Table 6.

List of 141 nuclear proteins identified by RNA affinity purification coupled with LC-MS/MS

Gene IDTotal Spe countRelated functionGene IDTotal Spe countRelated function
G31 oligoA31 oligoSplicingTranscriptionChr bindingRNA bindingG31 oligoA31 oligoSplicingTranscriptionChr bindingRNA binding
ABCA1220H1FX80
ACIN101HADHA40
ARID220HCFC110
BLMH07HIST1H1B182
BRD310HIST1H1C160
BUB330HIST1H1D163
BUD1320HNRNPA1219
CAPRIN110HNRNPA2B1221
CASP1420HNRNPA392
CBX801HNRNPAB30
CCAR110HNRNPC50
CCDC12410HNRNPH120
CCDC1720HNRNPH310
CCNK20HNRNPK63
CDC2730HNRNPL31
CDK11A10HNRNPR50
CHAF1B20HNRNPU20
DDX17132HP1BP360
DDX1820HSPA832
DDX21140KHDRBS160
DDX2350KIF4A31
DDX39B10KPNA101
DDX4720LUC7L10
DDX562MATR330
DDX621MKI6770
DHX9110MTDH03
DKC124NAT1051
DNAJC820NCL308
EEF1A190NCOA210
EEF1D20NOLC123
EFTUD210NONO150
FBL10NOP243
G3BP220NOP5680
GEMIN401NPM156
GNB110NTHL101
GTF3C110NUMA130
NUSAP130SEPT230
PA2G450SEPT720
PAK1IP130SERBP110
PARP120SF3A130
PCBP120SF3B120
PCBP230SF3B230
PHB201SF3B340
PLRG120SFPQ194
POLDIP310SMARCA540
POLR1E22SNRNP20010
POP120SNRPA23
PPP1CA30SNRPB30
PPP1CB43SPTBN110
PPP1CC20SRRT10
PRPF1910SRSF1156
PRPF372SRSF240
PRPH21SRSF540
PSIP110SRSF640
PSPC101SRSF740
RBM1550SYNPO214
RBM2520TCEB310
RBM2720TCOF194
RBM2810THRAP340
RBM3910TOP120
RBMX20TOP2A10
RFC210TOPORS01
RFC301TOX320
RPL3130WBP1110
RPS1320WDR1210
RTF130WHSC110
RUVBL160YBX120
RUVBL220YTHDC110
S100A901ZC3H1401
SART140ZC3H410
SEPT1151
  • Total spectrum (Spe) count was from analysis of LC-MS/MS data using Scaffold software. Related functions including splicing, transcription, chromatin (Chr) binding, and RNA binding for the listed proteins were obtained from analysis using Ingenuity Serve. G31 and A31, Biotinylated RNA oligos used in RNA affinity purification.