Test SNP | −2 Log likelihood | Likelihood ratio test | |||
---|---|---|---|---|---|

rs9479757 alone | rs9479757 along with test SNP | χ^{2} | df | p value | |

rs527434 | 120 | 120 | 5.6e-06 | 1 | 0.998 |

rs632499 | 120 | 118 | 2.39 | 1 | 0.122 |

rs13195018 | 120 | 116 | 4.01 | 2 | 0.134 |

Haplotypes were constructed with each of the listed SNPs and rs9479757. The likelihood of a null model consisting only of rs9479757 and the alternative model including the other SNP were computed, and a likelihood ratio test was performed. All analyses were done using the chap-independent effect command in Plink version 1.07.