm (Ishizuka et al., 1990 ), 4.3-6.0 µm (assuming 0-40% shrinkage; Sik et al., 1993 ), 4.4 µm (Li et al., 1994 ), and
from 3.6 ± 0.6 to 4.5 ± 0.8 µm (Andersen et al., 1994 ).
Here, the intervaricosity spacing averaged 3.0 µm, and the
intersynaptic spacing, based on the observed PSD frequency, was
calculated as 2.7 µm. Allowance for up to 25% possible shrinkage
would increase the intersynaptic distance to 3.4 µm. The closer
spacing detected by serial EM likely results from synapses being
discerned on narrow varicosities that would have eluded detection by
LM. The total number of synapses made by a single CA3 axon in the
ipsilateral area CA1 can be extrapolated by multiplying synaptic
spacing by the total axonal length (Andersen et al., 1994 ; Li et al.,
1994 ), giving 20,000-30,000 total synapses.
This value is a good working estimate for CA3 CA1 divergence in
connectivity. It belies, however, the extreme heterogeneity in synaptic
spacing and fails to capture the likely convergence in connectivity
between many pairs of CA3 and CA1 cells (Harris, 1995 ). The
edge-to-edge spacing of PSDs varied >20-fold (ranging from 0.3 to >7
µm). A large fraction of the PSDs (~40%) occurred together in
groups of two to four on individual boutons (MSBs). Synapses on MSBs
are known to arise from the same or different CA1 pyramidal cells
(Sorra and Harris, 1993 ). Thus, it will be fruitful to explore
convergence in CA3 CA1 connectivity at the level of identified cell
pairs.
Biophysical implications
The three-dimensional data on varicosity-rich CA3 axons will be
ideally suited for biophysical modeling of electrical and diffusion
properties once the quantities and distributions of ion channels,
pumps, buffers, and other molecules are known. Models of action
potential propagation along other varicosity-rich axons exhibit
frequent conduction blocks and branch-point failures (Lüscher and
Shiner, 1990 ), which render downstream boutons functionally silent.
Determining whether the size and spacing of CA3 axonal varicosities are
sufficient to cause conduction blocks will have important functional
importance for CA3 CA1 connectivity. The structural variation in the
CA3 axons also has significant consequences for diffusion properties.
By analogy with dendritic spine necks, axonal shafts could serve to
isolate axonal varicosities biochemically (Harris and Stevens, 1989 ;
Koch and Zador, 1993 ; Zador and Koch, 1994 ; Shepherd, 1996 ).
Furthermore, diffusion within a varicosity could be nonuniform because
varicosities are oblong or tubular and often irregularly shaped. Thus,
in addition to the compartmentalization afforded by the narrow axonal
shafts, there may be subcompartments within varicosities, which could
be of particular importance for synaptic specificity at MSBs.
Mitochondria and synaptic metabolism
Mitochondria in axons were distributed unevenly, as they were
elsewhere in the CA1 neuropil (Nafstad and Blackstad, 1966 ). Indeed,
mitochondria occurred in <50% of synaptic boutons. This finding
raises several questions regarding energy use and calcium regulation,
especially during synaptic activation.
ATP provides the energy to maintain the resting potential and fuels
synaptic vesicle cycling (Südhof, 1995 ). How do varicosities without mitochondria obtain ATP? One source of ATP is through diffusion
along the axon from mitochondria in other varicosities. If diffusion is
fast, then the ATP concentration will be sustained; if slow, it will
diminish with distance from mitochondria. Even if diffusion is normally
fast, states of high demand, such as epileptic activity and anoxia,
might deplete ATP at critical distances from mitochondria. Alternative
sources of ATP might include glycolysis or active transport from
neighboring axons, dendrites, or glia (Magistretti and Pellerin, 1996 ;
Wu et al., 1997 ).
Mitochondrial enzymes are highest in brain regions with high activity
(Wong-Riley, 1989 ; Snodderly and Gur, 1995 ; Magistretti and Pellerin,
1996 ). Mitochondrial volume and oxidative activity are greater in the
more active tonic than in the less active phasic crayfish motor neurons
(Nguyen et al., 1997 ). Moreover, stimulating the phasic axons increases
their mitochondrial oxidative competence (Nguyen and Atwood, 1994 ). Do
mitochondria in CA3 CA1 axons also change with the level of
presynaptic activity, consistent with the correlations between
mitochondria and varicosity size, vesicle content and PSD number?
Do mitochondria travel to sites of high metabolic demand along CA3
axons, as occurs in other axons and intracellular compartments (Fawcett, 1981 ; Morris and Hollenbeck, 1993 )? Eight percent of the CA3
axonal mitochondria were solitary. Perhaps these were undergoing
transport. In cultured hippocampal neurons, 20% of the axonal
mitochondria are motile, although they frequently stop and change
direction (Overly et al., 1996 ). If CA3 axonal mitochondria move at
typical rates of 0.4 µm/sec (Vale et al., 1985 ), then they could
reach nonmitochondrial synapses on a time scale of seconds.
Mitochondria also regulate presynaptic Ca2+ (Alnaes
and Rahamimoff, 1975 ). They sequester Ca2+ on a
relatively slow time scale as compared with synaptic firing (Wang and
Thayer, 1996 ). Without mitochondria, synapses might incur greater
fluctuations in Ca2+ and be more prone to
Ca2+-mediated toxicity. Presynaptic mitochondria
have been implicated as a basis for post-tetanic potentiation (PTP) at
the crayfish neuromuscular junction, sequestering Ca2+
during tetanic stimulation and releasing them in the post-tetanic phase
(Tang and Zucker, 1997 ). If this also occurs at CA3 CA1 synapses, it
raises the intriguing possibility that only ~50% of the presynaptic
boutons will exhibit PTP. Knowing the dynamics of mitochondria in
CA3 CA1 axons will be important for understanding whether their
nonuniform distribution is a reliable marker of synaptic activity and
plasticity.
 |
FOOTNOTES |
Received June 12, 1998; revised July 28, 1998; accepted July 30, 1998.
This work was supported by National Institutes of Health Grants NS21184
and MH/DA57351, with the latter funded jointly by the National
Institute of Mental Health, National Institute on Drug Abuse, and NASA
(K.M.H.); and by the Mental Retardation Research Center Grant
P30-HD18655 (Dr. Joseph Volpe, Principal Investigator). We thank
Sergei Kirov for preparing the hippocampal slices, Marcia Feinberg for
expert serial EM technical assistance, John Fiala for creation of the
IGL Trace reconstruction system, and John Fiala and Karin Sorra for
helpful comments on this paper.
Correspondence should be addressed to Kristen M. Harris, Ph.D.,
Department of Neurology, Children's Hospital, Enders 208, 300 Longwood
Avenue, Boston, MA 02115.
 |
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