Table 3.

Biophysical characterization of GCaMPs

ϵa (M−1cm−1)QYbτc (ns)ΔF/Fod pH 7.25QY*σ2e pH 9.5 (+ Ca2+)Peak brightnessf (kcpsm) pH 9.5 (+Ca2+)
pH 7.25 (+Ca2+)pH 9.5 (+Ca2+)pH 7.25 (+Ca2+)pH 9.5 (+Ca2+)pH 7.25 (+Ca2+)pH 7.25 (−Ca2+)pH 9.5 (+Ca2+)pH 9.5 (−Ca2+)
EGFP56,00057,8000.730.702.62.62.62.6113.4
GCaMP238,10054,800 (60,600)0.530.552.02.12.02.15.7 ± 1.40.806.7
GCaMP337,70056,300 (66,500)0.650.672.82.72.72.610.6 ± 1.20.839.5
GCaMP5A56,10058,100 (60,900)0.650.622.72.82.62.717 ± 4.20.899.9
GCaMP5D25,30048,100 (58,300)0.670.632.72.72.72.818 ± 3.70.789.0
GCaMP5G49,30058,500 (61,300)0.670.672.72.82.72.731 ± 9.40.969.3
  • aPeak extinction coefficient at 497 nm (485 nm for GCaMP2, 487 nm for EGFP), based on concentration determined by alkali denaturation: 0.1 m NaOH, ϵ = 44,000 m−1cm−1 at 447 nm. Values in parentheses are based on concentration measurements obtained by two-photon FCS at pH 9.5.

  • bQuantum yield (QY) using fluorescein (QY = 0.93) in pH 11/H2O as a standard.

  • cFluorescence lifetime under two-photon excitation (960 nm, 2 mW), fit to a single-exponential decay.

  • dCalcium-dependent contrast ΔF/F in pH 7.25 buffer, for 940 nm excitation; SD calculated for eight or more measurements.

  • eTwo-photon action cross section (QY × two-photon cross section σ2 per molecule) at 940 nm excitation, relative to EGFP, in pH 9.5 buffer containing 1 mm CaCl2.

  • fPeak brightness per emitting fluorophore, in kilocounts per second per molecule (kcpsm), defined as the maximum fluorescence rate divided by the number of emitting fluorophores in the excitation beam volume as determined from FCS measurements, as the laser power is scanned from 1–80 mW at an excitation wavelength of 940 nm.