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The Journal of Neuroscience, March 1, 2002, 22(5):1629-1639
Evidence for a Centrally Located Gate in the Pore of a
Serotonin-Gated Ion Channel
Sandip
Panicker2, *,
Hans
Cruz1, *,
Christine
Arrabit1, and
Paul A.
Slesinger1, 2
1 The Salk Institute for Biological Studies, La Jolla,
California 92037, and 2 Neurosciences Graduate Program,
University of California, San Diego, La Jolla, California 92093
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ABSTRACT |
Serotonin-gated ion channels (5-HT3) are members
of the ligand-gated channel family, which includes channels that are
opened directly by the neurotransmitter acetylcholine, GABA, glycine, or glutamate. Although there is general agreement that the second transmembrane domain (M2) lines the pore, the position of the gate in
the M2 is less certain. Here, we used substituted cysteine accessibility method (SCAM) to provide new evidence for a centrally located gate that moves during channel activation. In the closed state,
three cysteine substitutions, located on the extracellular side of M2,
were modified by methanethiosulfonate (MTS) reagents. In contrast, 13 cysteine substitutions were modified in the open state with MTS
reagents. The pattern of inhibition (every three to four substitutions)
was consistent with an helical structure for the middle and
cytoplasmic segments of the M2 transmembrane domain. Unexpectedly,
open-state modification of two amino acids in the center of M2 with
three different MTS reagents prevented channels from fully closing in
the absence of neurotransmitter. Our results are consistent with a
model in which the central region of the M2 transmembrane domain is
inaccessible in the closed state and moves during channel activation.
Key words:
5-HT3R; substituted cysteine accessibility
method; serotonin; gating; ligand-gated ion channel; ion channel
structure; ionotropic receptor
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INTRODUCTION |
5-HT3 channels
are nonselective, cationic ion channels that are activated directly by
serotonin. They are expressed in the enteric nervous system, the spinal
cord, and various regions of the brain, including the hippocampus,
striatum, neocortex, amygdala, and raphe nucleus (Tecott et al., 1993 ).
Activation of 5-HT3 receptors leads to membrane
depolarization and Ca2+ influx (MacDermott
et al., 1999 ). 5-HT3 channels have been
implicated in some forms of long-term potentiation (Alhaider et al.,
1991 ; Maeda et al., 1994 ; Alkadhi et al., 1996 ), antinociception
(Khasabov et al., 1999 ), and emesis (Perez, 1999 ). They exist as a
homopentamer of the 5-HT3a subunit or as a
heteropentamer of 5-HT3a and
5-HT3b subunits in native tissue and cell lines
(Maricq et al., 1991 ; Hussy et al., 1994 ; Davies et al., 1999 ; Dubin et
al., 1999 ).
5-HT3 channels are members of a superfamily of
ligand-gated ion channels in which the extracellular N-terminal domain
encodes the entire ligand-binding site. The second putative
transmembrane domain, M2, lines part of the channel pore and is
involved in determining ion selectivity (see Fig. 1) (Corringer et al.,
2000 ). The mechanism by which the binding of neurotransmitter leads to channel opening is not known. One structural component in this transduction process is the gate of the channel, the region that prevents the flow of ions in the absence of neurotransmitter and presumably moves during ligand activation.
The location of the gate in the nicotinic acetylcholine-gated receptor
(nAChR) has been equivocal. In one set of studies, the location of the
gate was inferred using the substituted cysteine accessibility method
(SCAM) (Akabas et al., 1994 ; Wilson and Karlin, 1998 ; Wilson and
Karlin, 2001 ). In SCAM, each amino acid in a domain (e.g., M2) is
changed to cysteine one at a time, and each cysteine mutant is then
examined for accessibility to cysteine modifying reagents
[methanethiosulfonate (MTS)] using electrophysiological methods.
Using this approach, Akabas et al. (1994) proposed that the gate and
the narrowest region of the nAChR pore are located on the cytoplasmic
end of the M2 transmembrane domain, between the 2'G and 2'T [this
nomenclature allows the comparison of homologous amino acids in the M2
transmembrane domain from different types of neurotransmitter-gated ion
channels (refer to Fig. 1A)]. Mutagenesis studies of
a conserved leucine (9'L), on the other hand, implicated the middle of
the M2 transmembrane domain in the gating of nAChR. Mutating the 9'L
dramatically changed the EC50 for activation (Filatov and White, 1995 ; Labarca et al., 1995 ), increased spontaneous channel activity (Bertrand et al., 1997 ), and permitted inappropriate activation by antagonists (Palma et al., 1996 , 1999 ). Moreover, structural data derived from high-voltage electron microscopy (4.6-9
Å resolution) of nAChR channels in the closed and open states
suggested that the gate in a closed channel is situated in the center
of the M2, near the 9'L implicated previously in gating (Unwin, 1995 ;
Miyazawa et al., 1999 ). To learn more about the secondary structure and
gating of neurotransmitter-activated ion channels, we performed a SCAM
analysis of the M2 transmembrane domain in 5-HT3a channels.
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MATERIALS AND METHODS |
Molecular biology. Mouse 5-HT3a
cDNA (M74425; kindly provided by Dr. Julius, UCSF, San Francisco,
CA) was subcloned into pGEMHE for high expression in
Xenopus oocytes (Maricq et al., 1991 ). Sequencing of the
mouse 5-HT3a revealed three differences from the
published sequence (E31 is A31+R32; A304). Cysteine mutants were
created by overlap PCR or whole-plasmid PCR. The numbering nomenclature
for the mutants refers to the amino acid number in the corrected
full-length sequence of 5-HT3a. All PCR-generated products were subjected to DNA sequencing (Salk Sequencing Facility) for potential errors generated by Taq polymerase. In
vitro methyl-capped cRNA was made from linearized cDNA and T7 RNA
polymerase (Stratagene, La Jolla, CA). The concentration and
quality of cRNA were assessed using an ethidium-stained formaldehyde
gel and RNA molecular weight marker. Xenopus oocytes were
isolated as described previously (Slesinger et al., 1996 ). Stage V/VI
oocytes were injected with a 46 nl solution containing 0.1-10 ng of
channel cRNA. Oocytes were incubated in 96 mM
NaCl, 2 mM KCl, 1 mM
CaCl2, 1 mM
MgCl2, and 5 mM HEPES, pH
7.6 with NaOH, for 1-7 d at 16°C.
Electrophysiology. Macroscopic currents were recorded from
oocytes with a two-electrode voltage-clamp amplifier (Geneclamp 500;
Axon Instruments, Union City, CA), filtered at 0.05-2 kHz, digitized
(0.1-2 kHz) with a Digidata 1200 analog-to-digital interface (Axon Instruments), and stored on a laboratory computer. Electrodes were filled with 3 M KCl and had resistances of
0.4-2 M . Oocytes were perfused continuously with a solution
containing 86 mM NaCl (Sigma-Aldrich, St. Louis,
MO), 2 mM KCl, 4.7 mM
MgCl2 (free Mg2+ of
3.3 mM), 0.5 mM EGTA, and 5 mM HEPES, pH 7.5 with ~5
mM NaOH. For experiments with zero divalents,
MgCl2 was omitted. Programmable pinch valves
(Warner Instruments, Hamden, CT) were used to change the extracellular
solution flowing through a small chamber (0.3175 × 1.524 cm). The
extracellular solution was connected to ground via a 3 M KCl agarose bridge. Because of
instability of MTS (Toronto Research Chemicals, North York, Ontario,
Canada), MTSET
[(2-(trimethylammonium) ethyl)-methanethiosulfonate], MTSEA
(2-aminoethyl-methanethiosulfonate-bromide), and MTSES [sodium
(2-sulfonatoethyl)-methanethiosulfonate] stocks were made on the
day of the experiment, stored on ice, and diluted immediately before
perfusion. For experiments with DTT, 50 mM DTT
was prepared in 0.5× of the extracellular solution to minimize osmotic
shock. MDL-72222 (Tocris, Ballwin, MO) stock of 10 mM was diluted (1 µM)
just before use. For MDL-72222 experiments, we compared the change in
5-HT-induced current after exposure to MDL-72222 (control) with that of
MDL-72222 plus MTS, after 10 min of wash to allow for sufficient
removal of MDL-72222.
The majority of cysteine-substituted mutants expressed in oocytes
yielded small (<300 nA) agonist-independent currents and 5-HT-induced
currents between 0.5 and 15 µA. L286C, G288C, Y289C, and F292C were
coinjected with wild-type 5-HT3a cRNA (e.g.,
F292Cwt) in ~1:1 ratio because injection
of the mutant cRNA alone resulted in little or no 5-HT-induced
currents. Injection of the cRNA for I295C sometimes gave rise to larger
agonist-independent currents and/or unstable agonist-independent
currents. Only recordings that were stable and displayed reproducible
5-HT-induced currents were included in the analyses.
Analysis. The dose-response curve for 5-HT was determined
by recording the current (voltage clamped at 80 mV) elicited by different concentrations of 5-HT. The 5-HT-induced current for each
concentration was divided by the maximal 5-HT-induced current (I/Io) and plotted as a
function of [5-HT]. The induced current, I, was the peak
current measured with 5-HT current minus the initial agonist-independent current. The data collected from each oocyte was
fit with the Hill equation
I/Io = 1/(1 + (EC50/[X]) h),
where the EC50 is the concentration at which
there is half-activation, and h is the Hill coefficient. The
deactivation time (T50) was determined
by measuring the time taken for the current to decrease to 50% of its
level before removing the 5-HT.
The irreversible effect of MTS on 5-HT-induced currents was examined
using one of two protocols. Protocol 1 consisted of two 5-10
sec pulses of 10 µM 5-HT
(I1,
I2), 2-3 min of wash, 1 min of MTS (1 mM) reagent in the absence or presence of 10 µM 5-HT, 3.5 min of wash, and two 5-10 sec
pulses of 5-HT (I3,
I4). The percentage
inhibition-potentiation was calculated using the equation (I4/I2 1) * 100. For measuring the Mg2+
inhibition, an additional 15-20 sec 5-HT pulse in 0 mM Mg2+ was applied
between the two 5-10 sec 5-HT pulses.
Mg2+-dependent inhibition was calculated
using the equation (1 I1/IMg(0)) * 100. Protocol 2 was used to measure the rate of modification: a 5-10
sec pulse of 10 µM 5-HT
(I0), 1-2 min of wash, a 5-10 sec pulse of MTS (0.04-2 mM) reagent in the absence
or presence of 10 µM 5-HT, and a 1-2 min wash
(times varied for different mutants to allow recovery from
desensitization). The cycle was repeated until complete modification
occurred (I1 In). The 5-HT-induced current
(I0 In) was plotted as a function of
cumulative exposure time to MTS. To account for the decrease in the
current attributable to desensitization for V291C, several pulses of 10 µM 5-HT were delivered first before starting
the rate experiment. The rate of modification for
G288Cwt was not measured. The data from
each oocyte were fit with a single exponential: y = y0 + ae t/ for
potentiation or y = y0 + a(1 e t/ ) for inhibition.
The bimolecular rate constant equals 1/( * [MTS]). The change in
agonist-independent current was quantified by taking the difference
between the basal current just before I3 (after the 3.5 min wash) and the
initial basal current (after I2) and
then dividing by I3 (this represents
the total amount of current that can pass through modified channels in
the open state).
All values were reported as mean ± SEM. Data were analyzed for
statistical significance (SigmaStat 2.0; SPSS, Chicago, IL) using one-way ANOVA, followed by Bonferroni's post hoc test
with wild-type as control or using a paired t test for
Mg2+-dependent inhibition. Values of
p < 0.05 were considered significant.
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RESULTS |
Effect of cysteine substitutions on 5-HT3a
Neurotransmitter stimulation of ligand-gated channels produces a
mixed population of closed, open, and desensitized states. For example,
in the presence of a saturating dose of 5-HT (10 µM),
5-HT3a channels opened rapidly and then quickly
entered a nonconducting, desensitized state (Fig.
1B). Wilson et al.
(2001) demonstrated recently that the pattern of MTS reactivity in
desensitized nAChR channels differs from that of channels in the open
or closed state. To minimize the contribution of the desensitized
state, we recorded 5-HT-induced currents in the absence of
extracellular Ca2+ (Fig.
1B), which dramatically slowed the rate of
desensitization (Yakel et al., 1993 ).

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Figure 1.
Properties of wild-type and cysteine-substituted
5-HT3a channels expressed in Xenopus
oocytes. A, Alignment of the M2 transmembrane domain
sequences from mouse 5HT3a (M74425), mouse
5-HT3b (AF155045), mouse nAChR 7 (P49582), and mouse
nAChR 1 (M17640) subunits. "C" indicates cysteine substitutions.
Bold delimits two possible positions for the gate in
nAChR, 2'G through 2'T (Akabas et al., 1994 ; Wilson and Karlin, 1998 )
and 9'L (Unwin, 1995 ). The proposed membrane topology is shown below.
B, Removal of extracellular Ca2+
slowed the rate of desensitization with 5-HT (10 µM).
Dashed line indicates zero current level. All currents
were recorded at 80 mV. C, Exposure of wild-type
5-HT3a channels to 1 mM MTSET in the closed or
open (+10 µM 5-HT) state did not irreversibly change
5-HT-induced current. D, Continuous current recording
from oocyte expressing V296C shows the direct activation with 1 mM MTSET. Bar graph shows the agonist activity
(MTSET-induced current divided by the 5-HT-induced current) of 1 mM MTSET for S290C, V291C, I295C, and V296C (striped
bar). The 5-HT3a antagonist MDL-72222 (1 µM; MDL) suppressed the agonist activity of MTSET
(black bar) and MTSEA (data not shown). For I295C, MDL-72222
plus MTSET decreased the inward current, giving rise to a negative
percentage of 5-HT-induced current.
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To localize the position of the gate in 5-HT3a,
we examined the accessibility of cysteine substitutions in the M2
domain of open and closed mutant channels. If treatment with MTS leads
to an irreversible reduction in the amplitude of agonist-induced current, then the cysteine side chain is likely positioned in or near
the pore of the channel. If a cysteine-substituted channel is modified
equally well in the open and closed states with extracellularly applied
MTS reagents, then the channel gate is located on the cytoplasmic side
of the engineered cysteine.
We first examined the effect of 1 mM MTSET (extracellular)
on the 5-HT-induced current through wild-type channels (Fig.
1C). Wild-type 5-HT3a channels exposed
to MTSET in either the closed or open state showed no decrement in
5-HT-induced current. We therefore used the wild-type
5-HT3a channel for the introduction of new
cysteine substitutions and assumed that the eight native cysteines
remained silent. Twenty-three amino acids in the M2 transmembrane
domain (D274-V296) were systematically replaced with a cysteine (one
at a time) (Fig. 1A). Nineteen
5-HT3a cysteine mutants gave rise to measurable
5-HT-induced currents after injection of the cRNA into
Xenopus oocytes. In contrast to our results with S290C,
Reeves et al. (2001) reported that 5-HT3a
channels containing the S290C substitution failed to express in
Xenopus oocytes. It is possible that differences in the
noncoding region or the use of a splice variant (short vs long
5-HT3a) allowed S290C to express in our study.
Four mutants that gave little or no 5-HT-induced currents were studied
by coinjecting the mutant cRNA with wild-type cRNA in ~1:1 ratio
(L286Cwt,
G288Cwt,
Y289Cwt, and
F292Cwt). Although it is probable that a
small percentage of current came from wild-type channels, currents
recorded from coinjected eggs had properties (e.g.,
Mg2+-dependent inhibition and
deactivation) unique from those of wild-type, indicating coassembly of
both wild-type and mutant subunits (Table 1).
To assess whether the cysteine mutation grossly altered the channel
structure, we compared the dose-response curves
(EC50) for serotonin activation of the
cysteine-substituted mutants that formed homomultimers. The
EC50 changed less than twofold for 13 cysteine
substitutions and twofold to eightfold for the remaining six cysteine
substitutions. The largest shifts in EC50
occurred with cysteine substitutions near the extracellular half of the M2 transmembrane domain. These changes in EC50
are relatively small considering that each homopentamer contained five
cysteine mutations. For comparison, some single cysteine mutations in
two of five nAChR subunits produced 50-fold changes in the
EC50 (Akabas et al., 1994 ). The Hill coefficient
for 5-HT3 mutants varied from 1.2 to 3.3 compared
with ~2 for wild-type channels (Table 1). The change in Hill
coefficient suggests that the cooperativity between agonist binding and
channel activation changed with the mutation, although this was not
investigated further. Some mutations were also directly activated by
MTS reagents (Fig. 1D). A shift in the
EC50 and/or inappropriate activation by a ligand
(e.g., MTSET and MTSEA) are not unexpected outcomes for point mutations in an allosteric protein. Mutations in nAChR have been reported to
convert antagonists to agonists and shift the
EC50 for ACh activation (Labarca et al., 1995 ;
Palma et al., 1996 , 1999 ). Although mutations in the channel protein
can alter its function, the general mechanism governing channel
activation appears to be preserved in the majority of these mutants.
Overall, the small shift in EC50 for the majority
of 5-HT3a mutant channels suggests that large
structural changes were minimal in 5-HT3a mutant
channels (Table 1).
State-dependent MTS modification of 5-HT3a mutants
We first examined the MTS sensitivity of all
5-HT3a cysteine mutant channels with MTSET in
either the absence (closed state) or presence (open state) of 10 µM 5-HT (this dose was 4.5-45 times the
EC50). We chose MTSET because it has a permanent
positive charge and is not membrane permeant (Holmgren et al., 1996 ).
In the closed state, MTSET (1 mM) treatment for 1 min
produced no irreversible change in the 5-HT-induced current for 19 cysteine mutants (Fig.
2B). Four mutants,
S290C, V291C, I295C, and V296C, however, appeared to be directly opened
by MTSET in the absence of 5-HT (Fig. 1D). To study
these channels in their closed state, we coapplied the
5-HT3 antagonist MDL-72222 (Maricq et al., 1991 ), which was found to inhibit the MTSET-activated current (Fig.
1D). In the presence of MDL-72222 (1 µM; ~300 times the
IC50), MTSET treatment did not
irreversibly alter the amplitude of the 5-HT-induced current for S290C,
V291C, and V296C mutants. For I295C, however, MTSET treatment in the
presence of MDL-72222 irreversibly potentiated the 5-HT-induced
current, although there was no detectable direct activation with MTSET.
Thus, only I295C appears to be modified with MTSET in the closed
state.

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Figure 2.
Reactivity of cysteine-substituted
5-HT3a channels in open and closed states with MTSET.
A, Continuous current recorded from oocyte injected with
cRNA for wild-type, I295C, S290C, S280C, or R278C. Solid
bar indicates 10 µM 5-HT, hatched
bar indicates 1 mM MTSET, and + and refers
to extracellular solution with (+) or without ( )
Mg2+. MTSET exposure irreversibly inhibited the
5-HT-induced current for S290C and S280C. The 5-HT-induced current for
R278C increased in the +Mg2+ but not the
Mg2+ solution after MTSET treatment. I295C
appeared to have slower deactivation kinetics after MTSET treatment
(see Table 1). B, Summary of the percentage inhibition
or potentiation after 1 min exposure to MTSET in either the closed
(open bars) or open (solid bars) states
(n = 4-17). L286Cwt,
G288Cwt, Y289Cwt, and
F292Cwt designate coexpression with wild-type
5-HT3a. MTSET was coapplied with 1 µM
MDL-72222 to study closed-state inhibition for S290C, V291C, I295C, and
V296C (MDL). The 5-HT-induced current was adjusted for
desensitization for S290C (~12%), V291C (~16%), I294C (~8%),
and I295C (~6%) that occurred after 1 min of 5-HT stimulation alone.
*p < 0.05 indicates statistical difference from
wild-type channels using one-way ANOVA.
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The accessibility of cysteine mutants in the open state, on the other
hand, was strikingly different from that of closed channels. MTSET
irreversibly reduced the 5-HT-induced current by 40-80% of control
for six cysteine 5-HT3a mutants and potentiated
the 5-HT-induced current for four mutants (Fig.
2A,B). Although G276C and V296C
fell out of statistical significance using one-way ANOVA, they both
appeared to be inhibited after MTSET treatment in the open state. Our
results with MTSET are similar but not identical to those of Reeves et
al. (2001) , who recently used SCAM to study 5-HT3a in the open state. The use of a splice
variant in their study might explain some of the differences. In
addition, we accounted for a reduction in current caused by
desensitization and an apparent potentiation caused by a change in
Mg2+-dependent inhibition. Our results
show that, of the mutants modified in the open state with MTSET, only
I295C was modified in both closed and open states. These results
suggest that 5-HT3a channels possess a gate on
the extracellular side of the M2 transmembrane domain. Alternatively,
the extracellular portion of 5-HT3a might be too
narrow for MTSET to modify exposed cysteines in the closed state.
To test this idea, we studied the effect of MTSEA, which is
smaller than MTSET [3.6 vs 5.8 Å for the head group (see Fig. 5)],
on cysteine substitutions L286C through V296C. In the closed state,
V296C and L293C were both modified by 1 mM MTSEA (Fig. 3A,C).
Interestingly, MTSEA treatment increased the 5-HT-induced current by
350% for L293C in the closed state, whereas MTSET had little effect
(Fig. 3A,C). Although L287C
exhibited some potentiation of 5-HT-induced current with
MTSEA treatment in the closed state, this increase was not
statistically significant. In the open state, MTSEA treatment modified
six cysteine substitutions [G288Cwt,
S290C, V291C, F292Cwt, L293C, and V296C
(Fig. 3C)]. Of these, F292Cwt
and L293C were not significantly modified with MTSET, suggesting that
they lie within a region of the channel that is too small for MTSET to
access but large enough for MTSEA to enter. Additionally, MTSET
modification of residues S290C and V291C inhibited 5-HT-induced current, whereas modification with MTSEA did not. One possibility is
that the pore is relatively wide at this level in the channel, and
attachment of a smaller MTS moiety, such as MTSEA, may have negligible effects on current flow. Combining the results from experiments with MTSEA and MTSET, we conclude that amino acids L293
through V296 are accessible in the closed and open state, suggesting
that the gate is on the cytoplasmic side of L293.

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Figure 3.
Reactivity of cysteine-substituted
5-HT3a channels in open and closed states with MTSEA.
A, B, Continuous current recorded from
oocyte injected with the cRNA for L293C or G288Cwt.
The 5-HT-induced current through L293C was potentiated with MTSEA (1 mM) in the closed and open states.
G288Cwt was modified only in the open state.
C, Summary of the percentage of inhibition or
potentiation of current for mutants L286Cwt through
V296C after 1 min exposure to MTSEA (1 mM) in the closed
(open bars) or open (solid bars) states
(n = 4-10). V296C and L293C were modified in both
the closed and open states. The inhibition or potentiation for S290C,
V291C, I294C, I295C, and V296C were adjusted as described in Figure 2.
*p < 0.05 indicates statistical difference from
wild-type channels using one-way ANOVA.
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To quantitate the difference in accessibility of cysteines in the open
and closed states, we measured the bimolecular rate constant for MTS
modification (Fig. 4). We used a protocol
in which the MTS reagent was applied repeatedly in the absence or presence of 5-HT for 5-10 sec (see legend of Fig. 4). The rates of
closed-state modification were not measured for E277C, R278C, S280C,
T284C, G288Cwt,
F292Cwt, and I294C because 1 mM MTS treatment did not significantly affect the
5-HT-induced current (Fig. 2B). The rate of
modification for S290C, V291C, L293C, I295C, and V296C in the closed
state was <50 M/sec. However, the rates for
S290C, V291C, I295C, and V296C are overestimates because these mutants
were directly opened by MTSET (Figs. 1D,
4C, a) (MDL-72222 washed out too slowly for using in rate measurements). Because there was no significant modification of
S290C and V291C when MTS was coapplied with MDL-72222 (Fig. 2B), the actual rate of modification in the closed
state was likely <10 M/sec (Fig. 4C,
dotted lines). In contrast to the closed state, the rate of
modification for open channels varied from ~500 to ~5000
M/sec, with a majority of the faster rates
occurring on the cytoplasmic side of M2 transmembrane domain. For
comparison, these rate constants are comparable with those reported for
modification of nAChR channels (Pascual and Karlin, 1998 ). Together,
the rate of modification increased 100- to 1000-fold during activation for cysteine substitutions on the cytoplasmic side of F292C and increased only onefold to 10-fold for cysteine substitutions on the
extracellular side of F292C. This difference in state dependence of
modification is consistent with data collected by steady-state modification (Figs. 2, 3), supporting the conclusion that the amino
acids on the cytoplasmic side of L293C are primarily
inaccessible in the closed state and become readily available for
modification in the open state (see Fig. 7B).

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Figure 4.
Rate constants for gated access to cysteine
substitutions in the M2 transmembrane domain of 5-HT3a.
A-C, Determination of the rate constant for
modification with MTSET or MTSEA. A, Continuous current
recorded from oocyte injected with the cRNA for E277C. Alternating
pulses of 5-HT alone and 5-HT with MTSET (0.1 mM) were
delivered. B, The amplitude of 5-HT-induced current was
plotted as a function of cumulative exposure time to MTSET and fit with
a single exponential having a time constant of 3.8 sec.
C, Average rate constants for modification with MTSET
(white circles, black
circles) or MTSEA (circles
with horizontal stripes, circles
with diagonal stripes) in the closed and open states,
respectively (n = 4-6). Circles with
crosses indicate that closed-channel modification was not
statistically different from wild type and was likely 10
M/sec (see Fig. 2B). Note that closed
rates are overestimates for those mutants in which MTSET opened the
channel directly, denoted by a. Dashed
line for S290C and V291C indicates there was no detectable
effect of MTSET or MTSEA when coapplied with MDL-72222.
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We next searched for patterns of inhibition or potentiation with MTS
reagents in the open state. In an helix, amino acids that align
along one face of the helix are spaced three to four amino acids apart.
This pattern is readily seen in a helical wheel plot (see Fig.
7A). Except for V296C, all of the cysteine substitutions that were inhibited by MTS reagents cluster on one side of the helix
(see Fig. 7A, ). Interestingly, those cysteine
substitutions that were potentiated by MTS cluster on the opposite side
of the helix (see Fig. 7A, ). If we define pore-facing
amino acids as those that were irreversibly inhibited with MTS
reagents, then the M2 transmembrane domain appears to be helical,
with hydrophilic amino acids on the cytoplasmic side and hydrophobic
residues on the extracellular side of the M2 transmembrane domain.
Could the introduction of the cysteine in the mutant increase the MTS
reactivity of one or more of the native cysteines? To test this idea,
the S280C mutation was generated in the background of a
5HT3a subunit in which two native cysteines
positioned close to the M2 transmembrane domain, C270 (in M1) and C316
(in M3), were mutated to alanine. In this triple mutant, MTSET
irreversibly reduced the 5-HT-induced current by ~70%, similar to
the reduction observed with S280C alone. Removing all of the native
cysteines in 5-HT3a is impractical, because a
canonical pair of cysteines is located in the ligand-binding domain of
most ligand-gated channels and is essential for function (Corringer et
al., 2000 ). Although we have not studied all mutants in the C270A/C316A
background, it appears unlikely that native cysteines contributed to
the MTS effects reported here.
MTS-dependent potentiation of 5-HT-induced current
The potentiation of 5-HT-induced current with MTSET or
MTSEA for six cysteine substitutions (S275C, R278C,
G288Cwt,
F292Cwt, L293C, and I295C) was unexpected.
We anticipated that covalent attachment of a positively charged moiety
to a cysteine in the channel would reduce the 5-HT-induced current,
because 5-HT3a is a cationic channel. One
possible explanation for potentiation of current is that the MTS
treatment shifted the EC50 to lower concentrations of 5-HT. This possibility was unlikely because a maximal
dose of 5-HT (10 µM) was used to activate wild-type and
mutant channels. Alternatively, MTSET modification might have altered
divalent inhibition; 5-HT3 channels are inhibited
by extracellular divalent cations (Lovinger, 1991 ; Maricq et al.,
1991 ). To explore this possibility, we quantified the inhibition
produced by extracellular Mg2+ before and
after exposure to MTSET. For S275C and R278C, the Mg2+-dependent inhibition decreased after
modification with MTSET, which led to an apparent potentiation of
5-HT-induced current when recorded in the
Mg2+-containing solution. In contrast, the
current flowing through these channels while in the
Mg2+-free solution was not changed after
modification (Fig. 2A, R278C; Table
1).
A change in Mg2+-dependent inhibition, on
the other hand, did not appear to explain the potentiation of
5-HT-induced current for G288Cwt,
F292Cwt, L293C, and I295C mutants (Table
1). An alternative explanation is that MTS modification increased the
single-channel conductance or open-channel probability, which would
produce a potentiation of 5-HT-induced current. The small conductance
of wild-type 5-HT3a channels (<1 pS), however,
precluded measuring the mean open-channel lifetime or conductance
directly (Hussy et al., 1994 ). We measured the deactivation time
(T50) of the channel, which is the
time taken for channels to close after removing 5-HT. The
T50 depends on the single-channel open
and closed lifetime, as well as the off rate of 5-HT from the
ligand-binding site (Wang et al., 1999 ). The deactivation times for
G288Cwt,
F292Cwt, and I295C mutants were
approximately two to three times slower after modification with MTSET
(Table 1). For comparison, MTSET treatment of wild-type, E277C, S280C,
or V291C channels produced no significant change in the deactivation
rate (Table 1). The deactivation time for L293C, however, was slightly
faster after MTSEA treatment, suggesting that the single-channel
conductance increased after modification of this cysteine mutant.
Although we do not fully understand the underlying mechanism of
potentiation, the results demonstrate that cysteines substitutions at
S275, R278, G288, F292, L293, and I295 are accessible to MTS reagents in the open state. Interestingly, cysteine mutants that give rise to
potentiation during MTS modification cluster on one side of the helix,
whereas those that are inhibited cluster on the opposite side, thought
to face the pore (see Fig. 7A).
Middle of M2 transmembrane domain implicated in
conformational change
Surprisingly, MTSET treatment of four cysteine mutants (L287C,
S290C, V291C, and I295C) in the open state increased the basal current,
which persisted in the absence of 5-HT ("agonist-independent current") (Figs. 2A,
5). The amplitude of this
agonist-independent current increased to 15-50% of the modified
5-HT-induced current, which reflects the total amount of current that
can flow through the modified channels (Fig.
6). For comparison, MTS modification of a
cysteine-substituted voltage-gated K+
channel also produced constitutively open channels (Liu et al., 1997 ).
We tested whether this change depended on the type of MTS reagent.
MTSEA (1 mM) and MTSES (1 mM) did not induce an agonist-independent current
for I295C and L287C. In contrast, both MTSEA and MTSES increased the
agonist-independent current for S290C and V291C in the open state
(Figs. 5, 6). For S290C and V291C, MTSES administered in the closed
state did not give rise to an agonist-independent current (data not
shown), consistent with our previous conclusion that these two sites
are inaccessible in the closed state. Thus, regardless of the charge or
size of the MTS reagent, MTS treatment in only the open state produced
a large, agonist-independent current for S290C and V291C.

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Figure 5.
MTS modification in the open state produces
agonist-independent currents for cysteine substitutions in the middle
of the M2 transmembrane domain. Continuous current recorded from oocyte
injected with the cRNA for V291C (A), S290C
(B), or L287C (C). One
minute exposure to MTS reagent (1 mM) in the presence of
5-HT (10 µM) produced an agonist-independent current for
L287C, S290C, V291C, and I295C (data not shown) with MTSET and for
S290C and V291C with MTSEA and MTSES. The structure of MTS moiety that
would covalently attach to the cysteine sulfhydryl is shown above.
D, Continuous current recorded from oocyte injected with
cRNA for V291C. In the absence of 5-HT, 50 mM DTT decreased
the agonist-independent current to the level before MTSET modification.
Note that 5-HT (10 µM) fully activated the V291C channel
after DTT treatment.
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Figure 6.
Summary of the change in agonist-independent
current produced by MTSET, MTSEA, and MTSES. Bar graphs show the
average amplitude of agonist-independent current after MTS treatment,
expressed as a percentage of the 5-HT-induced current after MTS
modification (see Materials and Methods) (n = 3-13). $ indicates that the pre-modified 5-HT-induced current was used
to calculate the percentage change in agonist-independent current
because MTSEA treatment eliminated >95% of the 5-HT-induced current.
* indicates statistical difference from wild type using one-way
ANOVA. nt, Not tested.
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|
One explanation for the agonist-independent current is that modified
channels become locked open after removal of 5-HT (see Fig. 8). To test
this idea, we examined the effect of DTT (50 mM) in the
absence of 5-HT. If MTSET-modified channels were locked open, then DTT
would be expected to have access to the pore and, during reduction of
the newly formed disulfide bond, enable the mutant channel to close
normally. Indeed, the agonist-independent current declined to within
~5% of the premodified level when V291C was exposed to DTT in the
absence of 5-HT (Fig. 5E). DTT treatment also restored the
agonist-independent current to within 5% of the premodified level for
L287C, S290C, and I295C channels modified with MTSET. In addition to
the recovery of agonist-independent current, the amplitude of
5-HT-induced current returned to 80-130% of the original level after
DTT treatment.
 |
DISCUSSION |
Neurotransmitter-gated ion channels are important for mediating
the response of "fast" neurotransmitters and have evolved a
transduction mechanism that tightly couples the binding of
neurotransmitter to a conformational change in the channel pore. Our
analysis of 5-HT3a channels has revealed a
cluster of amino acids in the middle of the M2 transmembrane domain
that appears to move during channel activation. In addition, our
results suggest that the middle and cytoplasmic segments of the M2
transmembrane domain are inaccessible to MTS reagents in the closed
state and, during activation with 5-HT, become readily accessible to
MTS reagents. Finally, the pattern of inhibition is consistent with an
helical structure for the M2 domain.
SCAM of the M2 in 5-HT3a and nAChR
5-HT3a and nAChR share 29% homology in the
M1-M3 transmembrane domains and likely conserve the molecular
mechanism underlying channel activation. Consistent with this idea,
replacing the N-terminal domain of 5-HT3a with
the homologous sequence from 7-nAChR produced a chimeric channel
that was activated with ACh but had pore properties of
5-HT3a (Eiselé et al., 1993 ). We therefore
expected the results of SCAM with 5-HT3a channels
to be similar to those with muscle nAChR.
The number of cysteine substitutions that were modified in the open
state with MTS reagents for both 5-HT3a and nAChR
channels is remarkably large. In our study, seven cysteine
substitutions modified in 5-HT3a overlap with
those modified in cysteine-substituted muscle nAChR channels (Akabas et
al., 1994 ; Wilson and Karlin, 1998 ). The narrowest region of the
5-HT3a pore, however, appears slightly larger
than that in nAChR, because the amino acid at the 1' position (E277C)
was inhibited in 5-HT3a with extracellular MTSET
but was inaccessible in nAChR. The inhibition of cysteine substitutions
spaced every three to four amino acids apart in 5-HT3a is consistent with an helical
structure for the middle and cytoplasmic segments of the M2
transmembrane domain (Fig. 7A). Our finding that M2 is
mostly helical in the open state is consistent with a recent SCAM
study using a splice variant of 5HT3a (Reeves et
al., 2001 ). For the nAChR, a similar pattern of MTS inhibition was
found for the M2 segment (Akabas et al., 1994 ; Pascual and Karlin,
1998 ; Wilson and Karlin, 1998 ). Moreover, ultrastructural (Unwin, 1995 ;
Miyazawa et al., 1999 ) and nuclear magnetic resonance studies
(Opella et al., 1999 ) also suggested that the M2 is helical.
Whether the middle of the helix is kinked (Unwin, 1995 ) or extended
(Akabas et al., 1994 ) in the open state is unclear from our studies. On
the extracellular side of M2 (S290-V296), however, we found several
cysteine substitutions in a row that were modified in the open state,
suggesting that either the helix unwinds at this point or it is
positioned in a crevice, in which multiple sides of the helix are
accessible (Fig. 7B). Recently, this type of water-filled
crevice surrounding a transmembrane helix was reported for a
voltage-gated K+ channel (Starace and
Bezanilla, 2001 ).

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Figure 7.
A, Helical wheel representation of
the MTS-dependent changes in current. Note the majority of cysteine
substitutions that are inhibited with MTS reagents (bold
and italicized, ) fall along the same side of the
helix, as do those that are potentiated ( ). Mutants that are locked
open are boxed; mutants modified by MTSEA have an
asterisk. B, Schematic model shows the
extent of the gate in 5-HT3a, which is intracellular
to L293. For clarity, only two of five subunits are shown with the M2
transmembrane domain. The M2 is modeled as a straight helix in an
open channel (the structure of M2 in the closed state is unknown). To
explain the MTS accessibility of four cysteine substitutions located on
the extracellular side of F292, the helix is postulated to be water
accessible on more than one face of the helix. The dashed
area indicates that these cysteine substitutions (see Figs.
2B, 3C) are accessible in the open
but not closed state, suggesting that the gate extends from F292 to a
more intracellular residue whose position can be determined by
application of intracellular MTS. In the open state, the modification
of cysteine substitutions leading to an inhibition of current are shown
(black circles). L287C (9') (white
circle) was implicated previously in gating of nAChR. The
narrowest region of the pore in nAChR is between E277 and S280
(Corringer et al., 2000 ).
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|
In contrast to the open state, the accessibility of cysteine
substitutions in the closed state appeared to be very different between
nAChR and 5-HT3a. With cysteine substitutions
S275C through F292Cwt, MTS exposure in the
closed state produced no irreversible change in 5-HT-induced current.
In contrast, MTS treatment of six cysteine-substituted nAChR channels
in the closed state inhibited ~40-70% of the acetylcholine-induced current (Akabas et al., 1994 ). In particular, 2'T in nAChR, which is
located on the cytoplasmic side of M2 transmembrane domain, was
inhibited by ~70% with extracellular MTSET (Akabas et al., 1994 ).
The homologous amino acid in 5-HT3a, S280C, was
clearly inaccessible to MTSET in the closed state, even at high MTSET concentrations (5 mM). The dissimilar pattern of
accessibility in the closed state could indicate a slightly different
structure for the closed-channel pore in 5-HT3a
and nAChR. For example, the extracellular region of the
5-HT3a pore may be smaller or display different
electrostatics. Consistent with this idea, 5-HT3a and nAChR differ in their sensitivity to extracellular
Ca2+, single-channel conductance, and
inhibition by charged local anesthetics (Maricq et al., 1991 ; Corringer
et al., 2000 ). One experimental difference between SCAM of
5HT3a and nAChR worth noting is that
5-HT3a is a homopentamer, whereas nAChR is a
heteropentamer. Thus, 5-HT3a had five cysteine
substitutions and nAChR had only two cysteine substitutions (in the
1 subunit). The larger number of cysteine substitutions in
5-HT3a, however, would be expected to increase
the probability of closed-state modification.
Working model for the gate in 5-HT3a channel
We define the "gate" as the region of the channel that
prevents the inappropriate flow of ions through the channel pore. The activator (i.e., voltage, neurotransmitter, and pH) leads to a conformational change in the protein that moves the gate and allows ions to permeate the open pore. The gate therefore serves two functions: a barrier to ion permeation and a link to the transduction machinery.
There are two important findings with SCAM of
5-HT3a that help pinpoint the location of the
gate. First, the middle and cytoplasmic segments of the M2
transmembrane domain (S275 through F292) were accessible in open but
not closed states. In contrast, three amino acids on the extracellular
side of F292 (L293C, I295C, and V296C) were accessible in both open and
closed states. Surprisingly, I294C was only modified in the open state,
whereas the more cytoplasmic L293C was modified in both open and closed
states. Similarly, residues above the putative gate were also found to
exhibit state-dependent modification in the nAChR (Akabas et al.,
1994 ). One possible explanation is that I294C is buried within a region
of the protein or "masked" by a residue in the closed state, making
it inaccessible to MTS reagents. Nonetheless, the observation that
L293C is the last residue to be modified equally well in the open and
closed states suggests that the gate is intracellular with respect to L293. It is possible that MTS reagents are sterically or
electrostatically restricted from further entry beyond this residue.
Additional experiments are necessary to determine whether smaller
cations can gain access to sites deeper within the
5-HT3a pore, as was found with cyclic
nucleotide-gated channels (Flynn and Zagotta, 2001 ).
The second finding localizing the gate, however, is that exposure of
two cysteine mutants in the middle of M2, S290C and V291C, to all three
MTS reagents generated agonist-independent currents. Notably, this
change in current occurred only when MTS was applied in the open state.
Similarly, Reeves et al. (2001) reported that MTSES modification of
V291C produced agonist-independent currents. How does MTS modification
lead to agonist-independent currents? Two models can explain this
change in gating. First, MTS attachment could sterically hinder channel
closure, thereby locking the channel in an unliganded open state (Fig.
8A, Model
1). This unliganded open state is not fully open, however, because
reapplication of 5-HT elicits more inward current. Alternatively,
covalent attachment of the bulky reaction group to the cysteine could
increase the probability of spontaneously opening, producing an
agonist-independent current (Fig. 8B, Model
2). If the MTS moiety is accessible to DTT in either the
locked-open-MTS state (Model 1) or
the modified open state (Model 2), then reduction of the
disulfide bond and the removal of MTS from the channel pore could allow
for the passage of current before the closing of the channel. The
sudden increase in amplitude of current during the initial response to
DTT in the absence of 5-HT is consistent with this conclusion (Fig.
5E). Such a response is expected for a channel in which the
rate of removing the inhibitor is faster than the rate of channel
closure. Single-channel recordings of MTS-modified channels will be
necessary to distinguish between these two models. For either model,
however, S290C and V291C appear to be important in the activation of
5-HT3a.

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Figure 8.
Two working models that explain the
agonist-independent current. In both models, 5-HT produces a rotation
of M2 transmembrane domain, thereby exposing an ionized sulfhydryl on
the cysteine (black arrow), such as at position V291
(only two cysteines are shown for clarity). MTS (black
sphere) covalently attaches to the sulfhydryl in the open state
(open). A, After removal of 5-HT, the channel
fails to close completely in Model 1 because of steric hindrance
(locked open-MTS). B, In Model 2, modified channel closes fully in the absence of 5-HT. This closed-MTS
state is unstable, however, allowing the channel to spontaneously open.
In both models, DTT can reduce the disulfide to restore the channel to
its original unmodified closed state.
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|
Together, our data are consistent with a model in which the
extracellular barrier to ion permeation exists in the middle of the M2
domain of 5-HT3a (Fig. 7B). During
ligand binding, the M2 helix likely rotates (Figs. 7, 8), as has been
proposed for the nAChR (Unwin, 1995 ). The intracellular side of the
gate of 5-HT3a is not known, however, but can be
addressed in the future by examining the state dependence of
intracellularly applied MTS reagents. With this method, Wilson et al.
(1998) determined that the intracellular region of the nAChR gate was
located near the 1' position (E277C in 5-HT3a)
(Fig. 7B). We speculate that the M2 helices are tilted in
the open state so that the narrowest region of the pore is located on
the cytoplasmic side of the channel (Corringer et al., 2000 ).
Studies on other ligand-gated channels also support a model for a
centrally located gate that includes amino acids at the 12' and 13'
positions, which are homologous to S290 and V291. First, amino acids in
the 12' and 13' positions (and 9') are extremely well conserved
(85%-100%) in cationic ligand-gated channels (Le Novere and
Changeux, 1999 ). Second, some mutations in the gate would be expected
to open channels in the absence of neurotransmitter (unliganded open
state). Indeed, mutations of the 9'L, 12'S/T, or 13'V in the M2
transmembrane domain increased the frequency of spontaneous openings or
increased the mean open time (Bertrand et al., 1997 ; Pan et al., 1997 ;
Chang and Weiss, 1998 ; Chen and Auerbach, 1998 ; Dalziel et al., 2000 ;
Dang et al., 2000 ). In another study, MTS modification of a cysteine
substitution of the 13'V in nAChR also increased the mean open
lifetimes (Zhang and Karlin, 1998 ). Finally, England et al. (1999)
showed that mutations of amino acids in the 13', 16', and 19' positions
in nAChR produced larger shifts in the EC50 than
did mutations in the 9' position.
Our conclusions concerning the structure of the M2 are inferred after a
systematic analysis of cysteine-substituted channels exposed to
extracellular MTS reagents in closed and open states. Is there good
concordance between the structure of a protein determined by SCAM and
that by x-ray crystallography? In the handful of cases in which there
is a three-dimensional structure, there appears to be good agreement.
For example, the narrowest region of the -hemolysin pore identified
with SCAM closely matches the region visualized in the
three-dimensional structure (Song et al., 1996 ; Movileanu et al.,
2001 ). For G-protein-coupled neurotransmitter receptors, the location
of the ligand-binding pocket inferred with SCAM overlaps with that
observed in the x-ray crystallographic structure of rhodopsin
(Ballesteros et al., 2001 ).
 |
FOOTNOTES |
Received Oct. 29, 2001; revised Dec. 10, 2001; accepted Dec. 18, 2001.
*
S.P. and H.C. contributed equally to this work.
This work was supported in part by the Sloan Foundation, the McKnight
Endowment for Neuroscience, and the Fritz-Burns Foundation. S.P. is a
Merck Fellow in the University of California, San Diego Neurosciences
Graduate Program. P.A.S. is a McKnight Scholar and an Alfred P. Sloan
Research Fellow. We thank D. Julius for providing the
5-HT3a cDNA, Drs. D. Berg, S. Heinemann, N. Unwin, and
members of the Slesinger lab for providing discussion and comments on this and previous versions of this manuscript.
Correspondence should be addressed to Paul A. Slesinger, Peptide
Biology Laboratory, The Salk Institute, 10010 N. Torrey Pines Road, La
Jolla, CA 92037. E-mail: slesinger{at}salk.edu.
H. Cruz's present address: University of Geneva, Department of
Biochemistry, 30, Quai Ernest-Ansermet, 1211 Geneva 4, Switzerland.
 |
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