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The Journal of Neuroscience, April 1, 1998, 18(7):2449-2457

Subunit Composition and Quantitative Importance of Hetero-oligomeric Receptors: GABAA Receptors Containing alpha 6 Subunits

Martin Jechlinger, Robert Pelz, Verena Tretter, Thomas Klausberger, and Werner Sieghart

Section of Biochemical Psychiatry, University Clinic for Psychiatry, A-1090 Vienna, Austria

    ABSTRACT
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References

In cerebellum, GABAA receptors containing alpha 6 subunits are expressed exclusively in granule cells. The number of alpha 6 receptor subtypes formed in these cells and their subunit composition presently are not known. Immunoaffinity chromatography on alpha 6 subunit-specific antibodies indicated that 45% of GABAA receptors in cerebellar extracts contained alpha 6 subunits. Western blot analysis demonstrated that alpha 1, beta 1, beta 2, beta 3, gamma 2, and delta  subunits co-purified with alpha 6 subunits, suggesting the existence of multiple alpha 6 receptor subtypes. These subtypes were identified using a new method based on the one-by-one immunochromatographic elimination of receptors containing the co-purifying subunits in parallel or subsequent experiments. By quantification and Western blot analysis of alpha 6 receptors remaining in the extract, the proportion of alpha 6 receptors containing the eliminated subunit could be calculated and the subunit composition of the remaining receptors could be determined. Results obtained indicated that alpha 6 receptors in cerebellum are composed predominantly of alpha 6beta xgamma 2 (32%), alpha 1alpha 6beta xgamma 2 (37%), alpha 6beta xdelta (14%), or alpha 1alpha 6beta xdelta (15%) subunits. Other experiments indicated that 10%, 51%, or 21% of alpha 6 receptors contained homogeneous beta 1, beta 2, or beta 3 subunits, respectively, whereas two different beta  subunits were present in 18% of all alpha 6 receptors. The method presented can be used to resolve the total number, subunit composition, and abundancy of GABAA receptor subtypes in the brain and can also be applied to the investigation of other hetero-oligomeric receptors.

Key words: GABAA receptor; composition, alpha 6 subunit; granule cell; cerebellum; antibodies; immunoaffinity chromatography; immunoprecipitation; [3H]muscimol; [3H]Ro 15-4513; binding studies

    INTRODUCTION
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References

GABAA receptors are ligand-gated chloride ion channels and the site of action of various pharmacologically and clinically important drugs, such as benzodiazepines, barbiturates, steroids, anesthetics, and convulsants (Sieghart, 1995). So far six alpha , four beta , three gamma , one delta , one epsilon , and three rho  subunits have been cloned and sequenced from mammalian brain (Sieghart, 1995; Ogurusu and Shingai, 1996; Davies et al., 1997), and it is assumed that five subunits assemble to form functional GABAA receptors (Nayeem et al., 1994; Tretter et al., 1997). Expression studies have indicated that alpha , beta , and gamma  subunits have to combine to form receptors closely resembling native receptors. Depending on the type of alpha , beta , and gamma  subunits used for transfection of cells, however, recombinant receptors with different pharmacological properties do arise (Sieghart, 1995). The distinct but overlapping regional and cellular expression of the individual subunits (Persohn et al., 1992; Wisden et al., 1992) raises the possibility of the existence of an extremely large variety of GABAA receptor subtypes in the brain. So far the actual extent of GABAA receptor heterogeneity is not known.

GABAA receptors containing alpha 6 subunits are expressed in cerebellar granule cells and in the embryologically related granule cells of the cochlear nucleus only (Laurie et al., 1992; Persohn et al., 1992; Wisden et al., 1992; Varecka et al., 1994; Jones et al., 1997). Thus, all alpha 6 receptors from cerebellum are expressed in the same cell type. In addition, receptors consisting of alpha 6beta xgamma 2 subunits have special properties because they exhibit a high affinity for the inverse benzodiazepine agonist Ro 15-4513 but no affinity for the benzodiazepine agonist diazepam (Sieghart, 1995).

Several studies have investigated the subunit composition of GABAA receptors containing alpha 6 subunits. The results obtained, however, were partially conflicting. Whereas in one study (Quirk et al., 1994) alpha 6 subunits were not observed to occur in combination with other alpha  subunits, other studies demonstrated a partial coexistence of alpha 6 and alpha 1 subunits in the same receptor (Pollard et al., 1993, 1995; Khan et al., 1994, 1996). Similarly, estimates of the abundancy of individual receptor subtypes differed between authors. Finally, because of the lack of suitable antibodies, not all alpha 6 subunit-containing receptors could be investigated.

The present study was performed to resolve these discrepancies. Using 13 highly specific antibodies directed against different GABAA receptor subunits, we demonstrated that only alpha 1, beta 1, beta 2, beta 3, gamma 2, and delta  subunits significantly co-purified with alpha 6 subunits. To determine the identity and quantitative importance of receptors formed from these subunits, a generally applicable method was developed that is based on a one-by-one elimination by immunoaffinity chromatography of receptors containing the co-purifying subunits. Quantification of the remaining alpha 6 receptors allowed us to estimate the proportion of alpha 6 receptors containing the eliminated subunit. Repeating this subtractive purification by eliminating another co-purifying subunit in a parallel or a subsequent experiment finally allowed us to identify the subunit composition of alpha 6 receptors and to determine their quantitative importance.

    MATERIALS AND METHODS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References

Generation and purification of antibodies. The antibodies anti-peptide alpha 1(1-9), anti-peptide alpha 2(416-424), and anti-peptide alpha 3(459-467) (Zezula et al., 1991), anti-peptide alpha 4(379-421) (Ebert et al., 1996), anti-peptide alpha 5(427-433) (Sieghart et al., 1993), anti-peptide beta 3(345-408) (Slany et al., 1995), anti-peptide beta 3(1-13), and anti-peptide gamma 2(319-366) (Tretter et al., 1997), anti-peptide gamma 1(324-366) (Mossier et al., 1994), anti-peptide gamma 3(322-372) (Tögel et al., 1994), and anti-peptide delta (1-44) (Jones et al., 1997) were generated and affinity-purified as described previously. Polyclonal anti-peptide beta 1(350-404) and anti-peptide beta 2(351-405) antibodies were generated in a way similar to that described (Mossier et al., 1994).

The N-terminal peptide alpha 6(1-15) (sequence QLEDEGNFYSENVSR-) or the C-terminal peptide alpha 6(429-434) (sequence -VSSTVE) were custom-synthesized with an additional C- or N-terminal cysteine, respectively (piChem, Graz, Austria) and were coupled to keyhole limpet hemocyanin. These adducts were then used for the immunization of rabbits. The antibodies were isolated from the sera of the immunized rabbits by affinity chromatography on thiopropyl-Sepharose 6B coupled to the cysteine residue of the respective peptide according to the recommendations of Pharmacia LKB Biotechnology.

Cloning of alpha 1, beta 1, beta 2, beta 3, or gamma 2 subunits of GABAA receptors. A rat brain cDNA library was constructed in lambda ZAP (Stratagene, La Jolla, CA) from poly A+ mRNA isolated from the brains of 8- to 10-d-old rats as described in the protocol from Stratagene. alpha 1, beta 1, beta 2, beta 3, and gamma 2 subunits of GABAA receptors were cloned from this cDNA library (Fuchs et al., 1995; Slany et al., 1995), and their sequence proved to be identical to that of the respective sequence published previously.

Culture of human embryonic kidney (HEK) 293 cells and cDNA transfection. Transformed HEK 293 cells (CRL 1573; American Type Culture Collection, Rockville, MD) were grown in DMEM (Life Technologies, Grand Island, NY) supplemented with 10% fetal calf serum (JRH Biosciences, Lenexa, KS), 2 mM glutamine, 50 µM beta -mercaptoethanol, 100 U/ml penicillin G, and 100 µg/ml streptomycin in 75 cm2 petri dishes using standard cell culture techniques.

HEK 293 cells were transfected with rat alpha 1, beta 1, beta 2, beta 3, or gamma 2 subunit cDNAs subcloned individually into the expression vector pCDM8 (Invitrogen, San Diego, CA), using the calcium phosphate precipitation method (Chen and Okayama, 1988). The ratio for the alpha , beta , and gamma  subunits used for transfection of 3 × 106 cells was 12:6:6 µg cDNA (Zezula et al., 1996). The cells were harvested 48 hr after transfection.

Extraction of GABAA receptors. Membranes from the cerebellum of adult rats or membranes from HEK 293 cells transfected with various GABAA receptor subunit cDNAs were extracted with a deoxycholate buffer containing 0.5% deoxycholate, 0.05% phosphatidylcholine, 10 mM Tris-chloride, pH 8.5, 150 mM NaCl, 500 µM benzamidine, 200 µg/ml bacitracin, and 300 µM phenylmethylsulfonylfluoride (PMSF).

Immunoaffinity chromatography of GABAA receptors and Western blot analysis. The anti-peptide alpha 6(429-434) antibody was the first alpha 6 antibody available in our laboratory and therefore was used to prepare an immunoaffinity column. Immunoaffinity columns were prepared by coupling 3-5 mg of the purified antibodies to 1 ml of protein A-agarose using the ImmunoPure IgG Orientation Kit (Pierce Europe, Oud-Beijerland, The Netherlands) as described previously (Mossier et al., 1994).

The immunoaffinity columns were equilibrated in the deoxycholate extraction buffer. Deoxycholate extracts of cerebellar membranes were applied to the immunoaffinity column at a rate of 2 ml/h. To completely eliminate the respective subunit and its associated receptors from the extract, the extract was cycled three times through the respective immunoaffinity column. The column was washed twice with 4 ml of deoxycholate extraction buffer, twice with 4 ml of IP-high buffer (0.5% Triton X-100, 50 mM Tris-chloride, pH 8.3, 600 mM NaCl, 1 mM EDTA, 500 µM benzamidine, 200 µg/ml bacitracin, and 300 µM PMSF) and then twice with 4 ml of IP-low buffer (0.2% Triton X-100, 50 mM Tris-chloride, pH 8.3, 150 mM NaCl, 1 mM EDTA, 500 µM benzamidine, 200 µg/ml bacitracin, and 300 µM PMSF). Proteins bound to the column were eluted with a buffer containing 0.1 M glycine-HCl, pH 2.45, 150 mM NaCl, and 0.1% Triton X-100. The eluted proteins were precipitated with methanol/chloroform (Wessel and Flügge, 1984) and subjected to Western blot analysis (Fuchs and Sieghart, 1989). Proteins transferred to polyvinylidene difluoride (PVDF) membranes were detected with digoxigenated primary antibodies (Tögel et al., 1994), as indicated, and the anti-digoxigenin-alkaline phosphatase Fab fragments (Boehringer Mannheim, Mannheim, Germany) and the chemiluminescence substrate CSPD (Tropix, Bedford, MA) according to the instructions of the manufacturer.

Immunoprecipitation and receptor binding assay. For immunoprecipitation, 300 µl of the clear deoxycholate membrane extract were mixed with 30 µl of antibody solution (0-20 µg of antibody), and the mixture was incubated under gentle shaking at 4°C overnight. Then 50 µl of immunoprecipitin (Life Technologies, Gaithersburg, MD) plus 150 µl of an IP-low buffer containing 5% dry milk powder were added, and incubation was continued for 2 hr at 4°C. The precipitate was centrifuged for 10 min at 10,000 × g, and the pellet was washed twice with 500 µl IP-high and once with 500 µl IP-low buffer.

For [3H]Ro 15-4513 binding assays the precipitated receptors were suspended in 1 ml of a solution containing 0.1% Triton X-100, 50 mM Tris-citrate buffer, pH 7.1, 150 mM NaCl, and 10 or 20 nM [3H]Ro 15-4513 (20.9 Ci/mmol; DuPont NEN, Dreieich, Germany) in the absence or presence of 100 µM Ro 15-1788 or various concentrations of diazepam, and were incubated for 90 min at 4°C. For [3H]muscimol binding assays the precipitated receptors were suspended in 1 ml of a solution containing 0.1% Triton X-100, 50 mM Tris-citrate buffer, and 20 nM [3H]muscimol (17.1 Ci/mmol; DuPont NEN) in the absence or presence of 10 µM GABA, and were incubated for 60 min at 4°C (Zezula and Sieghart, 1991). The suspensions were then filtered through Whatman GF/B filters, and the filters were washed twice with 5 ml ([3H]Ro 15-4513 assay) or 3.5 ml ([3H]muscimol assay) of a 50 mM Tris-citrate buffer, pH 7.1. When the percentage of alpha 6 receptors retained by an immunoaffinity column had to be determined, immunoprecipitation with the alpha 6(1-15) antibody and the subsequent [3H]muscimol binding assays were performed in the same experiment with the original extract and the immunoaffinity column efflux.

Total [3H]Ro 15-4513 binding in the extract before or after immunoprecipitation of alpha 6 subunit-containing GABAA receptors was measured using a polyethyleneglycol (PEG) precipitation assay as described (Zezula and Sieghart, 1991). For this, 100 µl of the deoxycholate extract (or of the supernatant from the immunoprecipitation with anti-alpha 6 antibodies) was incubated for 90 min at 4°C in a total volume of 1 ml with a buffer containing 50 mM Tris-citrate, pH 7.1, 150 mM NaCl, 50 µg gamma -globulin, 15% (wt/vol) PEG, and 10 or 20 nM [3H]Ro 15-4513 in the absence or presence of 100 µM Ro 15-1788. The suspension was then filtered through Whatman GF/B filters, and the filters were washed twice with 3.5 ml of an 8% PEG solution.

For the determination of total [3H]muscimol binding in the extract, the PEG precipitation assay could not be used. This was attributable to the relatively high viscosity of the PEG solutions, prolonging the time needed for filtration of the samples, and the rapid dissociation of [3H]muscimol from its binding site. Total [3H]muscimol binding therefore was determined after all GABAA receptors present in the extract were precipitated with an antibody mixture containing 8 µg beta 1(350-404), plus 8 µg beta 2(351-407), plus 10 µg beta 3(1-13) antibody, using the same assay as described above. The validity of this approach was demonstrated by the observation that [3H]Ro 15-4513 binding data were identical whether receptors were precipitated with PEG or with this antibody mixture.

    RESULTS
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References

Anti-alpha 6 antibodies

The N- or C-terminal amino acid sequences alpha 6(1-15) or alpha 6(429-434) are unique for the alpha 6 subunit of GABAA receptors (Lüddens et al., 1990). Antibodies generated against these sequences were able to immunoprecipitate native GABAA receptors solubilized from rat cerebellar membranes in a dose-dependent manner (Fig. 1). Whereas anti-peptide alpha 6(1-15) antibodies precipitated up to 15 ± 4% (mean ± SD; n = 4) of all [3H]Ro 15-4513 binding sites present in the extract, anti-peptide alpha 6(429-434) antibodies precipitated only 5 ± 1% (mean ± SD; n = 4) of these sites. Of the [3H]Ro 15-4513 binding sites precipitated by these antibodies, 23 ± 2% were diazepam sensitive, whereas 77 ± 2% of these sites were diazepam insensitive.


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Figure 1.   Immunoprecipitation of GABAA receptors solubilized from rat cerebellum. Solubilized receptors (470 fmol of [3H]Ro 15-4513 binding sites) were incubated with increasing amounts of alpha 6(1-15) or alpha 6(429-434) antibodies in a final volume of 350 µl. Receptors present in the pellets (solid symbols) or the supernatant (open symbols) were determined by specific [3H]Ro 15-4513 binding. Identical results were obtained when the supernatant from the alpha 6(1-15) or alpha 6(429-434) immunoprecipitation was investigated. The values are mean ± SD of four separate experiments performed in triplicates. SD bars that were smaller than the diameter of the symbols are not shown.

Interestingly, however, it was demonstrated that in the same experiment the percentage of total [3H]Ro 15-4513 binding sites eliminated from the supernatant was higher than that actually found in the precipitate. Thus, whether 15-20 µg of alpha 6(1-15) or alpha 6(429-434) antibodies was used for immunoprecipitation, the amount of [3H]Ro 15-4513 binding sites in the supernatant was reduced by 30 ± 3% (mean ± SD; n = 4) (Fig. 1). These results seem to indicate that each of these antibodies had a similar ability to bind to alpha 6 subunit-containing GABAA receptors, but that part of the receptors presumably were lost during washing of the precipitate.

In other experiments the ability of alpha 6(1-15) antibodies to immunoprecipitate [3H]muscimol binding sites was investigated. As with [3H]Ro 15-4513 binding, the amount of [3H]muscimol binding sites retained in the pellet was smaller than that removed from the supernatant. Thus, alpha 6(1-15) antibodies precipitated 22 ± 3% (mean ± SD; n = 3) of all [3H]muscimol binding sites present in cerebellar extracts but eliminated 42 ± 3% of these binding sites from the supernatant. Overall, these data indicated that more [3H]muscimol than [3H]Ro 15-4513 binding sites were precipitated from cerebellar extracts (or removed from the supernatant) by alpha 6(1-15) antibodies.

Proteins precipitated from cerebellar extracts by alpha 6(1-15) antibodies were then subjected to SDS-PAGE and Western blot analysis. The alpha 6(429-434) antibody as well as two alpha 6(1-15) antibodies purified from the sera of different rabbits were able to identify a single protein band with an apparent molecular mass of 56-57 kDa (Fig. 2). The observation that three antibodies directed against two distinct epitopes of the alpha 6 subunit specifically identified the same protein supports the conclusion that the protein with apparent molecular mass of 56-57 kDa was the alpha 6 subunit of GABAA receptors. This conclusion is in agreement with previous reports indicating that the alpha 6 subunit exhibits an apparent molecular mass of 56-57 kDa (Lüddens et al., 1990; Pollard et al., 1993; Quirk et al., 1994). The different signal intensity of the antibodies reacting with identical amounts of the immunoprecipitate indicates that these antibodies exhibited a differential affinity for alpha 6 subunits under Western blot conditions.


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Figure 2.   Identification of alpha 6 subunits in cerebellar membrane extracts. GABAA receptors were immunoprecipitated from cerebellar membrane extracts using alpha 6(1-15) antibodies. Receptors were then subjected to SDS-PAGE and Western blot analysis, using digoxigenated antibodies. Lane 1, alpha 6(429-434) antibodies; lane 2, alpha 6(1-15) antibodies from rabbit 15; lane 3, alpha 6(1-15) antibodies from rabbit 16. Antibodies bound to proteins were detected using anti-digoxigenin-alkaline phosphatase Fab fragments and a sensitive chemiluminescence detection system as described in Materials and Methods. The gel was calibrated with proteins of known molecular mass. The experiment was performed twice with similar results. The protein smear below the 56-57 kDa band was detected by all three antibodies and may have represented differentially glycosylated, partially degraded, or alternatively spliced alpha 6 subunits.

Isolation, subunit composition, and quantitative importance of GABAA receptors containing alpha 6 subunits

After solubilization of GABAA receptors from cerebellar membranes, 67.8% of the [3H]Ro 15-4513 or [3H]muscimol binding sites present in the membranes could be recovered in the extract. This corresponded to 92.5% of the binding sites identified in the extract and in the 100,000 × g pellet after extraction. Because there was no significant difference in the efficiency of solubilization by detergent between [3H]muscimol binding sites or diazepam-sensitive or -insensitive [3H]Ro 15-4513 binding sites, it can be concluded that the extracted receptors were representative of the entire functional alpha 6 subunit-containing GABAA receptor population.

To quantitatively isolate GABAA receptors containing alpha 6 subunits, cerebellar extracts were cycled three times through an immunoaffinity column containing anti-peptide alpha 6(429-434) antibodies. In the final efflux of this column, anti-peptide alpha 6(1-15) antibodies no longer were able to precipitate GABAA receptors, and alpha 6 subunits no longer could be demonstrated in Western blots, indicating that this procedure eliminated most if not all alpha 6 receptors from the extract. In the same efflux, [3H]Ro 15-4513 binding was reduced by 31 ± 1% (mean ± SD; n = 3), and [3H]muscimol binding was reduced by 45 ± 1% (mean ± SD; n = 3). These percentages correspond closely to the 30 ± 3% reduction of [3H]Ro 15-4513 and 42 ± 3% reduction of [3H]muscimol binding sites observed in cerebellar extracts after immunoprecipitation with alpha 6(1-15) antibodies (see above).

To identify GABAA receptor subunits co-purifying with alpha 6 subunits, receptors bound to the alpha 6(429-434) immunoaffinity column were eluted by a change in the pH value of the buffer and were probed with 13 different antibodies, each of which specifically recognized a distinct GABAA receptor subunit. As shown in Figure 3A (or Fig. 4A), in addition to the alpha 6 subunit, alpha 1, beta 1, beta 2, beta 3, gamma 2, and delta  subunits were present in the alpha 6(429-434) column eluate. Thus, alpha 1(1-9), beta 1(350-404), beta 2(351-405), beta 3(345-408), gamma 2(319-366), and delta (1-44) antibodies identified proteins with apparent molecular mass of 51 kDa, 51-54 kDa, 50-53 kDa, 51-56 kDa, 41-44 kDa, and 53 kDa, respectively. Proteins with identical apparent molecular mass could be identified by these antibodies in parallel control experiments investigating recombinant GABAA receptors containing the respective subunits (experiments not shown). The beta 3(345-408) antibody, in addition to the 51-56 kDa protein, identified a second protein with an apparent molecular mass of 42-47 kDa. The protein with lower molecular mass seemed to be a partially degraded beta 3 subunit, because staining of this protein was variable in different experiments (compare Figs. 3 and 4), and increased with increasing time needed for the isolation of GABAA receptors (compare Fig. 3A-C).


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Figure 3.   Subunit composition and quantification of alpha 6 receptors before or after elimination of delta  or alpha 1 subunit-containing receptors. Cerebellar extracts were chromatographed on an alpha 6(429-434) immunoaffinity column either before (A) or after (B) chromatography on a delta (1-44) immunoaffinity column, or after (C) chromatography on both a delta (1-44) and an alpha 1(1-9) immunoaffinity column. alpha 6(429-434) column eluates were subjected to SDS-PAGE and Western blot analysis using the following digoxigenated antibodies: alpha 1(1-9), alpha 6(1-15), beta 1(350-404), beta 2(351-405), beta 3(345-408), gamma 2(319-366), and delta (1-44). Western blots are from a typical experiment that was performed three times with similar results. In parallel experiments, the original extract as well as the efflux from the delta (1-44) or the alpha 1(1-9) column were subjected to immunoprecipitation with alpha 6(1-15) antibodies and subsequent [3H]muscimol binding assays. Data are presented as percentage of [3H]muscimol binding sites precipitated in the original extract and are means of a single experiment performed in triplicate. The experiment was repeated three times with similar results.


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Figure 4.   Subunit composition and quantification of alpha 6 receptors before or after elimination of gamma 2 and alpha 1 subunit-containing GABAA receptors. Cerebellar extracts were chromatographed on an alpha 6(429-434) immunoaffinity column either before (A) or (B) after chromatography on a gamma 2(319-366) immunoaffinity column, or after (C) chromatography on both a gamma 2(319-366) and an alpha 1(1-9) immunoaffinity column. alpha 6(429-434) column eluates were subjected to SDS-PAGE and Western blot analysis using alpha 1, alpha 6, beta 1, beta 2, beta 3, gamma 2, and delta  antibodies as described in Figure 3. Western blots are from a typical experiment that was performed three times with similar results. In parallel experiments, the original extract as well as the efflux from the gamma 2(319-366) or the alpha 1(1-9) column were subjected to immunoprecipitation with alpha 6(1-15) antibodies and subsequent [3H]muscimol binding assays. Data are presented as percentage of [3H]muscimol binding sites precipitated in the original extract and are means of a single experiment performed in triplicate. The experiment was repeated three times with similar results.

The co-purification of alpha 1, beta 1, beta 2, beta 3, gamma 2, and delta  subunits together with alpha 6 subunits was not caused by a cross-reactivity of alpha 6(429-434) antibodies with these subunits, because neither alpha 6(429-434) nor alpha 6(1-15) antibodies were able to precipitate [3H]muscimol binding sites or GABAA receptor subunits from extracts of forebrain membranes, which do contain alpha 1-5, beta 1-3, gamma 1-3, and delta , but no alpha 6 subunits (Persohn et al., 1992; Wisden et al., 1992). These data therefore indicate that any one of the alpha 1, beta 1, beta 2, beta 3, gamma 2, and delta  subunits can be colocalized with alpha 6 subunits in the same GABAA receptor.

In contrast, the alpha 2, alpha 3, alpha 4, alpha 5, gamma 1, and gamma 3 subunits could not be detected in the eluate of the alpha 6(429-434) immunoaffinity column, although all of these subunits, except the alpha 3 and alpha 5 subunits, could be identified in cerebellar extracts by the respective antibodies (experiments not shown). This indicates that unspecific adsorption of receptors or an exchange of subunits during extraction was not a problem in this study.

Isolation, subunit composition, and quantitative importance of GABAA receptors containing alpha 6 and gamma 2 subunits

Because GABAA receptors are composed of five subunits, the co-purification of a total of seven different subunits by the alpha 6(429-434) immunoaffinity column indicated that a mixture of GABAA receptor subtypes with different subunit composition was purified. To isolate GABAA receptors containing alpha 6, beta x, and gamma 2 subunits, GABAA receptors containing any one of the other co-purifying subunits were quantitatively removed by immunoaffinity chromatography. In the first step, receptors containing delta  subunits were eliminated from cerebellar membrane extracts using a delta (1-44) column (Fig. 3). The delta (1-44) antibody specifically recognized the delta  but no other subunits of the GABAA receptor (Jones et al., 1997). Interestingly, in the pH 2.45 eluate of the delta (1-44) column, alpha 1, alpha 6, beta 1, beta 2, beta 3, delta , and other subunits, but no gamma 2 subunits, could be identified (R. Pelz, M. Jechlinger, and W. Sieghart, unpublished data).

To determine the composition of the remaining alpha 6 receptors, the efflux of the delta (1-44) column subsequently was chromatographed on the alpha 6(429-434) column. As shown in Figure 3B, delta  subunits could no longer be identified in the eluate of this column, indicating that these subunits had been completely eliminated by the delta (1-44) column. The presence of six different subunits (alpha 1, alpha 6, beta 1, beta 2, beta 3, gamma 2) in the eluate of the alpha 6(429-434) column indicates that GABAA receptors retained by this column were still heterogeneous.

In the efflux of the delta (1-44) column, alpha 6(1-15) antibodies were able to precipitate 70% of the [3H]muscimol binding sites that could be precipitated by these antibodies in the original extract (Fig. 3B). This indicates that 30% of the alpha 6 subunit-containing GABAA receptors were retained by the delta (1-44) column and contained the delta  subunit.

In the next step, the efflux of the delta (1-44) column was chromatographed on an alpha 1(1-9) immunoaffinity column. The alpha 1(1-9) antibody has been demonstrated to selectively identify only alpha 1 but no other GABAA receptor subunits (Nusser et al., 1996; Zezula et al., 1991). The alpha 6 subunit-containing receptors remaining in the efflux of the alpha 1(1-9) column were then collected by the alpha 6(429-434) column. In the pH 2.45 eluate of this column, only alpha 6, beta 1, beta 2, beta 3, and gamma 2 subunits, but no alpha 1 subunits, could be detected (Fig. 3C). The five subunits present in this eluate still could have been combined in a variety of different ways, resulting in a multiplicity of pentameric alpha beta or alpha beta gamma receptors with different subunit composition and stoichiometry. At this point, therefore, no conclusion on the identity and composition of the receptors isolated by this procedure could be made.

As expected, the intensity of the individual signals for alpha 6, beta 1, beta 2, beta 3, and gamma 2 subunits was lower in Figure 3C than in 3A or B. In the efflux of the alpha 1(1-9) column, 32 ± 3% (mean ± SD; n = 3) of the alpha 6 subunit-containing receptors present in the original extract could be precipitated by alpha 6(1-15) antibodies (Fig. 3C). Thus, 32% of alpha 6 receptors were composed of alpha 6, beta 1, beta 2, beta 3, and gamma 2 subunits. The observation that 70% of the alpha 6 receptors could be precipitated before and only 32% after the alpha 1(1-9) column additionally indicates that 38% of alpha 6 receptors were removed by the alpha 1(1-9) column and thus contained alpha 1 as well as alpha 6 subunits.

All of these percentages were obtained by investigating binding of [3H]muscimol to the precipitated receptors. Because [3H]muscimol binding sites can be demonstrated only on receptors containing alpha  and beta , or alpha , beta , and gamma  subunits (Zezula et al., 1996), these experiments indicate that the 32% of alpha 6 and 38% of alpha 1alpha 6 receptors so far discussed must also have contained beta  subunits. Whether all or only some of these receptors additionally contained gamma 2 subunits cannot be answered at this time.

Isolation, subunit composition, and quantitative importance of GABAA receptors containing alpha 6 and delta  subunits

In another experiment (Fig. 4), GABAA receptors containing gamma 2 subunits were eliminated from cerebellar membrane extracts using a gamma 2(319-366) column. The high specificity of this immunoaffinity column has been demonstrated previously (Mossier et al., 1994). In the pH 2.45 eluate of the gamma 2(319-366) column, alpha 1, alpha 6, beta 1, beta 2, beta 3, gamma 2, and other subunits, but no delta  subunits, could be identified (experiments not shown). This again supports the conclusion that gamma 2 and delta  subunits, at least in the cerebellum, seem not to be present in the same GABAA receptors.

Receptors remaining in the efflux of the gamma 2(319-366) column were then chromatographed on the alpha 6(429-434) column. In the eluate of this column, alpha 1, alpha 6, beta 1, beta 2, beta 3, and delta  subunits, but no gamma 2 subunits, could be detected (Fig. 4B). Immunoprecipitation with alpha 6(1-15) antibodies in the efflux of the gamma 2(319-366) column indicated that receptors composed of these subunits represented 30% of the alpha 6 receptors present in the original extract (Fig. 4B). All of these receptors contained the delta  subunit, because 30% of all alpha 6-containing GABAA receptors could also be bound to the delta (1-44) immunoaffinity column, as discussed above (Fig. 3B).

The identification of only 30% of the alpha 6 receptors in the efflux of the gamma 2(319-366) column indicates that 70% of these receptors were retained by this column and thus contained gamma 2 subunits. Combined with the above observation (Fig. 3B) that 70% of all alpha 6 receptors could be precipitated in the efflux of the delta (1-44) column and were composed of alpha 1, alpha 6, beta 1, beta 2, beta 3, and gamma 2 subunits, these data suggest that alpha 6 receptors contain either gamma 2 or delta  subunits.

In the next step, the efflux of the gamma 2(319-366) column was chromatographed on the alpha 1(1-9) column, and alpha 6 receptors remaining in the efflux of this column were then either collected by a subsequent alpha 6(429-434) immunoaffinity chromatography or precipitated by alpha 6(1-15) antibodies (Fig. 4C). In the eluate of the alpha 6(429-434) column, alpha 6, beta 1, beta 2, beta 3, and delta  subunits, but no alpha 1 subunits, could be identified. Immunoprecipitation experiments indicated that 15% of all alpha 6 subunit-containing GABAA receptors could still be precipitated in the efflux of the alpha 1(1-9) immunoaffinity column (Fig. 4C) and thus were composed of alpha 6beta xdelta subunits.

Because 30% of all alpha 6 (and delta ) subunit-containing receptors could be precipitated before and only about 15% after chromatography on the alpha 1(1-9) column, these results additionally indicate that 15% of all alpha 6 subunit-containing receptors are composed of alpha 1alpha 6beta xdelta subunits. Thus, the alpha 6 and delta  subunit-containing receptors alpha 1alpha 6beta xdelta and alpha 6beta xdelta obviously are present in cerebellum at a 1:1 ratio. As expected, the signal strength of the individual protein bands was reduced according to the receptors removed by the various immunoaffinity columns (compare Fig. 4A-C). In this experiment the staining of the beta 3 subunit was quite prominent. Because staining intensity depends on the individual properties of the digoxigenated antibody batch used, different staining intensities obtained with different antibodies do not necessarily reflect differences in the amount of protein present in the extract.

Results so far presented indicate the existence of at least four alpha 6 subunit-containing GABAA receptor subtypes in cerebellum that are composed of alpha 6beta xgamma 2, alpha 1alpha 6beta xgamma 2, alpha 6beta xdelta , and alpha 1alpha 6beta xdelta subunits. The same four alpha 6 receptor subtypes were also identified when the sequence of columns was changed, and an alpha 1(1-9) column was used before the gamma 2(319-366) column to eliminate receptors containing the respective subunits from cerebellar extracts. In addition, the quantitative data obtained were consistent with each other and not dependent on the sequence of columns used (experiments not shown). These results strongly suggest that none of the antibodies used for immunochromatography exhibited a significant cross-reactivity and that the alpha 6(1-15) or alpha 6(429-434) antibodies were able to recognize or precipitate these four alpha 6 subunit-containing GABAA receptor subtypes with comparable efficiency. The experiments described were repeated several times, and the average proportion of the four GABAA receptor subtypes calculated from the individual experiments is given in Table 1. In addition, taking into account that only 45 ± 1% of all GABAA receptors in the cerebellum contained the alpha 6 subunit, the absolute contribution of the various alpha 6 receptors to total GABAA receptors present in cerebellum was calculated (Table 1).

                              
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Table 1.   Relative and absolute abundancy of alpha 6 receptor subtypes in rat cerebellum

Isolation, subunit composition, and quantitative importance of GABAA receptors containing alpha 6 and distinct beta  subunits

The low number of alpha 6 receptors remaining in the extract after complete removal of gamma 2 and alpha 1 (alpha 6beta xdelta , 15% of all alpha 6 receptors) or of delta  and alpha 1 subunits (alpha 6beta xgamma 2, 32% of all alpha 6 receptors) prevented a direct investigation of the beta  subunit composition of these receptors, even more so because each immunoaffinity chromatography step is time consuming and enhances degradation and inactivation of receptors. Therefore, the beta  subunit-composition of alpha 6 receptors was investigated in the original extract from cerebellum only.

For this, cerebellum extracts were first chromatographed on a beta 1(350-404) immunoaffinity column (Fig. 5A). In the efflux of this column, beta 1 subunits no longer could be demonstrated (experiments not shown), indicating that receptors containing this subunit had been removed completely. Precipitation with alpha 6(1-15) antibodies indicated that 85 ± 1% (mean ± SD; n = 4) of the original alpha 6 receptors were still present after removal of the beta 1 subunit-containing receptors and suggested that 15% of all alpha 6 receptors contained beta 1 subunits (Fig. 5A).


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Figure 5.   Quantification of alpha 6 receptors containing different beta  subunits. [3H]muscimol binding to GABAA receptors immunoprecipitated with alpha 6(1-15) antibodies was determined in cerebellar membrane extracts before or after chromatography on a beta 1(350-404), beta 2(351-405), or beta 3(345-408) immunoaffinity column as indicated. Data are presented as percentage of [3H]muscimol binding sites precipitated by alpha 6(1-15) antibodies in the original extract and are mean values ± SD of three to four experiments performed in triplicate. The proportion of [3H]muscimol binding sites retained on the initial anti-beta immunoaffinity columns (A, C, E) was significantly different (Student's t test) from that remaining in the extract after the other two beta  subunits had been removed (efflux, B, D, F): A, efflux D (p = 0.007); C, efflux F (p = 0.002); E, efflux B (p = 0.001). [3H]muscimol binding sites present in the original extract were significantly different (p = 0.0001) from the sum of the [3H]muscimol binding sites retained on the initial anti-beta immunoaffinity columns (A + C + E) and were also significantly different (p = 0.007) from the sum of the [3H]muscimol binding sites found in the efflux of B, D, and F.

The efflux of the beta 1(350-404) column was then chromatographed on a beta 2(351-405) immunoaffinity column (Fig. 5B). On this second column all receptors containing beta 2 subunits were adsorbed, as indicated by the absence of beta 2 subunits in the column efflux (experiments not shown). In the same efflux, however, 21 ± 7% (mean ± SD; n = 3) of the original alpha 6 receptors could be precipitated using alpha 6(1-15) antibodies. Because GABAA receptors containing beta 1 as well as those containing beta 2 subunits now had been completely removed from the extract, the remaining 21% of the alpha 6 receptors thus contained only beta 3 subunits.

In other experiments, all receptors containing beta 2 subunits were first removed from the cerebellum extract using a beta 2(351-405) immunoaffinity column (Fig. 5C). In the efflux of this column, only 34 ± 2% (mean ± SD; n = 4) of the original alpha 6 receptors were present. From this it can be concluded that 66% of all alpha 6 receptors contained a beta 2 subunit. A subsequent chromatography on a beta 3(345-408) column (Fig. 5D) eliminated an additional 24% of the alpha 6 receptors. The remaining 10 ± 1% (mean ± SD; n = 3) of receptors thus contained only beta 1 subunits.

Finally, the cerebellum extract was chromatographed first on a beta 3(345-408) column. In the efflux of this column, 63 ± 2% (mean ± SD; n = 4) of the alpha 6 receptors were still present (Fig. 5E), indicating that ~37% of all alpha 6 receptors contained a beta 3 subunit. A subsequent chromatography on a beta 1(350-404) column removed an additional 12% of alpha 6 receptors. The remaining 51 ± 8% (mean ± SD; n = 3) of alpha 6 receptors thus contained only beta 2 subunits.

Interestingly, a comparison of the proportion of alpha 6 receptors retained by the beta  subunit-specific columns from the original extract with that remaining in the extract after removal of the other two beta  subunits revealed striking and statistically significant differences (see legend to Fig. 5 ). Although 15% of all alpha 6 receptors were removed by the beta 1 column from the original extract (Fig. 5A), only 10% of alpha 6 receptors were left after elimination of all beta 2 and beta 3 subunits (Fig. 5D). Although 66% of all alpha 6 receptors were removed by the beta 2 column from the original extract (Fig. 5C), only 51% of these receptors were left after removal of beta 1 and beta 3 receptors (Fig. 5F). Finally, although 37% of all alpha 6 receptors were removed by the beta 3 column from the original extract (Fig. 5E), only 21% of these receptors were left after removal of beta 1 and beta 2 subunits (Fig. 5B).

In addition, the sum of alpha 6 receptors retained by the beta 1, beta 2, and beta 3 columns from the original extract was 118% (Fig. 5A,C,E), whereas the sum of the receptors remaining in the extract after two of the three beta  subunits had been removed was 82% (Fig. 5B,D,F). These differences could not be explained by a cross-reactivity of the antibodies, because beta 1, beta 2, or beta 3 antibodies were unable to precipitate recombinant alpha 1beta xgamma 2 receptors containing the wrong beta  subunit (experiments not shown). These data therefore suggest that 18% of the alpha 6 receptors in cerebellum contain more than one type of beta  subunit. Because of the variability of binding data, however, a further calculation of the proportion of receptors containing beta 1beta 2, beta 1beta 3, or beta 2beta 3 subunit combinations does not provide reliable results.

    DISCUSSION
Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References

Composition and quantitative importance of GABAA receptors containing alpha 6 subunits

In the present investigation, 13 antibodies, each one highly specific for a different GABAA receptor subunit, were used to investigate the subunit composition and quantitative importance of GABAA receptors containing alpha 6 subunits. Chromatography on an alpha 6(429-434) immunoaffinity column quantitatively removed alpha 6 subunits and 45 ± 1% of all GABAA receptors from cerebellar extracts, supporting previous conclusions (Khan et al., 1996; Jones et al., 1997) that 45% of all GABAA receptors in the cerebellum contain the alpha 6 subunit. In the eluate of this column, in addition to the alpha 6 subunit, only alpha 1, beta 1, beta 2, beta 3, gamma 2, and delta  subunits of GABAA receptors could be demonstrated, suggesting that any one of these subunits can be colocalized with alpha 6 subunits in native GABAA receptors.

In contrast, alpha 2, alpha 3, alpha 4, alpha 5, gamma 1, or gamma 3 subunits did not co-purify with alpha 6 subunits. This is to be expected for alpha 2, alpha 3, alpha 5, or gamma 1 subunits, which are not expressed in the granule cells of cerebellum (Persohn et al., 1992; Wisden et al., 1992). The existence of minor amounts of receptors containing gamma 3 and alpha 6 subunits has been demonstrated previously after purification of GABAA receptors by a gamma 3 subunit-specific immunoaffinity column (Tögel et al., 1994). The observation that alpha 4 subunits did not co-purify with alpha 6 subunits, although these subunits are expressed in cerebellar granule cells and could be identified in cerebellar extracts (E. Bencsits, V. Ebert, and W. Sieghart, unpublished data), indicates that receptors containing alpha 4 as well as alpha 6 subunits, if they exist at all, are quantitatively not important. Thus, the great majority of alpha 6 subunit-containing GABAA receptors is composed of alpha 6 and alpha 1, beta 1, beta 2, beta 3, gamma 2, or delta  subunits.

A new strategy for the determination of the subunit composition and quantitative importance of hetero-oligomeric receptors

A random assembly of alpha 6 subunits with six other subunits into pentameric receptors (Nayeem et al., 1994; Tretter et al., 1997) would result in a total of 210 GABAA receptor subtypes with distinct subunit composition. It is impossible to isolate a single receptor subtype from an even much less heterogeneous mixture by immunoenrichment. In the present study, therefore, immunodepletion was used to purify and characterize GABAA receptors. Receptors containing one of the co-purifying subunits were eliminated from extracts by chromatography on subunit-specific antibodies. Quantification and Western blot analysis of alpha 6 receptors remaining in the extract then allowed us to estimate the proportion of alpha 6 receptors containing the eliminated subunit and to determine the composition of the remaining receptors. Repeating this procedure by eliminating all co-purifying subunits in parallel or subsequent experiments finally allowed us to identify the subunit composition of alpha 6 receptor subtypes and to determine their quantitative importance.

alpha 1, gamma 2, or delta  subunit-containing alpha 6 receptors

In agreement with previous studies (Khan et al., 1994, 1996; Pollard et al., 1995), 52% of the [3H]muscimol binding sites precipitated by alpha 6(1-15) antibodies could be eliminated from cerebellar extracts by an alpha 1 subunit-specific column, indicating that alpha 1alpha 6 receptors are as abundant as receptors containing homogeneous alpha 6 subunits (Table 1). Other experiments indicated that 70% of alpha 6 receptors could be eliminated from cerebellar membrane extracts by a gamma 2 subunit-specific (Fig. 4) and 30% by a delta  subunit-specific column (Fig. 3). In addition, it was demonstrated that gamma 2 and delta  subunits did not co-purify with each other, supporting the conclusion that these subunits do not co-exist in the same GABAA receptor (Quirk et al., 1995).

Furthermore, the number of [3H]Ro 15-4513 binding sites removed from cerebellar extracts by alpha 6(429-434) or alpha 6(1-15) antibodies was 69% or 71% of the [3H]muscimol binding sites eliminated by these antibodies, respectively. Because [3H]Ro 15-4513 binding sites are present on GABAA receptors containing alpha gamma or alpha beta gamma subunits and [3H]muscimol binding sites are present on receptors composed of alpha beta , alpha beta gamma , and alpha beta delta subunits (Quirk et al., 1995; Sieghart, 1995; Zezula et al., 1996), these data agree with the conclusion that 70% of the alpha 6 receptors contained a gamma 2 subunit. The observation that the [3H]muscimol binding sites of gamma 2 or delta  subunit-containing alpha 6 receptors add up to 100% additionally indicates that all alpha 6 receptors contain either a gamma 2 or a delta  subunit. From this it can be concluded that receptors composed of alpha 6beta x subunits, and consequently also those composed of alpha 6gamma 2 subunits, which would contribute to [3H]Ro 15-4513 but not to [3H]muscimol binding sites, are not significantly expressed in cerebellum.

Further fractionation of the 70% alpha 6 receptors containing gamma 2 subunits using an alpha 1 subunit-specific column indicated that 37 ± 3% of alpha 6 receptors are composed of alpha 1alpha 6beta xgamma 2 and 32 ± 3% of alpha 6beta xgamma 2 subunits. alpha 1alpha 6beta xgamma 2 receptors have been identified previously (Khan et al., 1994, 1996; Pollard et al., 1995), and quantification of these receptors led to comparable results (Khan et al., 1994).

Recombinant receptor studies have indicated that alpha 6beta xgamma 2 receptors, in contrast to alpha 1beta xgamma 2 receptors, exhibit a high affinity [3H]Ro 15-4513 binding that could not be inhibited by diazepam (Lüddens et al., 1990; Sieghart, 1995). Other studies have indicated that in GABAA receptors containing alpha 6 and alpha 1 (Khan et al., 1996) or alpha 1 and alpha 3 subunits (Araujo et al., 1996), each one of the subunits expressed its characteristic benzodiazepine pharmacology. Because 32% of alpha 6 receptors are composed of alpha 6beta xgamma 2, whereas 37% are composed of alpha 1alpha 6beta xgamma 2 subunits, these two receptor subtypes are responsible for 46.4% and 53.6% of all [3H]Ro 15-4513 binding sites precipitated by alpha 6(1-15) antibodies, respectively. Assuming that alpha 6beta xgamma 2 receptors contain two alpha 6 subunits (Im et al., 1995), these two receptor subtypes contain a total of 73% alpha 6 and 27% alpha 1 subunits. The present observation that 23 ± 2% of [3H]Ro 15-4513 binding precipitated by alpha 6(1-15) antibodies could be inhibited by diazepam is supported by a recent study (Khan et al., 1996) and is in agreement with the conclusion that each one of the subunits expresses its characteristic benzodiazepine pharmacology.

Further fractionation of the 30% alpha 6 receptors containing delta  subunits using an alpha 1 subunit-specific column indicated that 15 ± 3% of all alpha 6 receptors were composed of alpha 1alpha 6beta xdelta and 14 ± 2% of alpha 6beta xdelta receptors. Although the existence of alpha 1alpha 6beta xdelta receptors in cerebellum has been implicated previously (Pollard et al., 1995), their abundancy was not determined.

beta Subunit composition of alpha 6 receptors

When beta 1-, beta 2-, and beta 3-specific immunoaffinity columns were used to eliminate GABAA receptors from cerebellar extracts in parallel experiments, it was demonstrated that the total percentage of alpha 6 receptors removed was 118%. In the absence of a significant cross-reactivity of the beta 1, beta 2, or beta 3 subunit-specific antibodies, these data suggested the colocalization of different beta  subunits in 18% of the alpha 6 receptors. This conclusion is supported by recent evidence indicating the colocalization of two different beta  subunits in native receptors (Li and De Blas, 1997). The proportion of alpha 6 receptors containing homogeneous beta  subunits was then determined by measuring alpha 6 receptors remaining in the extract after the removal of the other two beta  subunits. The results obtained indicated that 10, 51, or 21% of all alpha 6 receptors contained homogeneous beta 1, beta 2, or beta 3 subunits, respectively. Because of the variability of binding data, a reliable estimation of the beta  subunit composition of the remaining 18% of alpha 6 receptors was not possible. The observation that beta 1 and beta 2 as well as beta 3 subunits are co-purifying with alpha 6 and gamma 2 (Fig. 3C) or alpha 6 and delta  subunits (Fig. 4C), however, indicates that the alpha 6beta xgamma 2 or alpha 6beta xdelta receptor subtypes might exist in up to six isoforms containing different beta  subunit combinations (homogeneous beta 1, beta 2, or beta 3 subunits, beta 1beta 2, beta 1beta 3, or beta 2beta 3). The same might be true for receptors consisting of alpha 1alpha 6beta xgamma 2 or alpha 1alpha 6beta xdelta subunits. Whether all of the resulting 24 alpha 6 receptors with different subunit composition actually exist cannot be answered by this study.

Subunit stoichiometry of native alpha 6 receptors

The present results, in agreement with studies investigating other receptors, indicate that native alpha 6 receptors can contain two different alpha  (Sieghart, 1995) or two different beta  subunits (Li and De Blas, 1997), and in addition contain either a gamma 2 or a delta subunit. Overall, these results suggest a subunit stoichiometry of two alpha , two beta , and one gamma  (or one delta ) subunit for native alpha 6 receptors. This is in agreement with studies investigating the subunit stoichiometry of alpha 6beta 2gamma 2 (Im et al., 1995) or of other recombinant receptors (Chang et al., 1996; Tretter et al., 1997). The method of subtractive purification of GABAA receptors developed in the present study can be used to investigate whether all native alpha 6 receptors exhibit this stoichiometry or whether other stoichiometries also exist (Backus et al., 1993). In addition, this method can also be applied to the investigation of other hetero-oligomeric receptors.

    FOOTNOTES

Received Nov. 6, 1997; revised Jan. 20, 1998; accepted Jan. 21, 1998.

This work was supported by Grants P9003-Med and P9828-Med of the Austrian Science Foundation and by the European Commission Biotechnology Programme, Project ERBBIO4CT960585. The participation of W. Kern in the initial experiments of this study is gratefully acknowledged.

Correspondence should be addressed to Dr. Werner Sieghart, Section of Biochemical Psychiatry, University Clinic for Psychiatry, Währinger Gürtel 18-20, A-1090 Vienna, Austria.

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Top
Abstract
Introduction
Materials & Methods
Results
Discussion
References

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