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The Journal of Neuroscience, May 15, 2001, 21(10):3350-3359
The Neuronal Microtubule-Associated Protein 1B
Is under Homeoprotein Transcriptional Control
María Luz
Montesinos1,
Isabelle
Foucher1,
Marcus
Conradt1,
Gaëll
Mainguy1,
Laurence
Robel1,
Alain
Prochiantz1, and
Michel
Volovitch1, 2
1 Centre Nationale de la Recherche Scientifique
Unité Mixte de Recherche 8542, Ecole Normale
Supérieure, 75230 Paris, Cedex 05 France, and
2 University Paris 7, Unité de Formation et de
Recherche de Biologie, 75005 Paris, France
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ABSTRACT |
To identify genes regulated by homeoprotein transcription factors
in postnatal neurons, the DNA-binding domain (homeodomain) of
Engrailed homeoprotein was internalized into rat cerebellum neurons. The internalized homeodomain (EnHD) acts as a competitive inhibitor of Engrailed and of several homeoproteins (Mainguy et al.,
2000 ). Analysis by differential display revealed that
microtubule-associated protein 1B (MAP1B)
mRNA is upregulated by EnHD. This upregulation does not require protein
synthesis, suggesting a direct effect of the homeodomain on
MAP1B transcription. The promoter region of MAP1B
was cut into several subdomains, and each subdomain was tested for its
ability to bind Engrailed and EnHD and to associate with
Engrailed-containing cerebellum nuclear extracts. In addition, the
activity, and regulation by Engrailed, of each subdomain and of the
entire promoter were evaluated in vivo by
electroporation in the chick embryo neural tube. These experiments
demonstrate that MAP1B promoter is regulated by Engrailed
in vivo. Moreover, they show that one promoter domain
that contains all ATTA homeoprotein cognate binding sites common to the
rat and human genes is an essential element of this regulation. It is
thus proposed that MAP1B, a cytoskeleton protein involved in neuronal
growth and regeneration, is under homeoprotein transcriptional regulation.
Key words:
neuronal morphogenesis; cytoskeleton; MAP1B; transcriptional targets; homeoproteins; engrailed; in vivo
electroporation; differential display
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INTRODUCTION |
Homeoproteins are homeogene-coded
transcription factors. They are characterized by a highly conserved
60-amino acid DNA-binding domain, the homeodomain (Gehring et al.,
1994 ), and play key roles at all developmental stages. In the mouse,
Engrailed homeogene expression starts at the one- and
five-somite stages for Engrailed1 (En1) and
Engrailed2 (En2), respectively. In the brain,
Engrailed transcripts are localized to the mid-hindbrain
region, and although En2 is expressed later than
En1, both genes show identical transcription patterns at the
eight-somite stage (Davidson et al., 1988 ; Davis and Joyner, 1988 ;
Davis et al., 1988 , 1991 ; McMahon et al., 1992 ). In the newborn,
En1 and En2 (from now on cited collectively as Engrailed) are expressed in large domains of the midbrain
and cerebellum, including the substantia nigra, locus coeruleus, and raphe (Davis and Joyner, 1988 ).
En1 targeting (Wurst et al., 1994 ) deletes the cerebellum
and midbrain, and the mice die at birth. In contrast, En2
mutants are viable and show only a mild phenotype: the cerebellum is
reduced in size and shows an abnormal folding pattern (Joyner et al., 1991 ; Millen et al., 1994 ). In the nervous system, the En1
phenotype is rescued by the insertion of the En2 coding
sequence into the En1 locus (Hanks et al., 1995 ). This
suggests that the diverging phenotypes of both mutants are caused by
differences in times and sites of expression and not by differences in
the biochemical activities of the proteins.
Although homeoproteins probably regulate the expression of a wide
variety of genes, few direct homeoprotein target genes have been
identified (Graba et al., 1997 ; Mannervik, 1999 ). In vertebrates, identified Engrailed targets are fibroblast growth factor-8
(FGF-8) (Gemel et al., 1999 ) and Pax-6
(Araki and Nakamura, 1999 ). RAGS and ELF-1 genes,
encoding ligands for Eph-like receptors, have also been proposed as
putative Engrailed targets. Indeed, En1 gain of function in
the chick embryo rostral tectum provokes an abnormal transcription of
the two genes at the site of En1 overexpression (Logan et
al., 1996 ).
Several homeodomains are internalized by cells in culture (for review,
see Prochiantz, 2000 ) and conveyed to their nucleus, where they
specifically interfere with transcription (Le Roux et al., 1995 ). This
property has been exploited to antagonize the binding of endogenous
homeoproteins to their cognate promoters in physiological conditions.
Homeodomain internalization and activity have allowed us to identify
BPAG1 as a direct homeoprotein target gene, in a protocol in
which EnHD was used as an inducer in a gene trap library of embryonic
stem (ES) cells (Mainguy et al., 1999 , 2000 ). BPAG1 is a
cytoskeletal protein of the plakin family (Houseweart and Cleveland,
1999 ) with epidermal and neuronal isoforms.
The present work aimed to identify homeoprotein target genes not in
"epiblast-like" ES cells but in postnatal cerebellar neurons. To
that end the transcripts expressed by cerebellum cells incubated with
or without EnHD were compared by differential display (Liang and
Pardee, 1992 ). We show that the microtubule-associated protein 1B (MAP1B) gene encoding a cytoskeletal protein is a
homeoprotein-regulated target.
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MATERIALS AND METHODS |
Cell cultures. Primary neurons were prepared as
follows. Fragments from posterior mesencephalon and cerebellum (rat
postnatal day 1) were incubated (5 min, room temperature) in
trypsin-EDTA, washed in phosphate buffer plus 33 mM glucose (PBS) and 10% fetal calf serum
(FCS), and incubated (10 min, 37°C) with 30 µg/ml DNase I (Sigma,
St. Louis, MO). The cells were dissociated mechanically, washed three
times with PBS, and plated at a density of 200,000 cells/cm2 on dishes (35 mm diameter)
coated with 1.5 µg/ml
D,L-polyornithine and 5 µg/ml laminin (Sigma). Culture medium (MSS) consisted of DMEM/F12
(1:1; Life Technologies, Cergy, France) with 33 mM glucose, 2 mM glutamine,
10 mM HEPES, pH 7.4, 9 mM
NaHCO3, 5 U/ml penicillin, 5 µg/ml
streptomycin. MSS was complemented with 0.1% ovalbumin, 25 µg/ml
insulin, 100 µg/ml transferrin, 20 nM
progesterone, 60 µM putrescine, and 30 nM selenium. CHP-100 cells (Schlesinger et
al., 1976 ) were grown in RPMI 1640 (Life Technologies,
Gaithersburg, MD) plus 15% FCS.
Differential display. Differential display was performed
essentially as described by Liang and Pardee (1992) with minor
modifications. In brief, 500 ng of total RNA (RNeasy kit; Qiagen,
Courtaboeuf, France) from cells treated or not with EnHD (300 ng/105 cells) in the presence of
cycloheximide (1 µM) and DNase I (15 µg/ml)
were reverse transcribed using Superscript II (Life Technologies), following the supplier's protocol. Before reverse transcription, RNA
was systematically treated with RNase-free DNase I (Promega, Charbonnières, France) to eliminate DNA contaminations and
repurified (RNeasy kit). Anchored oligo-dT primers used for reverse
transcription were 5'-AAG CTT TTT TTT TTT C-3' (HTC primer) or 5'-AAG
CTT TTT TTT TTT A-3' (HTA primer). PCR reactions were performed in the presence of 35S-dATP (>1000 Ci/mmol;
Amersham Pharmacia Biotech, Orsay, France) with the following cycles:
93°C for 30 sec, 39°C for 1 min, and 72°C for 1 min (3 cycles);
93°C for 30 sec, 43°C for 1 min, and 72°C for 1 min (37 cycles);
72°C for 5 min. PCR products were separated on 6% denaturing
sequencing gels that were dried on Whatman 3MM paper under vacuum and
subjected to autoradiography. Bands of interest were excised, eluted,
reamplified, and cloned in pBluescript (KS) vector (Stratagene, La
Jolla, CA). Partial sequencing was performed by standard techniques.
Primers leading to PCR amplification of clone 31 were 5'-AAG CTT ATT
GGT C-3' and HTC.
RNA isolation and Northern blot analysis. Total RNA (15-20
µg, RNeasy kit) was run in formaldehyde agarose gels and transferred by capillarity to Hybond-N+ membranes (Amersham Pharmacia Biotech), and
hybridizations were performed following manufacturer's instructions. Probes were labeled with -32P-dCTP
(3000 Ci/mmol; Amersham Pharmacia Biotech) by random priming (Rediprime
II system, Amersham Pharmacia Biotech). Glyceraldehyde 3-phosphate
dehydrogenase (GAPDH) probe was used as a control for RNA loading.
Radioactive signals were quantified on a Fujix BAS 1000 PhosphoImager
(Fujifilm Medical Systems, Stamford, CT).
Proteins. Chick En2 homeodomain (amino acids 200-259 of the
protein) was produced in Escherichia coli and purified by
FPLC on HiTrap heparin-Sepharose columns (Amersham Pharmacia Biotech) (Mainguy et al., 1999 ). A larger version of EnHD (amino acids 1-9
followed by amino acids 186-289) used in some gel shift assays was
produced from expression plasmid pTrc9mEn2 SP. This plasmid was
obtained by the transfer of myc-tagged En-2 ORF deleted between SmaI and PpuMI sites into a derivative of
pTrcHis2A vector (Invitrogen, Groningen, The Netherlands).
Glutathione S-transferase (GST)-En2 and GST proteins were
produced in E. coli and purified on Glutathione Sepharose 4B
beads (Amersham Pharmacia Biotech), following manufacturer's
instructions. GST-En2 fusion (gift from Dr. A. Joliot, Ecole Normale
Supérieure, Paris) was prepared by inserting a chick En2
coding sequence into a modified form of pGEX1 (Amersham Pharmacia Biotech).
Nuclear extracts from mouse neonatal (P0) cerebellum and posterior
mesencephalon were prepared as in Beckmann et al. (1997) . Dissected
tissues were homogenized in 5-7 ml of homogenization buffer: 20 mM HEPES, pH 7.9, 100 mM NaCl, 1.5 mM MgCl2, 0.5 mM EDTA,
0.7% Nonidet P 40, 0.5 mM dithiothreitol, 10% (w/v)
glycerol, and protease inhibitor mixture Complete 1× (Roche
Diagnostics, Meylan, France). After centrifugation (10 min, 2000 × g) and washing with 10 ml of homogenization buffer, the
pellets resuspended in 300-500 µl of high-salt buffer were incubated
for 30 min at 4°C on a rocker. High-salt buffer composition was 20 mM HEPES, pH 7.9, 0.5 M KCl, 0.5 mM EDTA, 0.5 mM
dithiothreitol, 25% (w/v) glycerol, Complete 1× (Roche Diagnostics).
Nuclear debris were removed by centrifugation at 14,000 × g for 30 min at 4°C, and supernatants were stored in
aliquots at 80°C. Protein concentration was determined by a
modified Bradford assay (Bio-Rad, Ivry, France), using bovine serum
albumin (BSA) as a standard.
Gel shift assays. DNA fragments were end labeled by filling
with Klenow-fragment polymerase and
-32P-dCTP. Binding reactions were
performed in a final volume of 20 µl (15 mM
HEPES, pH 8.0, 0.6 mM dithiothreitol, 6 mM MgCl2, 18% glycerol, 1 µg of salmon sperm DNA, and 10 µg of BSA). Salt concentrations
varied with conditions: 100 mM KCl (see Fig.
6A), 80 mM KCl (see Fig.
6B), 135 mM NaCl (see Fig.
5A), or 80 mM KCl plus 40 mM NaCl (see Figs. 5B, 7). After
incubation on ice for 30 min, DNA-protein complexes were analyzed on
5% polyacrylamide gels (acrylamide/bisacrylamide, 80:1) in 0.25×
TBE buffer (TBE 1× is 100 mM Trizma base, 95 mM boric acid, and 2 mM EDTA) and 2.5%
glycerol. For supershift experiments, probes were first incubated with
the nuclear extracts for 30 min on ice and then for an additional 30 min with a polyclonal antibody that recognizes both En1 and En2
proteins (Plaza et al., 1997 ) (a gift from Dr. S. Saule, Institut Curie, Orsay). In that case DNA-protein complexes were analyzed on 4%
polyacrylamide gels (acrylamide/bisacrylamide, 60:1) in 0.25× TBE
buffer and 2.5% glycerol. Gels were prerun at 4°C for 45 min at 130 V and run at 4°C for 1.5 hr at 240 V, dried, and subjected to autoradiography.
Cell transfection assays and in ovo
electroporation. The promoter region of MAP1B
(Liu and Fischer, 1996 ) was amplified by PCR using Vent
polymerase (New England Biolabs, Beverly, MA), genomic rat DNA as
template, and oligonucleotides pMAP1 (5'-TTA TTG CAG ACC CCC AGT GTG
A-3') and pMAP2 (5'-CCT GCC GGC TCT GCT AAA GCC T-3'). The 1.7 kb DNA
fragment generated (position 1626 to +60) was cloned in the
Klenow-filled HindIII site of pGL2-basic (Promega, Madison,
WI) to generate plasmid pMAP-luc, or into the Klenow-filled
HindIII site of p gal-basic (Clontech, Palo Alto, CA) to
generate pMAP-lacZ.
Plasmid pD-lacZ (see Fig. 8) was obtained by insertion of
the Klenow-filled BsaHI-BssHII fragment from
pMAP-luc (containing promoter region D) into the
Klenow-filled HindIII site of p gal-basic. To generate
pE-lacZ (see Fig. 8), plasmid pMAP-luc was cut
with HindIII and BssHII, treated with Klenow
enzyme, and religated, and the resulting plasmid was cut with
BglII and NaeI to obtain promoter fragment E,
which was cloned between sites BglII and HindIII
(Klenow-filled) of p gal-basic. Plasmid pABCD-lacZ (see Fig. 8) was obtained by insertion of the Klenow-filled
HindIII-BssHII fragment from pMAP-luc
(containing promoter regions A, B, C, and D) into the Klenow-filled
HindIII site of p gal-basic. To obtain pCD-lacZ
(see Fig. 8), a fragment containing promoter region C was obtained by
MscI-BsaHI digestion of pABCD-lacZ,
Klenow-filled, and cloned in the Klenow-filled BglII site of
plasmid pD-lacZ.
Expression plasmids coding for CMV promoter-driven myc-tagged chick En2
(pCL9mEn2) (Mainguy et al., 2000 ), En2 HD1 (pCL9mEn2 H1; derived
from pTL1mEn2 H1) (Joliot et al., 1998 ), and mouse Hoxa5 (pCL9A5m;
derived from pSP9A5m) (Chatelin et al., 1996 ) were transfected by
electroporation. For cell electroporation, a Bio-Rad Gene Pulser II
apparatus and 4-mm-gap cuvettes were used (260 V and 1050 µF in 350 µl of culture medium). In Figure 4A, 0.5 × 106 cells were transfected with 2 µg of reporter
plasmid and the indicated amounts of expression plasmid, plus empty
parental vector (pCL9m) to keep the total amount of DNA constant. In
Figure 4B, 106 cells
were transfected with 2 µg of reporter and 6 µg of expressing plasmid, in duplicate. Frequency and nuclear localization of
transfected homeoproteins were verified by immunocytochemistry with
anti-myc 9E10 antibody (Evan et al., 1985 ). Luciferase activity was
measured 24 hr after transfection (Le Roux et al., 1995 ) in a Lumat
luminometer (Berthold, Bald Wilbald, Germany).
Electroporation of chick embryos at stage HH9-11 (Hamburger and
Hamilton, 1951 ) was performed as described (Muramatsu et al., 1997 ),
using a BTX Electrosquareporator T820 apparatus (four pulses of 25 V
and 50 msec) (Genetronics, San Diego, CA). The appropriate reporter
plasmid and control or En2 expression plasmids were injected into the
neural tube with a micropipette. After 24 hr of incubation at 37°C,
embryos were fixed and stained for -galactosidase activity (Hogan et
al., 1994 ).
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RESULTS |
Isolation of MAP1B cDNA by differential display
To find genes controlled by Engrailed we looked for modifications
in expression profiles of postnatal rat cerebellum neurons on treatment
by EnHD. Postnatal day 1 cerebellums were dissociated, plated for 4 hr,
and incubated for another 12 hr with or without EnHD (in duplicate), in
the presence of cycloheximide to prevent protein synthesis and
regulation of indirect targets (Mainguy et al., 1999 ). Cycloheximide
was not toxic because its removal allowed all neurons to resume
differentiation (data not shown). In these conditions EnHD was
internalized by the cells and could be visualized in the nucleus by
immunocytochemistry as reported earlier (Mainguy et al., 1999 ).
Expression profiles were then analyzed by differential display (Liang
and Pardee, 1992 ).
Total RNA samples were reverse transcribed in duplicate with one of two
different anchored oligo-dT primers (HTA or HTC primers). The subsets
of mRNAs defined by each of these primers were amplified by PCR using
12 different 13-mers with arbitrary sequences in combination with the
corresponding oligo-dT primer. Samples derived from EnHD-treated and
control cells showed a small number of differentially expressed bands
(Fig. 1A,
asterisks). One cDNA, more abundant in treated than in
control cells (Fig. 1A), was reamplified by PCR,
cloned, and partially sequenced (Fig.
2B). Clone 31 contains a 1.1 kb sequence present in the 3' untranslated region (nucleotide positions 1838-2961; GenBank accession number: AF115776) of MAP1B (Meixner et al., 1999 ) (Fig. 2). Differential
expression of MAP1B was confirmed by Northern blot analysis
using RNA isolated from rat cerebellum neurons, incubated or not with
EnHD in the presence of cycloheximide. A representative Northern blot
showing that EnHD increases the expression level of MAP1B by
twofold is presented in Figure 1B.

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Figure 1.
Identification of clone 31 (MAP1B
gene) by differential display. A, Duplicate RT and PCR
reactions were performed and run in adjacent gel lanes. The positions
of some differentially expressed bands are indicated with
asterisks. The band corresponding to clone 31 is also
indicated. B, Northern blot of total RNA from control or
EnHD-treated cells probed with clone 31 or GAPDH cDNA
fragments.
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Figure 2.
Localization of clone 31 in the
MAP1B genomic locus. A, Schematic
representation of the rat MAP1B locus [modified from
Kutschera et al. (1998) and Meixner et al. (1999) ]. The most frequent
MAP1B transcripts (90% of total MAP1B
mRNA) are encoded by exons 1-7 (solid lines indicate
splicing). Alternative MAP1B transcripts are encoded by
exon 3U/3-7 (splicing indicated by a dashed line) and
by exon 3A/3-7. Clone 31 localization is shown. B,
Sequence alignments of clone 31 5' (top) and 3'
(bottom) regions with mouse MAP1B 3'
untranslated region (UTR) and rat expressed-sequence
tags (EST) AW530133 and AI008511. Residues that
differ from clone 31 are shaded in black.
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Regulation of MAP1B promoter activity
by homeoproteins
The promoter region of the rat MAP1B gene (Liu
and Fischer, 1996 , 1997 ) contains two independent TATA boxes and
several regulatory motifs, including two cAMP-responsive elements, an
Sp1 site, a "neuronal motif," and a TCC repeat motif (Fig.
3A). The MAP1B promoter region (nucleotide positions 1626 to +60) was cloned in
front of a luciferase reporter gene (pGL2bas promoter-less vector).
This construct (pMAP-luc) was tested by transient
transfection of a human neuroepithelial cell line (CHP-100) (Mainguy et
al., 1999 ). Figure 4A
illustrates that transfecting increasing amounts of a plasmid
expressing En2 leads to a dose-dependent activation of the
MAP1B promoter.

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Figure 3.
MAP1B promoter region. A, Promoter
of the rat MAP1B gene: the two TATA boxes, 5' capping
sites, and putative regulatory motifs described previously (Liu and
Fischer, 1996 , 1997 ) are shown. The positions of ATTA or TAAT sites are
indicated by filled circles and numbered
1-16. Asterisks indicate
ATTA sites conserved in the putative human MAP1B
promoter (GenBank accession number: AC021318). Positions of fragments
A, B, C, D,
and E used in gel-shift assays and restriction sites
used for their isolation are also indicated. B, Sequence
comparison of rat and human MAP1B promoters showing one
of the two conserved regions. A BLAST search using the rat
MAP1B promoter sequence (GenBank accession number:
U55276) was made against the unfinished human genome. Conserved
ATTA/TAAT sites are boxed; the nonconserved TAAT site is
indicated by a solid line. Residues that differ from rat
sequence are shaded in black.
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Figure 4.
Regulation of MAP1B promoter
activity in a neuroepithelial cell line. A,
Cotransfection of CHP-100 cells with the
MAP1B-luciferase reporter plasmid
pMAP-luc and increasing amounts of En2-expressing
plasmid (DNA was kept constant by adding the empty plasmid).
B, Cotransfection of CHP-100 cells with
pMAP-luc and empty vector
(control) or with a plasmid expressing
full-length En2 protein (En2), En2 deleted in the
homeodomain (En2 HD1), or full-length
Hoxa5 protein (Hoxa5). Luciferase activity of cell
extracts after 24 hr is indicated in relative light units
(RLU).
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The En2-mediated activation of MAP1B promoter was not
observed when an En2 HD1-expressing plasmid was used (Fig.
4B). En2 HD1 (Joliot et al., 1998 ) is an En2 mutant
lacking amino acids 36-46 in the homeodomain; it is still addressed to
the nucleus but does not bind DNA (data not shown). To test whether
other homeoproteins were also active, pMAP-luc and
Hoxa5 coding plasmid were cotransfected in CHP-100 cells.
Figure 4B shows that Hoxa5 also regulates
MAP1B promoter activity ex vivo.
Identification of Engrailed-binding sites within the
MAP1B promoter region
The MAP1B promoter contains several putative
homeoprotein binding sites (ATTA or TAAT sites) (Fig. 3). Five DNA
fragments (from A to E) covering the entire MAP1B promoter
region were generated (Fig. 3A), and each fragment was used
in gel-shift experiments. Fragments A and E (417 and 138 bp,
respectively) contain one ATTA site (overlapping the TATA-2 box in the
case of fragment E); fragments B (421 bp) and C (547 bp) contain 10 and
7 ATTA sites, respectively; fragment D (398 bp) contains no ATTA
sequence. Purified EnHD (Fig. 5A) and GST-En2 protein (Fig.
5B) retarded probes A, B, C, and D (the latter to a lesser
extent) but failed to retard probe E even when a sevenfold excess of
GST-En2 protein was used in the binding reaction (data not shown).

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Figure 5.
EnHD and full-length En2 bind to the
MAP1B promoter. A, Purified EnHD ( , no
protein; +, 50 ng of EnHD) was incubated with 1 ng of the indicated
MAP1B promoter fragment (from A to
E). B, Two different amounts (625 ng or
1.25 µg) of full-length En2 (GST-En 2)
protein or 5 µg of GST protein were incubated with 0.4 ng of the
indicated MAP1B promoter fragment (from A
to E). Designation of MAP1B probes refers
to promoter regions indicated in Figure 3A. Note that
the five probes are of different sizes and thus migrate with different
velocities.
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Gel-shift assays were then performed with nuclear extracts from P0
mouse cerebella. Probes A, B, C, and D (although to a lesser degree),
but not E, were retarded (Fig.
6A), indicating the
existence, in the nuclear extract, of one or more factors that
specifically recognize the DNA fragments. That Engrailed is one of
these factors was confirmed by a supershift experiment using a
polyclonal anti-Engrailed antibody (Fig. 6B).
Finally, to test whether Engrailed forms an active complex with factors
in the nuclear extract, a supershift experiment was achieved by adding
GST-En2. Figure 7 illustrates that
GST-En2 (Fig. 7A), but not GST alone (Fig. 7B),
interacts with one or several factors. Taken together, these results
demonstrate that Engrailed is present in the extracts and recognizes
different fragments of the MAP1B promoter in an appropriate
molecular context.

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Figure 6.
Cerebellum nuclear extracts bind the
MAP1B promoter, and the binding complex contains
Engrailed. A, Binding of increasing amounts (0, 0.5, 1, or 2 µg) of nuclear extract from P0 mice cerebellum to fragments
A, B, C, D,
and E (0.4 ng). B, Supershift assay of
fragments A, B, C,
D, E, and C+E (0.5 ng
each) using an anti-Engrailed antibody (2.5 µl of a dilution 1:10)
and 1 µg of nuclear extract. Designation of MAP1B
probes refers to promoter regions indicated in Figure
3A. Note that the five probes are of different sizes and
thus migrate with different velocities.
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Figure 7.
Enhanced retardation of MAP1B
promoter by GST-En2 and cerebellum nuclear extract. A,
Band-shift assays with MAP1B probes A to
E (0.4 ng) with (+) or without ( ) 2 µg of cerebellum
nuclear extract and/or 1.25 µg of GST-En2. B,
Band-shift assays with fragments A to E
(0.4 ng) with (+) or without ( ) 2 µg of cerebellum nuclear extract
and/or 10 µg of GST. Designation of MAP1B probes
refers to promoter regions indicated in Figure 3A. Note
that the five probes are of different sizes and thus migrate with
different velocities.
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Repression of MAP1B promoter activity by Engrailed
in the neural tube of chick embryos
The results described above demonstrate that Engrailed binds
different fragments in the MAP1B promoter and
regulates the expression of this promoter in transfected
neuroepithelial cells. To better sustain the idea that MAP1B
is regulated by Engrailed and to identify which domains in the promoter
are involved, several lacZ-reporter constructions (Fig.
8) were expressed in the neural tube of
chick embryos at stage HH9-11 (Hamburger and Hamilton, 1951 ), and
their expression was analyzed 1 d later.

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Figure 8.
MAP1B reporter plasmids for in ovo
electroporations. The indicated regions of the MAP1B
promoter were fused to a lacZ-reporter gene. ATTA sites
are indicated with filled circles.
Letters refer to regions indicated in Figure
3A.
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Full-length MAP1B promoter is expressed in vivo
and repressed by Engrailed (Fig.
9A). On the basis of cell
transfection assays, Liu and Fischer (1996) have proposed that the two
MAP1B TATA boxes, in association with their adjacent
regulatory cis-elements, function independently and confer
neuron-specific expression. To test whether each TATA box is repressed
by Engrailed in the developing chick neural tube, pD-lacZ
and pE-lacZ were electroporated with or without Engrailed.
Plasmid pD-lacZ contains TATA box1 (TATA-1) and associated upstream motifs (Fig. 3A), and plasmid pE-lacZ
contains TATA box2 (TATA-2) and the upstream Sp1 motif (Fig.
3A). As illustrated in Figure 9, only pD-lacZ is
active (Fig. 9B), whereas pE-lacZ shows no basal
neural activity (Fig. 9C) and neither construct expression
is regulated by Engrailed. Because some activity was observed in
adjacent non-neural tissue in several embryos, it is likely that TATA-2
can drive lacZ expression but lacks the motifs necessary for
neural expression.

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Figure 9.
Activity of MAP1B
promoter fragments in the developing chick neural tube. Chick embryos
(HH9-11) were co-electroporated with empty
(control) or En2-expressing (En2)
plasmids, together with the following lacZ-reporter
plasmids: A, pMAP-lacZ; B,
pD-lacZ; C, pE-lacZ;
D, pABCD-lacZ; E,
pCD-lacZ. Embryos were stained for -galactosidase
activity 24 hr after electroporation. Histograms show the percentage of
electroporated embryos for each condition showing strong (+++/++), weak
(+), or no ( ) -galactosidase activity. The number
of embryos for each condition is indicated on the top of
the corresponding bar. Examples of -galactosidase
expression in each experimental condition are shown on the right
side of the Figure.
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Fragment D contains no ATTA sequence and is not repressed by Engrailed.
We thus tested whether fragment ABC, which contains all ATTA sequences,
confers regulation. Figure 9D illustrates the expression of
pABCD-lacZ in the neural tube and its repression by En2.
Little difference was observed between pABCD-lacZ and the
full-length promoter (Fig. 9, compare A and D).
Aligning human and rat sequences highlights two homologous
MAP1B promoter regions and, in particular, shows that only
ATTA sites at positions 9, 10, 12, and 13 of the rat promoter (Fig.
3B) are conserved between rat and human. Because fragment C
contains all of these conserved sites (Fig. 3), pCD-lacZ was
electroporated in the chick neural tube with or without Engrailed.
Figure 9E confirms that motifs in fragment C mediate the
regulation of MAP1B promoter by Engrailed.
 |
DISCUSSION |
This study demonstrates that MAP1B is a homeoprotein
target and, most probably, an Engrailed target. This conclusion is
based on the following series of experiments. First, EnHD
internalization in primary cerebellum neurons provokes an accumulation
of MAP1B mRNA in the presence of cycloheximide. Second,
cerebellum nuclear extracts retard several fragments of the
MAP1B promoter, and Engrailed is present in the retarded
complex. Finally, the promoter is active and regulated by Engrailed
in vivo.
Technology
A differential display approach was associated with the
internalization of EnHD by cerebellum primary neurons. The molecular basis of homeodomain internalization has been well established, and it
is now clear that specific properties of the third helix are involved
(Prochiantz, 1996 ; Derossi et al., 1998 ). The absence of chiral
receptors and the translocation across artificial lipid layers (Thoren
et al., 2000 ) explain why homeodomains gain direct access to the
cytoplasm and thereafter, through the nuclear pores, to the nucleus.
Internalized homeodomains compete with endogenous homeoproteins for
cognate binding sites in the genome. This was shown by the use of the
homeodomain of Antennapedia (AntpHD) and by its mutated version where
glutamine in position 50 has been replaced by an alanine (AntpHD-50A).
Indeed, AntpHD-50A is internalized and conveyed to the nucleus but
does not bind DNA with high affinity (Le Roux et al., 1993 ) and,
contrary to AntpHD, does not regulate gene expression (Le Roux et al.,
1995 ; Mainguy et al., 1999 ).
Advantageously, homeodomains internalized by all cells in culture only
bind accessible sites in an unmodified chromatin context. Moreover,
cycloheximide can be added to identify direct targets. Another
interesting aspect of this approach is its relative absence of
specificity: wild-type homeodomains with a glutamine in position 50 will recognize a large number of sequences accessible to various homeoproteins of the Q50 family. This is why homeodomain
internalization will reveal targets shared by several homeoproteins.
Target induction by homeodomains is thus a first step in the
identification process as illustrated by this study and by previous
work in which BPAG1 was identified as a homeoprotein target
(Mainguy et al., 2000 ).
In vitro promoter analysis
The MAP1B promoter region (Liu and Fischer, 1996 )
shows 16 putative homeoprotein binding sites. Gel-shift experiments
demonstrating Engrailed binding to four promoter fragments (fragments
A, B, C, and D) support a direct regulation of MAP1B
expression by Engrailed. In fact, the use of a protein synthesis
inhibitor (cycloheximide) in the differential display protocols
prevents cascade effects and favors the isolation of targets directly
regulated by EnHD.
The ATTA motif present in fragment E (which is not retarded) overlaps
the second TATA box of the MAP1B promoter (Liu and Fischer, 1996 ) and probably does not represent a physiological
homeoprotein-binding site. In contrast, fragment D does not contain any
ATTA site but forms a complex with EnHD or En2. However, a comparison
of bound versus free probe in gel-shift experiments (same amounts of
probe and protein for all fragments) suggests that the relative
affinity of Engrailed for the probes is C B>A>D (Fig. 5B)
and that the affinity between En2 and D is low.
Gel-shift experiments gave similar results when purified EnHD, GST-En2,
or cerebellum nuclear extracts were used. Engrailed is abundant in the
cerebellum at P0 and in the nuclear extracts (data not shown). As
demonstrated by the supershift experiments, Engrailed is part of the
retarded complexes formed between the probes and proteins in the
nuclear extract. Although in these retarded complexes Engrailed might
not bind directly to the promoter, the fact that purified En2 binds
directly and that nuclear extracts and purified En2 show the same order
of relative affinities for the five fragments is very much in favor of
a direct binding.
Enhanced retardation of MAP1B promoter probes when En2 is
added to cerebellum nuclear extracts (Fig. 7) suggests the presence of
cofactors. Groucho/TLE and Exd/Pbx are recognized cofactors of
Engrailed in invertebrates and vertebrates. Groucho/TLE proteins do not
bind DNA but are co-repressors of several transcription factors,
including Hairy-related, Runt domain, and Engrailed proteins (for
review, see Fisher and Caudy, 1998 ; Chen and Courey, 2000 ). In
contrast, Pbx homeoproteins have the ability to modulate the binding
activity of Hox and Engrailed through cooperative DNA binding (Chang et
al., 1995 ; van Dijk et al., 1995 ). In rat embryos, Pbx1 and
Engrailed show overlapping expression patterns (Roberts et
al., 1995 ), and Pbx1 is detected by Western blot in cerebellum nuclear
extracts (data not shown). However, the possibility that added purified
En2 binds Pbx1 or other cofactors present in the extract has not been investigated.
Ex vivo and in ovo
promoter activity
Transfections in the neuroepithelial cell line CHP-100 provided
some interesting information. First, Engrailed regulates
MAP1B promoter activity, and this regulation is lost
when 11 amino acids are deleted in the homeodomain. It was indeed
verified that the mutated protein is synthesized and accumulates in the
nucleus. Second, Hoxa5, another member of the Q50 homeoprotein family, also regulates MAP1B promoter expression. This supports the
idea that different Q50 homeoproteins may regulate the same target genes (Biggin and McGinnis, 1997 ), including MAP1B. This is
not a surprise because homeoproteins are region-specific transcription factors, whereas MAP1B is expressed in all neurons and not
specifically in the mid-hindbrain.
En2 represses the MAP1B promoter after electroporation in
the chick neural tube, a gain of function protocol that permits the
study of gene activity in vivo (in ovo, rather),
thus in a physiological context. This repression is in agreement with
the differential display results because internalized EnHD antagonizes Engrailed activity (Mainguy et al., 2000 ) and leads to an upregulation of the MAP1B transcript in cultured midbrain and cerebellum
neurons. The in ovo experiments show that overexpressed
Engrailed completely downregulates MAP1B promoter activity.
This does not mean that Engrailed-expressing neurons do not express
MAP1B but that Engrailed acts in conjunction with other
transcription factors to regulate the appropriate levels of the
protein. In fact, it must be kept in mind that the activity of a
transcription factor is both dose and context dependent. For example,
in Drosophila, Engrailed either activates or represses
polyhomeotic, and the two opposite effects depend
both on Engrailed concentration (high concentrations are inhibitory)
and on the presence of Exd as a cofactor (necessary for activation)
(Serrano and Maschat, 1998 ). Another example is given in this study
because Engrailed is a repressor of MAP1B promoter activity
in neuronal cells and an activator in CHP-100 cells.
Expression in the chick embryo of the different reporter constructs
demonstrates that only TATA box1 (and not TATA box2, in fragment E) is
active in the nervous system. These experiments also show that
fragment D is not regulated by Engrailed in vivo and suggest
that the lower in vitro affinity of Engrailed for fragment D
(in comparison with the other fragments) is physiologically relevant.
This has allowed us to use the TATA box of fragment D to test C domain
activity by electroporating pCD-lacZ and to show that this
domain, which contains all ATTA sequences conserved between rat and
human, permits regulation by Engrailed. pMAP-lacZ, pABCD-lacZ, and pCD-lacZ constructions are active
in the mid-hindbrain region (Fig. 9) where Engrailed is
normally expressed, and repression follows Engrailed electroporation.
As already discussed in the case of polyhomeotic, this
illustrates that MAP1B regulation by Engrailed is probably
dose dependent and that the presence of physiological amounts of
Engrailed is compatible with MAP1B expression.
In Drosophila, Engrailed, and Futsch
(a MAP1B-like gene) (Hummel et al., 2000 ; Roos et al., 2000 )
are ectopically expressed in Tramtrack mutants (Xiong and
Montell, 1993 ; Giesen et al., 1997 ). Because Tramtrack (a zinc-finger
transcription factor) binds the Engrailed promoter (Read and
Manley, 1992 ), an appealing possibility is that a direct genetic
interaction between Engrailed and MAP1B has been
conserved in several species, including human, rat, chick, and possibly
Drosophila.
Physiological significance
MAP1B, a major component of the neuronal cytoskeleton (Bloom et
al., 1984 , 1985 ), is the earliest MAP expressed during brain development (Riederer et al., 1986 ), reaching highest expression levels
2-3 d after birth. In the adult, MAP1B is downregulated (Safaei and Fischer, 1989 ; Garner et al., 1990 ), except in regions that
retain high levels of axonal growth and synaptic plasticity, for
example, the olfactory bulb, the hippocampus, and Purkinje cells in the
cerebellum (Sato-Yoshitake et al., 1989 ; Schoenfeld et al., 1989 ).
Although the precise function of MAP1B remains unclear, the phenotype
of MAP1B knock-out mice suggests a role in neuronal
differentiation (Edelmann et al., 1996 ; Takei et al., 1997 ;
Gonzalez-Billault et al., 2000 ). This view is confirmed by antisense
experiments showing that MAP1B downregulation in PC12 cells
or cultured cerebellum macro-neurons reduces neurite outgrowth (Brugg
et al., 1993 ; DiTella et al., 1996 ).
In conclusion, this report adds MAP1B to the list of
established cytoskeleton genes that interact with one or several
homeogenes. This list contains 3-tubulin (Serrano et al.,
1997 ), centrosomin (Li and Kaufman, 1996 ), MAP2
(Ding et al., 1997 ), calponin (Morgan et al., 1999 ),
NF68 (Biagioni et al., 2000 ), and BPAG1 (Mainguy et al., 1999 , 2000 ). The fact that homeoprotein transcription factors
regulate the expression of several components of the cytoskeleton, and
probably of adhesion molecules (Edelman and Jones, 1993 ), provides a
molecular basis for their well established functions in tissue and cell
morphogenesis (Joliot et al., 1991 ; Bloch-Gallego et al., 1993 ; Le Roux
et al., 1993 ).
 |
FOOTNOTES |
Received Dec. 21, 2000; revised Feb. 27, 2001; accepted Feb. 28, 2001.
This work was supported by the European Community Biotechnology
program (BIOT980227) and by the Association Française de lutte
contre les Myopathies. M.L.M. is an European Molecular Biology Organization and Fondation pour la Recherche Medicale fellow. We
thank E. Ipendey and S. Dupas for excellent technical assistance and
Dr. S. Saule for providing us with polyclonal anti-Engrailed antibody.
We also thank Drs. C. Goridis and M. Wassef for their critical reading
of this manuscript, as well as Drs. F. Nothias, B. Lesaffre, and A. Trembleau for helpful discussions.
Correspondence should be addressed to Dr. Alain Prochiantz, Unité
Mixte de Recherche 8542, Ecole Normale Supérieure, 46 rue
d'Ulm, 75230 Paris, Cedex 05 France. E-mail:
prochian{at}wotan.ens.fr.
Dr. Conradt's present address: MEMOREC Stoffel GmbH, Stoeckheimer Weg
1, 50829 Cologne, Germany.
 |
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