Table 4.

Functional clusters of enriched GO categories (most significant category of each cluster shown)

Annotation cluster #TermCategoryCountGenesp valueFold enrichmentEnrichment score
1TranscriptionGOTERM_BP_FAT29Per1, Ddit3, Egr2, Jun, Arid4b, Klf2, Nr4a3, Eid3, Ccnl1, Rax, Med14, Egr4, Txnip, Nr4a2, Nfil3, Fos, JunB, Npas4, Nr4a1, Btg2, Egr3, Zbtb10, Cry2, Gtf2a2, Crem, Stat1/Stat4, Atf3, FosB, Egr19.08E-093.497.0
2Positive regulation of macromolecule metabolic processGOTERM_BP_FAT28Ddit3, Csrnp1, Klf4, Egr2, Zfp36, Rnf6, Jun, Irs2, F2, Klf2, Nr4a3, Hnrpll, Med14, Egr4, Barx2, Cdx1, Nr4a2, Rel, Gmpr2/Tinf, Klf4, Fos, JunB, Npas4, Nr4a1, Inhba, Gtf2a2, Pdgfb, Sertad1, Egr12.23E-062.745.9
3Basic-leucine zipper (bZIP) transcription factorINTERPRO8Ddit3, Crem, Jun, FosB, Atf3, JunB, Fos, Nfil31.34E-0613.895.1
4Regulation of apoptosisGOTERM_BP_FAT21Sgk1, Txnip, Ddit3, Hipk1, Nr4a2, Rel, Jun, Rock1, Casp8ap2, Nr4a1, Btg2, Bdnf, Skil, Inhba, Dusp1, Hspb1, G2e3, Hspa1a/Hspa1l/Hspa1b, Ptgs2, Birc2, Stat1/Stat41.64E-042.563.7
5Membrane-enclosed lumenGOTERM_CC_FAT27Klf4, Rnf6, Jun, Dld, Ptgs2, Ccnl1, Med14, Barx2, Txnip, Dusp6, Zbtb33, Hipk1, Dusp4, Rps6ka5, Rel, Midn, Gmpr2/Tinf, Klf4, Fos, Npas4, Nr4a1, Cdkn2aip, Gtf2a2, Pdgfb, Fxc1-ps1/Fxc1, Crem, Stat1/Stat4, Atf31.90E-042.133.3
6Negative regulation of cellular biosynthetic processGOTERM_BP_FAT18Per1, Barx2, Txnip, Klf4, Dnajb5, Gmpr2/Tinf, Sik1, Klf4, Kdm6b, Insig1/LOC688922, Skil, Foxn3, Bcl6b, Zbtb10, Pdgfb, Pdcd4, Edn1, Egr1, Hbegf9.11E-053.002.9
7Response to oxidative stressGOTERM_BP_FAT8Nd6, Txnip, Ddit3, Dusp1, Ptgs2, Jun, Stat1/Stat4, Fos6.38E-033.632.7
8Regulation of synaptic transmissionGOTERM_BP_FAT8Plk3, Bdnf, Plat, Arc, Egr2, Ptgs2, Edn1, Egr13.68E-034.022.6
9Transcription from RNA polymerase II promoterGOTERM_BP_FAT7Med14, Ddit3, Gtf2a2, Jun, FosB, JunB, Fos1.10E-035.952.4
10Phosphate metabolic processGOTERM_BP_FAT20Sgk1, Dusp6, Dusp4, Pim3, Gpd1, Rps6ka5, Alpk1, Sik1, Rock1, Fam63b, Dld, Bdnf, Plk3, Gadd45b, Gadd45g, Dusp1, Prkx, Lats1, Stat1/Stat4, Trib14.08E-032.022.2
11Blood vessel morphogenesisGOTERM_BP_FAT8Gbx2, Plat, Cyr61, Tiparp, Jun, Edn1, JunB, Apold16.98E-033.571.8
12Negative regulation of protein kinase activityGOTERM_BP_FAT6Dusp6, Gadd45g, Gadd45b, Hmgcr, Pdcd4, Trib11.64E-036.941.7
13Positive regulation of apoptosisGOTERM_BP_FAT10Nr4a1, Txnip, Inhba, Ddit3, Dusp1, Hipk1, Ptgs2, Jun, Stat1/Stat4, Casp8ap21.91E-022.481.7
14Zinc finger, C2H2-type/integrase, DNA-bindingINTERPRO6Egr4, Egr3, Zbtb10, Egr2, Klf2, Egr14.49E-023.071.7
15Response to bacteriumGOTERM_BP_FAT7Defb10, Ptgs2, Jun, Stat1/Stat4, Fos, Pcsk1, Trib14.62E-022.671.6
16Response to progesterone stimulusGOTERM_BP_FAT4Txnip, FosB, JunB, Fos6.56E-0310.301.6
17ATPase activity, coupled to transmembrane movement of substancesGOTERM_MF_FAT5Abcc4, Atp11b, Atp13a3/LOC678704, Abcg2, Abcb1a3.19E-024.151.6
18Dual specificity protein phosphatase (MAP kinase phosphatase)PIR_SUPERFAMILY3Dusp6, Dusp1, Dusp41.83E-0342.711.4
19ABC transportersKEGG_PATHWAY4Abcc4, Abcd2, Abcg2, Abcb1a8.77E-039.141.4
20Nerve growth factor IB-like nuclear receptorPIR_SUPERFAMILY3Nr4a1, Nr4a2, Nr4a35.58E-0471.181.3
21Sterol biosynthetic processGOTERM_BP_FAT4Insig1/LOC688922, Idi1, Hmgcr, Ch25 h5.98E-0310.641.3
22Negative regulation of apoptosisGOTERM_BP_FAT9Btg2, Sgk1, Bdnf, Hspb1, Nr4a2, G2e3, Hspa1a/Hspa1l/Hspa1b, Birc2, Rock14.99E-022.211.3
23Nucleotide bindingGOTERM_MF_FAT34Htatsf1, Abcc4, Sgk1, Rap1b, Atp11b, Hmgcr, Abcg2, Rock1, Ddx50, Dld, Plk3, LOC306096, Hspa1a/Hspa1l/Hspa1b, Atp13a3/LOC678704, Lats1, Arl5b, Hnrpll, Abcb1a, Trib1, Pim3, Gpd1, Rps6ka5, Kif5b, Arl4d, Arl13b, Alpk1, Sik1, Mat2a, LOC499330, Prkx, Mat2a, Abcd2, Cry2, Rab18, Dync2h11.81E-021.471.3
  • Shown are the different functional clusters of significantly enriched GO categories of the differentially expressed genes. For each cluster, the term, category, count, and genes (Gene symbol) are shown, together with the p value and the fold enrichment.