Table 5.

Test of association independent of rs9479757

Test SNP−2 Log likelihoodLikelihood ratio test
rs9479757 aloners9479757 along with test SNPχ2dfp value
  • Haplotypes were constructed with each of the listed SNPs and rs9479757. The likelihood of a null model consisting only of rs9479757 and the alternative model including the other SNP were computed, and a likelihood ratio test was performed. All analyses were done using the chap-independent effect command in Plink version 1.07.