Table 1.

Oligodeoxynucleotide probes used for in situhybridization

TargetSpeciesProbe positionMismatchSequence of the oligonucleotideTm (°C)
α3Rat138–182?5′-GGACACCTCAAACTGGATGATGACTGGATGGGACACATTAGCCAC-3′65
α4Mouse570–61405′-GAAGTCCAGTTGGTCCACACGGCTGTGCATGCTCACCAAGTCAAT-3′71
α5Rat1077–112155′-CCGAGATTTAGGTCCAgCccCacTCTCGGCTTCTTCTCTCTGAGT-3′73
α6Mouse1451–149705′-GGGACAATACCAATTAAGAGTTTCCTGTGTTCCCAAGCAGTGGCTGC-3′66
α7Rat1206–125025′-ATCATGTGTTGGGGAGCAGGCCAAACGgCCACAtACGACCCCAGA-3′71
β2Mouse1269–131305′-TCGCATATGGTCCGCAATGAAGCGTACACCGTCCACAGCTTCCCG-3′71
β4Rat1261–1305?5′-AGCTGACACCCTCTAATGCTTCCTGTAGATCTTCCCGGAACCTCC-3′71
THRat1429–146825′-AGGTGTGCAGCTCATCCTGGACCCCCTCcAAGGAGCGCt-3′79
D1Mouse592–63805′-GCTGACGATCATAATGGCTACGGGGATGTAAAAGCTTATGAGGGAGG-3′63
D2Mouse928–97205′-GTTTGGCAGGACTGTCAGGGTTGCTATGTAGACCGTGGTGGGATG-3′70
CCKRat264–30835′-gAAATCCATCCAGCCCATGTAGTCCCGGTCACTTATcCTgTGGCT-3′74
PPERat386–43035′-GCATCCTTCTTCATGAAagCGCCATACCTCTTGGCAAGGATCTCg-3′67
PPTRat123–16715′-GGCGATTCTCTGaAGAAGATGCTCAAAGGGCTCCGGCATTGCCTC-3′68
  • The melting temperature (Tm) is calculated for the most stringent wash condition (0.01 m NaCl, 0% formamide) as described byLe Novère et al. (1996). The indicated position is in reference to the A of the ATG. When the oligonucleotide was designed according to the rat cDNA sequence, and when corresponding mouse cDNA sequence was available, we indicated the number and position (lowercase characters) of the mismatches. (“?” means that the mouse cDNA sequence was not available).