The Journal of Neuroscience, July 16, 2003, 23(15):6327-6337
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Inhibition of Dendritic Spine Morphogenesis and Synaptic Transmission by Activity-Inducible Protein Homer1a
Carlo Sala,1
Kensuke Futai,2,4
Kenji Yamamoto,2
Paul F. Worley,5
Yasunori Hayashi,2 and
Morgan Sheng2,3
1Consiglio Nazionale delle Ricerche Institute of
Neuroscience, Cellular and Molecular Pharmacology, Department of Pharmacology,
University of Milan, 20129 Milan, Italy,
2RIKENMassachusetts Institute of Technology
Neuroscience Research Center, The Picower Center for Learning and Memory,
Department of Brain and Cognitive Science, and 3Howard
Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge,
Massachusetts 02139, 4Laboratory for Neural
Architecture, Brain Science Institute, RIKEN, Wako, Saitama 351-0198, Japan,
and 5Department of Neuroscience, The Johns Hopkins
University School of Medicine, Baltimore, Maryland 21205
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Abstract
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The postsynaptic density (PSD) proteins Shank and Homer cooperate to induce
the maturation and enlargement of dendritic spines
(Sala et al., 2001
). Homer1a
is an activity-inducible short-splice variant of Homer that lacks dimerization
capacity. Here, we show that Homer1a reduces the density and size of dendritic
spines in cultured hippocampal neurons in correlation with an inhibition of
Shank targeting to synapses. Expression of Homer1a also decreases the size of
PSD-95 clusters, the number of NMDA receptor clusters, and the level of
surface AMPA receptors, implying a negative effect on the growth of synapses.
In parallel with the morphological effects on synapses, Homer1a-expressing
neurons show diminished AMPA and NMDA receptor postsynaptic currents. All of
these outcomes required the integrity of the Ena/VASP Homology 1 domain of
Homer1a that mediates binding to the PPXXF motif in Shank and other binding
partners. Overexpression of the C-terminal region of Shank containing the
Homer binding site causes effects similar to those of Homer1a. These data
indicate that an association between Shank and the constitutively expressed
long-splice variants of Homer (e.g., Homer1b/c) is important for maintaining
dendritic-spine structure and synaptic function. Because Homer1a expression is
induced by synaptic activity, our results suggest that this splice variant of
Homer operates in a negative feedback loop to regulate the structure and
function of synapses in an activity-dependent manner.
Key words: dendritic spine; Shank; AMPA receptor; NMDA receptor; postsynaptic density; synaptic plasticity
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Introduction
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The postsynaptic density (PSD) consists of a network of interacting
proteins that anchors and links glutamate receptors (GluRs) and other
postsynaptic membrane proteins to cytoplasmic cytoskeletal elements and
signaling pathways (Kennedy,
2000
; Scannevin and Huganir,
2000
; Sheng and Pak,
2000
; Sheng and Sala,
2001
; Tomita et al.,
2001
). The Shank and Homer families of proteins are core
components of the PSD that interact directly with each other. Shank proteins
[also called ProSAP (proline-rich synapse-associated protein), somatostatin
receptor interactive protein (SSTRIP), cortBP (cortactin-binding protein),
Synamon, and Spank] have a domain organization consisting of ankyrin repeats
near the N terminal, followed by Src homology 3 domain, PSD-95/Dlg/ZO-1
homology (PDZ) domain, proline-rich region, and a Sterile Alpha Motif domain
at the C terminus (Du et al.,
1998
; Boeckers et al.,
1999
; Lim et al.,
1999
; Naisbitt et al.,
1999
; Tu et al.,
1999
; Yao et al.,
1999
; Zitzer et al.,
1999
; Sheng and Kim,
2000
). Shank is associated with the NMDA receptor
(NMDAR)PSD-95 complex by binding to the guanylate kinase-associated
protein (GKAP), and with type-I metabotropic GluRs (mGluRs) via interaction
with Homer (Naisbitt et al.,
1999
; Tu et al.,
1999
).
Homer proteins are encoded by three genes (Homer 13) and
typically consist of an N-terminal EVH1 domain followed by a coiled-coil
domain that mediates dimerization with other Homer proteins. The Ena/VASP
Homology 1 (EVH1) domain of Homer1 binds to a PPXXF motif present in Shank,
type-I mGluRs, and inositol-1,4,5-trisphosphate (IP3) receptors
(Brakeman et al., 1997
; Tu et
al., 1998
,
1999
). Through their ability
to self-associate, Homer isoforms containing the coiled-coil domain (termed
"CC-Homer") have the potential to physically and functionally link
together the mGluR, IP3 receptor, and NMDA receptor complexes
(Xiao et al., 2000
;
Fagni et al., 2002
).
Homer1a is a short-splice variant of Homer1 that contains the EVH1 domain
but lacks the coiled-coil domain; it might function as a natural dominant
negative, because it cannot dimerize. Consistent with this idea, Homer1a
overexpression attenuates mGluR-evoked intracellular calcium release, probably
by interfering with Homer-mediated coupling between type-I mGluRs and
IP3 receptors (Tu et al.,
1998
). Homer1a expression is induced at the mRNA level by synaptic
activity (Brakeman et al.,
1997
; Sato et al.,
2001
; Thomas,
2002
), but the functional significance of Homer1a with respect to
neuronal plasticity is unclear.
We showed previously that long isoforms of Homer1 that contain the
coiled-coil domain (specifically Homer1b) cooperate with Shank to induce
morphological growth and maturation of spines and synapses. The ability of
Shank to induce spine enlargement is enhanced by coexpression of Homer1b,
depends on the ability of Shank to bind Homer1b, and correlates with the
accumulation of both Shank and Homer1b in spines
(Sala et al., 2001
). We now
report that the short-splice form of Homer1a regulates spine morphology in
opposite direction to Homer1b. Homer1a reduces spine size and density and
inhibits Shank-mediated spine enlargement in correlation with impaired
targeting of Shank to synapses. In addition, Homer1a inhibits growth of
synapses and synaptic transmission. We propose that Homer1a interferes with
the interaction of Shank and constitutively expressed CC-Homer proteins,
thereby leading to structural and functional reorganization of dendritic
spines and synapses.
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Materials and Methods
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Neuron culture and COS-7 cells. Hippocampal neuron cultures were
prepared from embryonic day 18 (E18) to E19 rat hippocampi. Medium-density
neurons (150200 cells/mm 2) were prepared as described
previously (Brewer et al.,
1993
) with minor modifications. Neurons were transfected using
calcium phosphate precipitation; transfection efficiency was
1%. COS-7
cells were transfected and processed for immunoblotting as described
previously by Hsueh et al.
(1997
).
Recombinant DNA. Full-length hemagglutinin (HA)-tagged Shank1B
(Sh1B) cDNA (Sala et al.,
2001
) was used as template for the Shank constructs that were
used. N-terminal green fluorescent protein (GFP)-tagged versions of Shank1B
and Shank1B11440 were made by replacing the HA tag with a
HindIIIAscI insert coding for enhanced GFP (EGFP).
HAShank1B14401849 was prepared by PCR amplification
of an AscISalI fragment coding the 14401849
region of Shank1B (Lim et al.,
1999
) and then subcloned in-frame into a GW1-cytomegalovirus
expression vector (British Biotechnology, Oxford, UK) with a built-in
N-terminal HA tag (N-HA-GW1 vector). Myc-tagged Homer1b, Homer1a, and
Homer1aW24A were prepared as described previously
(Tu et al., 1998
;
Xiao et al., 1998
).
GFPHomer1b and Homer1a were constructed by inserting the Homer1a
or Homer1b coding sequence in GW1 with a built-in N-terminal GFP tag
(N-GFP-GW1 vector). All of the constructs were verified by sequencing and by
expression of proteins of the expected molecular weight in COS-7 cells.
Immunostaining and antibodies. For staining of intracellular
proteins, neurons were fixed in 4% paraformaldehyde and 4% sucrose at room
temperature, or in 100% methanol at -20°C for 10 min. Primary and
secondary antibodies were applied in GDB buffer (30 mM phosphate
buffer, pH 7.4, containing 0.2% gelatin, 0.5% Triton X-100, and 0.8
M NaCl). For surface staining of GluR2, neurons were incubated with
the antibody at 37°C in a CO2 incubator for 10 min, washed
extensively in PBS, and fixed in 4% paraformaldehyde and 4% sucrose at room
temperature for 10 min. Secondary antibodies were applied in GDB as described
above. The following antibodies/probes were used (source in parentheses): rat
and mouse monoclonal anti-HA antibodies (Hoffmann-La Roche, Basel,
Switzerland); mouse monoclonal anti-Myc epitope (Santa Cruz Biotechnology,
Santa Cruz, CA); Shank antibodies Shank 56/e
(Naisbitt et al., 1999
); GKAP
rabbit N1546 (Kim et al.,
1997
); PSD-95 mouse monoclonal K28/43.1 (gift from J. Trimmer,
State University of New York, Stony Brook, NY); Shank guinea pig no. 1123,
Homer rabbit 1133 [gifts from E. Kim (Korean Advanced Institute of Science and
Technology, Taejon, Korea)]; synaptophysin mouse monoclonal (Sigma, St. Louis,
MO); GluR2 N-terminal rabbit (Chemicon, Temecula, CA); NR1 mouse monoclonal
(PharMingen, San Diego, CA); FITC-, Cy3-, and Cy5-conjugated secondary
antibodies (Jackson ImmunoResearch, West Grove, PA); Texas Red-conjugated
phalloidin (Molecular Probes, Eugene, OR). Fluorescence images were acquired
using a Bio-Rad (Hercules, CA) MRC1024 confocal microscope.
Image acquisition and quantification. Confocal images were
obtained using a Zeiss (Oberkochen, Germany) 63x objective or a Nikon
(Melville, NY) 60x objective with sequential-acquisition setting at a
resolution of 1280 x 1024 pixels. Each image was a z-series
projection taken at 0.51 µm depth intervals. Transfected neurons
were chosen randomly for quantification from 5 to 10 coverslips from three to
six independent experiments for each construct. The number of neurons used for
quantification is indicated in the figure legends. Morphometric measurements
were performed using MetaMorph image analysis software (Universal Imaging
Corporation, West Chester, PA). For dendritic-spine measurements, the maximum
length and head width of each spine present on the dendrites was manually
traced and automatically measured by computer and logged into Excel
(Microsoft, Redmond, WA). The ratio of average immunofluorescence intensity
between the spine head and the dendritic shaft was measured on manually
selected spine head and dendritic-shaft areas. Cluster area and number were
measured by thresholding the cluster area in randomly selected dendrites and
automatically counted and measured by computer. Fluorescence intensity of the
staining of endogenous proteins on the dendritic shaft and cell body was
measured as mean intensity of manually selected areas on transfected and
untransfected neurons. The ratio was obtained by comparing values in
transfected cells with those in untransfected cells on the same image.
Electrophysiological recording. Organotypic hippocampal slice
cultures were prepared from postnatal 8-d-old rats as described previously
(Stoppini et al., 1991
;
Shi et al., 1999
) and
transfected at 46 d in vitro using a biolistic gene gun
(Bio-Rad) (Lo et al., 1994
)
with 1.6 µm gold particles (12.5 mg per
60 bullets) coated with cDNAs:
MycHomer1a with pEGFP-C1 (90:10 µg) or pEGFP-F (Clontech, Cambridge,
UK) (60:40 µg), HAHomer1a-W24A with pEGFP-C1 (90:10 µg) or
pEGFP-F (60:40 µg), and pEGFP-C1 alone (10 µg). pEGFP-F-containing
bullets were used for two-photon laser-scanning microscopic imaging. Bullets
coated with two cDNAs coexpressed both proteins in 100% (98 of 98) of
transfected cells when DsRed2 and GFP were cotransfected in pilot experiments.
Furthermore, in approximately one-fifth of the experiments, we confirmed the
coexpression in cotransfected cells by immunostaining with anti-Myc antibody
against MycHomer1a after the recording.
Electrophysiological recordings and two-photon laser-scanning imaging were
performed 4052 hr after biolistic transfection. The recording chamber
was perfused with artificial CSF (2426°C) containing (in
mM): 119 NaCl, 2.5 KCl, 4 CaCl2, 4 MgCl2, 26
NaHCO3, 1 NaH2PO4, 11 glucose, 0.15
picrotoxin (Sigma), and 00.01 2-chloroadenosine (ICN Biochemicals,
Costa Mesa, CA), gassed with 5% CO295% O2, at pH
7.4. 2,3-Dioxo-6-nitro-1,2,3,4-tetrahydrobenzo[f]quinoxaline-7-sulfonamide
disodium salt (NBQX) (0.01 mM; Tocris, Bristol, UK) was added in
the bath solution during experiments in which NMDAR currents were recorded.
For recording of Sr2+-induced asynchronous synaptic
current, CaCl2 was substituted with 4 mM
SrCl2. Patch recording pipettes (24 M
) were filled
with internal solutions containing (in mM): 115 cesium
methanesulfonate, 20 CsCl, 10 HEPES, 2. 5 MgCl2, 4 ATP disodium
salt, 0.4 GTP trisodium salt, 10 sodium phosphocreatine, and 0.6 EGTA, at pH
7.25. For electrophysiological recording, the slice cultures were mounted on
an upright microscope (BX51WI; Olympus Optical, Tokyo, Japan), and hippocampal
CA1 pyramidal neurons were identified visually with an infrared (IR)
differential interference contrast video microscope attached with an IR-CCD
camera (Olympus Optical). Whole-cell recordings were made simultaneously from
a pair of CA1 pyramidal neurons, one transfected and one untransfected, using
two Axopatch-1D amplifiers (Axon Instruments, Foster City, CA). Postsynaptic
responses were evoked by two bipolar electrodes with single voltage pulse (200
µsec, up to 10 V) at 0.2 Hz with stimulating electrodes placed in the
stratum radiatum
200 µm from recorded cells. Stimulus level was set to
produce a synaptic response of
50 pA. Synaptic AMPA receptor
(AMPAR)-mediated responses at -60 mV and NMDAR-mediated responses at +40 mV
were averaged over 50 trials. Series resistances typically ranged from 6 to 12
M
, and cell pairs that had >20% difference in series resistance were
discarded. Asynchronous synaptic events were picked up from events that
occurred between 150 and 500 msec after the stimulation and were analyzed with
Mini Analysis software (Synaptosoft). The events >5 pA were analyzed. All
of the experiments including data collection and analysis were performed blind
to the DNA constructs used. All of the results are reported as mean ±
SEM, and statistical significance was set at p < 0.05. Statistical
significance was tested using MannWhitney test for the data in Figures
10 and
11C and
KormogorovSmirnov test for Figure
11 B. Two-photon laser-scanning microscope imaging was
performed as described previously (Shi et
al., 1999
), using a custom-built microscope.

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Figure 10. Homer1a reduces synaptic AMPA and NMDA receptor responses. A, B,
Images and synaptic response from neurons expressing MycHomer1a
(A) or MycHomer1aW24A (B). Aa, Ba,
Two-photon laser-scanning microscope images of apical secondary dendritic
region of hippocampal CA1 pyramidal neuron coexpressing MycHomer1a or
MycHomer1aW24A with GFP-F. Scale bars, 10 µm. Homer1a-overexpressed
neurons have fewer spines than Homer1aW24A-overexpressed neurons.
Abe, Bbe, AMPAR EPSCs were evoked at -60 mV under
voltage clamp. In the presence of NBQX, outward NMDAR EPSCs were measured at
+40 mV. Ab, Bb, Averaged EPSCs recorded simultaneously from pairs of
transfected cells and a neighboring untransfected cells are shown. The
stimulus artifacts are truncated. Calibration, 20 pA, 20 msec. Ac, d, Bc,
d, For each pair of cells, the amplitude of AMPAR EPSCs (Ac, Bc)
or NMDAR EPSCs (Ad, Bd) from transfected cell is plotted against the
amplitude of response in the control cell (open symbols). Averages of all of
the values are shown in filled circles. Ae, Be, The ratio of AMPAR
EPSC and NMDAR EPSC. Open circles connected with bars represent individual
pairs of cells, and filled circles are averaged data. Homer1a: AMPAR,
n = 19/10 (number of pathways/number of cells pairs); NMDAR,
n = 11/6; AMPA/NMDA ratio, n = 11/6. HAHomer1aW24A:
AMPAR, n = 11/6; NMDAR, n = 11/6; ratio, n = 11/6.
C, PPF of synaptic responses was induced by delivering afferent
stimulation twice at an interstimulus interval of 50 msec. Calibration, 50 pA,
50 msec. D, Summary of PPF. The PPF ratios were calculated by
dividing the average amplitude of the second EPSCs by that of the first EPSCs.
There were no significant differences between the control and Homer1a or
Homer1aW24A-expressing neurons. Homer1a, n = 11/6; Homer1aW24A,
n = 11/6. Cntl, Control; H1a, Homer1a.
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Figure 11. Decreased quantal size of AMPAR-mediated EPSC in pyramidal cells expressing
Homer1a. EPSCs were evoked in a solution containing Sr
2+ instead of Ca 2+. A,
Left, Examples of asynchronous events that follow larger synchronous events.
Arrow indicates the time for the stimulation, and the bar shows the section of
trace that was used to detect quantal EPSCs (150 500 msec after the
stimulation). Calibration, 20 pA, 50 msec. Right, The average traces of
asynchronous synaptic current recorded from control cell and
Homer1a-expressing cell. Dotted line indicates peak height of control trace.
The traces scaled to match the amplitude and aligned at the onset of response
are shown at the bottom. Note that the time course of events is the same.
Calibration, 2pA, 1 msec. B, Cumulative plot of amplitude of
asynchronous synaptic current assembled from transfected and untransfected
neuronal pairs (total of 1000 events pooled from 5 pairs of neurons, each
contributing 200 events). The Homer1a-expressing cells showed a reduction in
the amplitude of the events. C, Homer1a overexpression tends to
reduce the frequency of quantal events. Data are expressed as the average
number of quantal events observed during sampling period (150 500 msec
after the stimulation; see A). n = 10/5 (number of
pathways/number of cell pairs). Cntl, Control; H1a, Homer1a. Open circles,
Individual cells; closed circles, average.
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Results
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Homer1a reduces number and size of dendritic spines
Hippocampal neurons in dissociated culture were cotransfected at 12 d
in vitro (DIV12) with Homer1a or Homer1b (epitope tagged with Myc)
plus GFP (to outline the morphology of the transfected neurons). Four to 5 d
after transfection (DIV16 DIV17), neurons were fixed, and spine density
and dimensions (length of spine and width of spine head) were measured using
the GFP channel (Sala et al.,
2001
). It should be stressed that these light-microscopic
measurements do not give the precise absolute size of spines but provide
reasonable estimates of relative changes in spine dimensions.
Neurons transfected with Homer1a, the activity-inducible short-splice
variant, showed a reduced size and number of dendritic spines compared with
control neurons transfected with GFP alone
(Fig. 1A,B,D).
Cumulative frequency plots showed a modest but statistically significant shift
to the left (lower values) for spine width and length in Homer1a transfected
neurons (Fig. 1E,F,
Table 1). In contrast, as
previously shown (Sala et al.,
2001
), spine length, width, and number were unchanged in neurons
overexpressing Homer1b, the constitutively expressed CC-Homer splice variant
(Fig. 1A,CF,
Table 1).

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Figure 1. Homer1a reduces spine number and size. AC, Hippocampal
neurons were transfected at DIV12 with GFP alone (control), or with GFP plus
MycHomer1a (H1a) or MycHomer1b (H1b), as indicated at the right,
and stained for GFP and Myc at DIV16 DIV17. A1, B1, C1,
Examples in the GFP channel of dendrites from transfected neurons.
A2,B2,C2, Myc staining. Scale bar, 5 µm. D, Number of
spines per 10 µm of dendrite length in neurons transfected with the
indicated constructs. Histograms show mean ± SEM;
*p < 0.01. E, F, Cumulative frequency plots of
spine head width (E) and length (F). More than eight
transfected neurons, corresponding to >7000 µm in dendrite length, were
measured for each condition.
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We previously showed that coexpression of Homer1b can enhance the ability
of Shank (Shank1B) to increase spine length and width, and that this effect
depends on the ability of Shank1B to bind to Homer1b
(Sala et al., 2001
). What is
the action of Homer1a in conjunction with Shank1B? Neurons cotransfected with
Shank1B and Homer1a showed no significant difference in spine width from that
of control (Fig.
2A,C,GI, Table
1) and a small but significant reduction in spine length. Thus,
unlike Homer1B, not only did Homer1a fail to enhance the spine enlargement
induced by Shank1B, but it actually abolished the effect of Shank1B on spine
growth.

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Figure 2. Homer1a inhibits Shank-mediated spine enlargement. AF,
Hippocampal neurons were transfected at DIV12 with GFP alone (control), or
with GFP plus HAShank1B (Sh1B), MycHomer1a (H1a),
MycHomer1aW24A (H1aW24A), or HAShank1B14401849
[Sh1B (14401849)], as indicated to the right, and stained for GFP, HA,
and Myc at DIV16 DIV17. Shown are examples in the GFP channel of
dendrites from transfected neurons. Scale bar, 5 µm. G, Number of
spines per 10 µm of dendrite length in neurons transfected with the
indicated constructs. Histograms show mean ± SEM;
*p < 0.01. H, I, Cumulative frequency plots of
spine head width (H) and length (I). More than eight
transfected neurons, corresponding to >7000 µm of dendrite length, were
measured for each condition.
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We then tested whether the inhibitory effect of Homer1a on Shank-mediated
spine enlargement depends on its EVH1 domain, which mediates Homer binding to
Shank. Neurons cotransfected with Shank1B and Homer1aW24A [a mutant of Homer1a
with a substitution in the binding pocket of the EVH1 domain that abolishes
binding to the PPXXF motif (Beneken et al.,
2000
)] showed enlarged spines similar to neurons overexpressing
Shank1B alone (Fig.
2D,GI, Table
1). These data suggest that Homer1a might act by competing with
endogenous CC-Homer proteins for binding to Shank1B, thereby inhibiting the
effect of Shank on spine morphology. Consistent with this notion, and in
contrast to Homer1a, the Homer1aW24A mutant had no effect on spine number or
size when overexpressed alone (Fig.
2E,GI, Table
1). Thus, the dominant-negative effect of Homer1a depends on the
EVH1 domain that binds to PPXXF motifs.
We also tested an alternative construct that should interfere with
endogenous HomerShank interaction. Overexpression of a region derived
from Shank1B (corresponding to residues 14401849 and containing the
PPXXF motif responsible for Homer binding) reduced spine number, width, and
length to a similar extent as did overexpression of Homer1a
(Fig. 2FI,
Table 1). Together, these data
indicate that spine number and dimensions are influenced by the level of
Homer1a, and that the interaction between Shank and constitutively expressed
CC-Homer isoforms (such as Homer1b/c) is required to maintain the number and
dimension of spines in hippocampal neurons.
Homer1a inhibits Shank localization in synapse
To investigate the mechanism underlying the inhibitory effect of Homer1a on
spine morphogenesis, we examined the localization of endogenous Shank in
neurons transfected with Homer1a or Homer1b. Untransfected neurons or those
transfected with vector alone showed the typical punctate synaptic staining
for Shank (Fig. 3Aa),
with a density of 8.2 ± 1.7 (mean ± SEM) Shank clusters per 10
µm of dendrite length (C). Overexpression of Homer1a drastically
reduced the number of clusters of endogenous Shank to 1.4 ± 0.3
(p < 0.01, compared with vector-transfected neurons)
(Fig. 3Ab,C), whereas
Homer1b had no effect (8.9 ± 2.3; p = 0.17) (Ac,C).
The density of Shank clusters in neurons overexpressing the Homer1aW24A mutant
was not significantly different from that of untransfected or
vector-transfected cells (7.5 ± 1.9; p = 0.08)
(Fig. 3Ad,C),
indicating that the ability of Homer1a to bind to the PPXXF motif is required
for inhibition of Shank clustering. Using immunofluorescence intensity to
quantify Homer1a protein, we found an inverse correlation between Homer1a
expression level and the density of Shank clusters in individual transfected
neurons (data not shown). We also estimated that elevation of Homer1a protein
level in individual neurons to a molar ratio of Homer1a: Homer1b/c of
1
correlated with a reduction of Shank cluster density to approximately
one-third of that in untransfected neurons (data not shown).

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Figure 3. Homer1a inhibits synaptic clustering of Shank. A, B, Neurons were
transfected at DIV12 with different constructs, as indicated at the right, and
stained at DIV16 DIV17 for Myc or HA (left; Aa1e1,
Ba1e1) to label transfected proteins, and for endogenous Shank
(middle; Aa2e2, Ba2e2). Individual channels are shown
in grayscale for better resolution and more quantitative representation of
staining intensity; color merge is shown at right (Aa3e3,
Ba3e3). C, Density of clusters of Shank per 10 µm of
dendrite length (mean ± SEM) in neurons transfected with the indicated
constructs. D, Quantification of shaft and cell body staining
intensity of endogenous Shank in neurons transfected with the indicated
constructs (mean ± SEM; >6 neurons and >7000 µm of dendrite
length for each condition). *p < 0.01. Scale bars:
Ae3 (for A), Be3 (for B), 5 µm. H1a,
Homer1a; H1b, Homer 1b; H1aW24A, Homer1aW24A.
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Overexpression of the interfering construct
Shank1B14401849 also reduced the number of endogenous Shank
clusters (2.0 ± 0.9; p < 0.01, compared with
vector-transfected neurons) (Fig.
3Ae,C). These data suggest that binding between Shank and
endogenous CC-Homer proteins is required for Shank localization or Shank
stabilization in synapses. Homer1a, being monovalent with respect to EVH1
domain and Shank binding, likely disrupts the endogenous CC-HomerShank
interaction, leading to loss of Shank from synapses.
We noted that, whereas Homer1a overexpression reduced synaptic clusters of
Shank, it enhanced the staining intensity of endogenous Shank in the cell body
(4.5 ± 1.1-fold increase; mean ± SEM) and in the dendritic shaft
(3.3 ± 0.8-fold increase) as did Shank1B14401849 (4.2
± 1.2 in the cell body and 2.9 ± 0.9 in dendritic shaft)
(Fig. 3Ba,b,e;
quantified in D). Neither Homer1b nor Homer1aW24A changed the
distribution of endogenous Shank (Fig.
3Ba,c,d,D). These data suggest that Shank accumulation in
the PSD depends on its interaction with Homer, and that Shank is redistributed
to the cytoplasm of dendritic shaft and cell body when its binding to CC-Homer
is inhibited by Homer1a.
We confirmed the effect of Homer1a on the synaptic localization of Shank by
monitoring the distribution of exogenous GFP-tagged Shank. When expressed
alone or with an empty vector, GFPShank1B was highly enriched in the
heads of dendritic spines (Fig.
5A); only a faint GFP signal was present in the cell body
and dendritic shaft. However, when Homer1a was cotransfected with
GFPShank1B, the GFP fluorescence decreased in intensity at synapses and
increased in dendritic shafts and cell body (Figs.
4 A,
5B). A similar effect
was seen with Shank1B14401849
(Fig. 5E). We
quantified the intensity of the GFP signal over the dendritic shaft and in the
synaptic area, expressing the two as a ratio
(Fig. 5L). Homer1a
reduced the spine/shaft ratio for GFPShank1B to 4.6 ± 0.5 (from
8.6 ± 1.6 for vector-transfected cells; p < 0.001).
Cotransfection with Homer1b gave the opposite result: the synaptic
accumulation of GFPShank1B increased (Figs.
4 B,
5C), and the
spine/shaft ratio was raised to 14.9 ± 2.6 (p < 0.01)
(Fig. 5L).
GFPShank1B distribution was not affected by overexpressing Homer1aW24A,
which cannot bind to Shank (spine/shaft ratio, 8.9 ± 1.2) (Figs.
4C,
5 D, L). Similarly to
Homer1a, Shank1B14401849 also reduced the GFPShank1B
spine/shaft ratio (4.9 ± 0.4; p < 0.01).

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Figure 5. Synaptic accumulation of GFPShank1B depends on interaction between
Homer and Shank. AE, Neurons were cotransfected with
GFPShank1B plus empty vector (A), Homer1a (B),
Homer1b (C), Homer1aW24A (D), or
Shank1B14401849 (E). FH, Neurons
were cotransfected with GFPShank11440 plus empty
vector (F), Homer1a (G), or Homer1b (H).
IK, Neurons were cotransfected with GFPHomer1b plus
empty vector (I), Homer1a (J), or Homer1aW24A (K).
AK show images of dendrites from transfected neurons in the
GFP channel. L, Synaptic targeting of GFPShank1B,
GFPShank1B11440, and GFPHomer1b in neurons
transfected with the indicated constructs, quantified by the ratio of staining
intensity in spine/shaft (>10 neurons examined for each construct,
corresponding to at least 6000 µm of dendrite length and 1800 synapses).
Error bars indicate SEM. *p < 0.01. Scale bar, 10
µm.
|
|

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Figure 4. Effect of Homer1a and Homer1b on synaptic targeting of GFPShank1B.
Hippocampal neurons were cotransfected at DIV12 with GFP-tagged Shank1B plus
Homer1a (A1,2) or Homer1b (B1,2) or Homer1aW24A
(C1,2), and double-labeled at DIV16 for Homer (A2,B2,C2) and
for GFPShank (A1, B1, C1). Scale bar, 20 µm.
|
|
We previously showed that Shank targeting to synapses requires the PDZ
domain of Shank (Sala et al.,
2001
). Indeed the construct
GFPShank11440, containing the PDZ domain but lacking
the C-terminal Homer binding site, was still enriched in synapses, but to a
lesser degree than Shank1B, with relatively intense GFP signal remaining in
the dendritic shaft and in the cell body (spine/shaft ratio, 6.0 ± 0.9;
compared with 8.6 ± 1.6 for Shank1B)
(Fig. 5F and data not
shown). Not surprisingly, the subcellular distribution of
GFPShank111440, which cannot bind Homer, was
unaffected by cotransfection of Homer1a or Homer1b
(Fig. 5FH,L).
Thus, binding to CC-Homer appears to be important for strong enrichment of
Shank1B in spines.
We also wanted to examine the effect of Homer1a overexpression on the
synaptic localization of CC-Homer proteins like Homer1b. Because our Homer
antibodies cannot distinguish between transfected Homer1a and endogenous
Homer1b, we studied the effect of transfected Myc-tagged Homer1a on the
distribution of cotransfected GFP-tagged Homer1b. As reported previously
(Okabe et al., 2001
),
GFPHomer1b accumulated in spines when expressed alone (spine/shaft
ratio, 7.2 ± 1.5) (Fig.
5I,L). However, on cotransfection of MycHomer1a,
the distribution of GFPHomer1b shifted toward the dendrite shaft
(spine/shaft ratio, 1.1 ± 0.4) (Fig.
5J,L). The spine targeting of GFPHomer1b was
unaffected by overexpressing Homer1aW24A (spine/shaft ratio, 6.9 ± 1.4)
(Fig. 5K,L). Thus,
Homer1a overexpression causes the dispersal of CC-Homer, as well as Shank,
from postsynaptic sites, probably by interfering with the EVH1-mediated
interaction between Homer and Shank.
The effects of Homer1a on synaptic proteins
Because Homer1a reduced the density of spines and the synaptic clustering
of Shank, we examined whether Homer1a also affects the localization of other
synaptic proteins. The density of PSD-95 puncta was not affected by the
overexpression of either Homer1b or Homer1a
(Fig. 6D). However,
the size of PSD-95 clusters was noticeably smaller in neurons overexpressing
Homer1a (
30% reduction in mean area compared with neurons transfected
with empty vector), but unchanged by Homer1b
(Fig. 6AE). The
frequency distribution analysis of PSD-95 cluster area reveals that Homer1a
increases the number of clusters with an area <0.6 µm2
(Fig. 6F). These data
suggest that the size of the PSD is diminished by Homer1a.

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Figure 6. Effect of Homer1a and Homer1b on synaptic clustering of PSD-95.
AC, Neurons were transfected with empty vector (A),
MycHomer1a (B), or MycHomer1b (C), as
indicated. Each row of images (A13, etc.) shows
double-labeling for Myc (red) and PSD-95 (green), and merge in color.
Individual channels are shown in grayscale for better resolution and more
quantitative representation of staining intensity. Scale bar, 5 µm.
DF, Histograms show number (D), area (E),
and frequency distribution of area (F) of PSD-95 clusters in neurons
transfected as indicated. *p < 0.01. More than six
neurons and >2000 synapses were examined for each construct.
|
|
We also examined the effect of Homer1a or Homer1b on the distribution of
GFPPSD-95 in cotransfected neurons. When cotransfected with Homer1b,
GFPPSD-95 was highly localized to synapses and typically concentrated
at the tips of dendritic spines, similar to vector-transfected neurons
(Fig. 7A,B). In
neurons overexpressing Homer1a, however, GFPPSD-95 clusters were
smaller, and most of them were localized close to the dendritic shaft
(Fig. 7C), consistent
with the loss of spines in these neurons. In neurons cotransfected with
GFPPSD-95 and Shank1B, which showed greatly enlarged dendritic spines,
the GFPPSD-95 fluorescence was often split in two or three clusters
within individual spines (Fig.
7D).

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Figure 7. Effect of Homer1a, Homer1b, and Shank on distribution of GFPPSD-95.
Neurons were transfected with GFPPSD-95 alone (A) or
cotransfected with GFPPSD-95 plus MycHomer1b (B),
MycHomer1a (C), or HAShank1B (D). Left panels
show GFPPSD-95 (GFP channel, green; A1, B1, C1, D1); middle
panels show staining for endogenous Shank (A2), Myc (B2,
C2), and HA (D2); right panels show merge in color (A3, B3,
C3, D3). Scale bar, 2.5 µm.
|
|
GKAP is a PSD protein that links PSD-95 and Shank
(Naisbitt et al., 1999
). As
with PSD-95, the pattern of endogenous GKAP staining was modified by Homer1a
overexpression. GKAP clusters were smaller in Homer1a-transfected neurons
(0.57 ± 0.12 µm2; mean ± SEM) compared with
Homer1b-transfected neurons (0.89 ± 0.22 µm2)
(Fig. 8A,B)or
untransfected neurons (0.87 ± 0.19 µm2) (data not
shown).

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Figure 8. Effect of Homer1a and Homer1b on clustering of other synaptic proteins.
Neurons were transfected at DIV12 with Homer1a (A, C, E), Homer1b
(B, D, F), or Shank1B14401849 (H), and
stained at DIV16 DIV17 for the transfected proteins (green) and for
endogenous GKAP (A, B), F-actin (C, D), synaptophysin
(E, F), or Homer (G, H) (red); merge is shown in color in
right panels. Scale bar, 5 µm.
|
|
Homer1b overexpression did not change the staining intensity or number of
clusters of F-actin or synaptophysin compared with untransfected or
vector-transfected neurons (Fig.
8C,E and data not shown). However, in Homer1a transfected
neurons, although staining intensity was not significantly altered, the
clusters of F-actin and synaptophysin were generally close to the dendritic
shaft instead of being slightly displaced from the shaft as is typical for
normal spine localization (Fig.
8C,E). Moreover, F-actin clusters were often elongated
instead of the usual round shape.
We finally studied the distribution of endogenous Homer in neurons
transfected with Shank1B14401849. As expected, synaptic
clustering of endogenous Homer was greatly reduced when the binding between
endogenous Shank and Homer was inhibited by Shank1B14401849
(Fig. 8G,H). These
findings are consistent with the effects of Homer1a on the distribution of
GFPHomer1b (Fig.
5I,K).
There is a correlation between spine size and the level of PSD-95 and
synaptic AMPARs (El-Husseini et al.,
2000
,
2002
;
Matsuzaki et al., 2001
). We
found that, in GFPHomer1a-transfected neurons, GluR2 surface staining
was reduced (Fig. 9B),
compared with GFPHomer1b- or vector-transfected neurons (A,C).
Moreover, GFPHomer1a overexpression reduced the number of surface AMPA
clusters to 3.3 ± 0.2 per 10 µm of dendrite, compared with
vector-transfected (7.5 ± 1.4) or GFPHomer1b-transfected neurons
(6.9 ± 1.3). The number of clusters of NMDA receptors (as detected with
an antibody against the NR1 subunit) was also reduced in neurons
overexpressing Homer1a (7.3 ± 1.0 per 10 µm of dendrite) compared
with vector-transfected (9.7 ± 1.2) or Homer1b-transfected neurons (9.1
± 1.5). In addition, Homer1a decreased the size of NR1 clusters [0.63
± 0.15 µm2; compare with 0.98 ± 0.21
µm2 (vector transfected) and 0.97 ± 0.25
µm2 (Homer1b transfected)]
(Fig.
9DF,H).

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Figure 9. Effect of Homer1a and Homer1b on AMPA receptorsand NMDA receptors. Neurons
were transfected with empty vector (A, D), GFPHomer1a
(B), MycHomer1a (E), GFPHomer1b (C),
or MycHomer1b (F) and double labeled for transfected proteins
(green) and surface GluR2 (AC) or total NR1
(DF). Scale bar, 5 µm. G, Number of surface GluR2
clusters per 10 µm of dendrite length in neurons transfected as in
AC. H, Number of NR1 clusters per 10 µm of dendrite length
in neurons transfected as in DF. *p <
0.01; more than six neurons and >2000 synapses were measured for each
construct. Error bars indicate SEM.
|
|
Together, these data show that Homer1a has a negative effect on the number
and size of spines and on the size of the PSD, which could be explained by the
impaired accumulation of Shank and other PSD proteins at the synapse.
Expression of Homer1a reduces synaptic transmission
What are the electrophysiological consequences of Homer1a overexpression?
We recorded excitatory synaptic responses from CA1 pyramidal neurons in
organotypic culture of hippocampal slice, transfected with Homer1a by the
biolistic method. These cells also exhibited morphologically similar change
(Fig. 10A,B) as seen
in dissociated culture. Pairs of adjacent transfected and untransfected
neurons were simultaneously recorded (the transfected cell identified by
fluorescence of cotransfected EGFP)
(Hayashi et al., 2000
).
Consistent with the reduced surface expression of AMPA and NMDA receptors
detected immunocytochemically, the amplitude of both AMPA and NMDA
receptor-mediated EPSCs were depressed in Homer1a-transfected neurons
(Fig. 10 A). The
ratio of AMPAR and NMDAR currents was unchanged, implying that both components
were equally affected. In contrast, neurons transfected with Homer1aW24A
showed no significant differences in AMPAR- and NMDAR-mediated EPSCs or
AMPA/NMDA ratio (Fig.
10B). Thus, Homer1a not only disrupts the morphology of
dendritic spines but also reduces the strength of synaptic transmission
through a mechanism requiring EVH1 domain-mediated protein interaction.
Paired-pulse facilitation (PPF) of AMPA receptor-mediated EPSCs (induced at
an interstimulus interval of 50 msec)
(Regehr and Stevens, 2001
) was
not significantly different between untransfected cells and cells transfected
with Homer1a or Homer1aW24A (Fig.
10C,D), suggesting that the presynaptic release
probability is not affected by Homer1a overexpression. In other control
experiments, GFP transfection alone had no effect on AMPA receptor currents
[untransfected, 46.4 ± 6.1 pA; GFP, 45.6 ± 7.3 pA; p =
0.720; n = 16/9 (number of pathways/number of cells)], NMDAR-mediated
current (control, 97.7 ± 9.8 pA; GFP, 73.7 ± 12.2 pA; p
= 0.358; n = 11/6), or PPF (control, 1.79 ± 0.04; GFP, 1.69
± 0.06; p = 0.148; n = 15/8). These data, in
conjunction with morphological data, support the idea that Homer1a reduces
glutamate receptors at synapses. To further confirm this, we compared the
quantal events of synaptic response in Homer1a-expressing and control neurons.
To compare quantal events of similar origin and postsynaptic location in
neighboring transfected and untransfected neurons, synaptic responses were
recorded in the presence of Sr2+ instead of
Ca2+. Such substitution results in a desynchronization
of transmitter release among activated release sites, thereby leading to the
occurrence of quantal events within a few hundred milliseconds of afferent
stimulation (Fig.
11A) (Goda and
Stevens, 1994
; Poncer et al.,
2002
). In such pairs, the quantal size was significantly reduced
(Fig. 11B),
consistent with the reduction of synaptic AMPA receptor number. The frequency
of events showed a slight reduction, but this did not reach statistical
significance (1Fig.
11C). Considering the fact that there are no changes in
PPF (Fig. 10D), this
is likely to reflect the reduction of amplitude of the AMPAR-mediated quantal
event below the detection threshold as well.
 |
Discussion
|
|---|
A central question in neuroscience is how dendritic spines and synapses can
be structurally and functionally modified to support experience-dependent
changes in neuronal connectivity. In this study, we showed that overexpression
of Homer1a reduces dendritic spine number and size in hippocampal neurons.
Associated with this morphological effect, Homer1a induces the redistribution
of endogenous Shank protein from synapses to dendritic shaft and cell body,
and the shrinkage of PSDs as measured by PSD-95 and GKAP staining.
Functionally, Homer1a inhibits postsynaptic AMPA and NMDA receptor currents,
in correlation with reduced surface levels of these receptors. Together, these
data suggest an inhibitory role for the inducible Homer1a protein in the
activity-dependent regulation of synapse structure and function.
Mechanism of Homer1a action
How does Homer1a affect dendritic-spine morphogenesis? Because it lacks the
coiled-coil domain that mediates multimerization, Homer1a likely functions as
a naturally occurring dominant-negative form of Homer
(Xiao et al., 2000
). Homer1a
can compete with constitutively expressed CC-Homer proteins (such as
Homer1b/c) that have the capacity to link together EVH1 domain-binding
partners such as Shank, mGluRs, and IP3 receptors. In transgenic
mice, Homer1a overexpression impairs mGluR-evoked intracellular calcium
release, presumably by disrupting the
mGluRHomer1b/cIP3R complex
(Tu et al., 1998
;
Xiao et al., 1998
). We propose
that the interaction between Shank and multimeric CC-Homer proteins is
required to stabilize ShankHomer complexes at postsynaptic sites.
Indeed strong accumulation of Shank in synapses depends on its ability to bind
to Homer (this study) as well as GKAP
(Naisbitt et al., 1999
).
Disruption of ShankCC-Homer interactions by Homer1a leads to
instability and loss of Shank from the PSD. Because Shank is a major scaffold
protein of the PSD, and important for spine morphogenesis and synapse
maturation (Sheng and Kim,
2000
; Sala et al.,
2001
; Ehlers,
2002
), the loss of Shank from the PSD could primarily explain the
negative effects of Homer1a on the morphology and function of synapses.
The above model can explain why overexpression of Homer1b, by providing
multimerized EVH1 domains for binding to Shank, would enhance the
spine-promoting effects of Shank overexpression
(Sala et al., 2001
), and why
Shank needs a Homer-binding site to accumulate strongly in spines (this study)
and to promote spine morphogenesis (Sala
et al., 2001
). Our interpretation is also supported by the fact
that overexpression of Sh1B14401849, which contains the
Homer binding site, has similar inhibitory effects on spine morphogenesis as
Homer1a, whereas the Homer1aW24A mutant is ineffective in this regard.
Our results do not exclude other mechanisms by which Homer1a could impair
spine morphogenesis. Homer1a might affect intracellular calcium responses to
activation of mGluRs or other postsynaptic receptors by interfering with
coupling to the IP3 receptor; and calcium release from
intracellular stores has been implicated in the regulation of spine morphology
(Harris, 1999
;
Korkotian and Segal, 1999
).
Homer1a has also been shown to stimulate mGluR1/5 activity
(Ango et al., 2001
), which
might influence dendritic spine morphology
(Vanderklish and Edelman,
2002
). Finally, we cannot exclude the possibility that the effect
of Homer1a on spine morphogenesis is secondary to the reduction of surface
AMPA receptors, the activity of which is required to maintain dendritic-spine
numbers (McKinney et al.,
1999
). Whatever the precise mechanism, our findings demonstrate
that inducible Homer1a acts in opposition of (and presumably in competition
with) the constitutively expressed CC-Homer proteins in the regulation of
dendritic spines.
Homer1a regulation of synapse structure and function
Homer1a not only reduces dendritic-spine dimensions and number, but also
alters the molecular content of the postsynaptic specialization, as evidenced
by reduced synaptic staining for PSD-95, GKAP, NR1, and surface GluR2. The
decreased level of these proteins suggests that a shrinkage of the
postsynaptic membrane accompanies the reduction of spine size. This
interpretation fits well with the reduction in both AMPA and NMDA currents
measured electrophysiologically. A positive correlation has been shown
previously between PSD-95 cluster size and postsynaptic AMPA currents
(Schnell et al., 2002
). Our
data extend this correlation to include GKAP and Shank, two scaffold proteins
that are physically linked to PSD-95. The similar effect of Homer1a on several
PSD proteins (Shank, GKAP, and PSD-95) suggests that the molecular composition
of the PSD is regulated in an integrated manner, perhaps coordinated by key
scaffold proteins and their specific protein interactions. Interestingly,
changes in PSD-95 level per se have been shown previously to correlate with
changes of AMPA receptor levels, but not of NMDA receptors (El-Husseini et
al., 2000
,
2002
;
Schnell et al., 2002
). The
inhibitory effect of Homer1a on NMDA receptor clustering and synaptic
responses therefore implies an action of Homer1a that is independent of its
effects on PSD-95.
Homer1a mRNA and protein expression is increased by synaptic activity, and
is associated in vivo with neural plasticity, seizure, visual
stimulation, cocaine administration, BDNF administration, and exploration of
novel environments (Brakeman et al.,
1997
; Kato et al.,
1997
; Park et al.,
1997
; Sato et al.,
2001
; Potschka et al.,
2002
; Vazdarjanova et al.,
2002
). In our hippocampal cultures, Homer1a protein expression is
also induced by 18 hr after stimulation with NMDA and kainic acid (data not
shown). Because Homer1a has profound effects on synapse morphology and
function, we hypothesize that its induction by activity could contribute to
the mechanisms of synaptic plasticity in the brain. However, the exact
physiological significance of inducible Homer1a remains unclear.
Because Homer1a is induced at the mRNA level and presumably translated
primarily in the cell body (Xiao et al.,
1998
), it lacks an obvious mechanism for targeted effects on a
specific subset of synapses. Our neuron culture experiments also suggest that
Homer1a has a widespread inhibitory effect on spines and synapses throughout
the neuron. We speculate, therefore, that Homer1a induction plays a role in
the homeostatic mechanisms that maintain the global-activity level of neurons
within a normal range (Turrigiano and
Nelson, 2000
). In such a negative-feedback model, activation of a
subset of synapses in a neuron leads to induction of Homer1a protein, which
then acts to inhibit synapses generally and reset overall activity in the
neuron to a normal level.
 |
Footnotes
|
|---|
Received Feb. 12, 2003;
revised May. 6, 2003;
accepted May. 7, 2003.
C.S. is supported by the Giovanni Armenise-Harvard Foundation Career
Development Program and MIUR (40%). K.F. is a recipient of the Special
Postdoctoral Researchers Fellowship from RIKEN. Y.H. is in part supported by
Ellison Medical Foundation. M.S. is Investigator of the Howard Hughes Medical
Institute. We thank Dr. Kenichi Okamoto for his help in imaging.
Correspondence should be addressed to Dr. Morgan Sheng, The Picower Center
for Learning and Memory and Howard Hughes Medical Institute, Massachusetts
Institute of Technology, 77 Massachusetts Avenue (E18-215), Cambridge, MA
02139. E-mail:
msheng{at}mit.edu.
K. Yamamoto's present address: Department of Neurology, Graduate School of
Medicine, Kyoto University, 54 Shogoin-Kawaharacho, Sakyoku, Kyoto 606-8507,
Japan.
Copyright © 2003 Society for Neuroscience
0270-6474/03/236327-11$15.00/0
 |
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