Table of 934 proteins identified in the HC sample, but not in the IE or SE datasets (“HC-only”) ordered alphabetically by gene name (n = 458)
| Gene name | UniProt accession nos. (no. of peptides mapped, no. of spectral counts) |
|---|---|
| 1110004E09Rik* | D3YZC4 (1, 1); D6REH7 (1, 1); Q8BL95 (1, 1) |
| 2310036O22Rik* | Q9D735 (1, 1) |
| 4833439L19Rik*, P33monox* | D3Z1F7 (1, 1); Q9DBN4 (1, 1); Q9DBN4-2 (1, 1) |
| 4922501L14Rik | G3UY94 (1, 2) |
| 4930407I10Rik* | D3Z5T8 (1, 3) |
| 5430421N21Rik* | E9Q1Y9 (1, 1) |
| 6030458C11Rik | Q8BGC1-3 (1, 1) |
| 8030462N17Rik* | Q0VAW6 (1, 1); Q8BH50 (1, 1); Q8BH50-2 (1, 1) |
| A2mp** | Q6GQT1 (2, 19) |
| A730017C20Rik* | E9Q5J6 (1, 1); H3BJK3 (1, 1); Q8C4X7 (1, 1) |
| Abhd10* | F6X5P5 (1, 1); Q6PE15 (2, 2); Q6PE15-2 (2, 2) |
| Abracl* | E9QMV2 (1, 1); Q4KML4 (1, 1) |
| Acad10* | Q8K370 (2, 2) |
| Acad12* | D3Z7X0 (2, 2) |
| Acsf3 | Q3URE1-2 (1, 1) |
| Adprhl1* | Q8BGK2 (1, 1) |
| Aftph* | H3BJH7 (1, 1); Q80WT5 (1, 1); Q80WT5-2 (1, 1) |
| Agps | H3BIY5 (1, 1) |
| Agtrap* | Q9WVK0 (1, 1) |
| Ahctf1* | F6SJR1 (1, 1); Q8CJF7 (1, 1) |
| Aldh1a3 | G3UWP3 (4, 4) |
| Amfr* | Q9R049 (2, 3); Q9R049-2 (2, 3) |
| Ank1 | D6RJ51 (1, 1); G3UY11 (1, 1) |
| Ank3 | S4R162 (1, 3) |
| Ankrd24* | Q80VM7 (2, 3) |
| Ankrd49* | Q8VE42 (1, 1) |
| Aoc2* | A2A4I9 (1, 1); Q812C9 (1, 1) |
| Ap3b2* | Q9JME5 (7, 10) |
| Apba1 | B2RUJ5-2 (4, 22) |
| Arhgap11a* | Q80Y19 (1, 1) |
| Arl1 | F8WIB1 (4, 4) |
| Arl6ip1* | Q9JKW0 (1, 3) |
| Arl6ip4* | D3YWC2 (1, 2); D3Z6F1 (1, 2); Q9JM93 (1, 2) |
| Armc8* | G3X920 (2, 2); Q9DBR3 (2, 2); Q9DBR3-2 (2, 2); Q9DBR3-3 (2, 2) |
| Armt1* | A6H630 (1, 1); A6H630-2 (1, 1); A6H630-3 (1, 1); A6H630-4 (1, 1) |
| Asb3* | A8Y5I6 (1, 1); Q9WV72 (1, 1) |
| Atad2b* | E9Q166 (2, 5) |
| Ate1* | J3QNU1 (2, 2); Q4FCQ7 (2, 2); Q9Z2A5 (2, 2); Q9Z2A5-2 (2, 2) |
| Atp4a** | E9QNX7 (1, 2); Q64436 (1, 2); Q91WH7 (1, 2) |
| Atp8a2* | P98200 (1, 1) |
| Aven* | A2AGL5 (1, 2); Q9D9K3 (1, 2) |
| B9d2* | Q3UK10 (1, 1) |
| Bad* | D3YZR8 (1, 2); F7ABX5 (1, 2); Q3U9H3 (1, 2); Q61337 (1, 2) |
| Bag6 | G3UYZ0 (2, 8); G3V013 (2, 8) |
| Bbs4* | Q8C1Z7 (1, 1) |
| Bbs9* | Q811G0 (1, 1); Q811G0-2 (1, 1); Q811G0-4 (1, 1) |
| BC007180* | F6QRE9 (1, 1) |
| BC017158* | D6RDS0 (1, 1); Q91W34 (1, 1); Q91W34-2 (1, 1) |
| Bcl2** | P10417 (1, 1); P10417-2 (1, 1) |
| Birc6 | J3QP64 (1, 1); S4R268 (2, 2); S4R2J7 (1, 1) |
| Blmh | E9QA53 (3, 3) |
| Bpifb9b* | A2AJD1 (1, 1); Q80XI7 (1, 1); Q80XI7-2 (1, 1) |
| Brsk1* | D3Z5P0 (1, 1); Q5RJI5 (1, 1) |
| Bsdc1* | Q80Y55 (1, 1) |
| Btaf1* | E9QAE3 (1, 1) |
| C4b** | P01029 (3, 3) |
| Calml4* | E9Q1L1 (1, 1); Q91WQ9 (1, 1); Q91WQ9-2 (1, 1); Q91WQ9-3 (1, 1) |
| Casz1* | B1AS46 (2, 5); B1AS48 (1, 1); Q9CWL2 (2, 5); Q9CWL2-2 (2, 5) |
| Ccdc104* | Q8C6E0 (2, 2) |
| Ccdc33* | E9QQ55 (1, 1); Q3ULW6 (1, 1) |
| Ccdc39* | Q9D5Y1 (1, 1) |
| Ccdc40* | Q8BI79 (2, 2); Q8BI79-2 (2, 2); Q8BI79-3 (2, 2) |
| Ccnk* | O88874 (2, 4); Q3U3M5 (2, 4) |
| Cdk13** | Q69ZA1 (3, 4); Q69ZA1-2 (3, 4) |
| Chd8* | Q09XV5 (1, 2); Q09XV5-2 (1, 2) |
| Chp1 | B0R092 (1, 1) |
| Chst2* | Q80WV3 (1, 1) |
| Cisd3* | B1AR13 (1, 3); B2RWE3 (1, 3) |
| Clk3* | O35492 (1, 1) |
| Commd7** | Q8BG94 (1, 2) |
| Cox4i2* | Q91W29 (1, 1) |
| Cpeb2* | D3YUJ4 (1, 1); E9Q5X2 (1, 1); E9Q969 (1, 1); Q812E0 (1, 1) |
| Cpeb3* | D3Z1R6 (1, 1); D3Z5R9 (1, 1); F6T0J8 (1, 1); Q7TN99 (1, 1); Q7TN99-2 (1, 1); Q7TN99-3 (1, 1); Q7TN99-4 (1, 1); Q7TN99-5 (1, 1) |
| Cpeb4* | Q5SU47 (1, 1); Q5SU48 (1, 1); Q7TN98 (1, 1); Q7TN98-2 (1, 1); Q7TN98-3 (1, 1); Q7TN98-4 (1, 1); Q7TN98-5 (1, 1) |
| Cpt2 | A2A8E9 (2, 5) |
| Cradd* | O88843 (1, 1) |
| Cryzl1 | D3YZD6 (1, 1); F7BGV1 (1, 1); Q921W4-2 (1, 1) |
| Ctbp2 | E9Q123 (1, 1) |
| Ctif* | E9Q1U6 (1, 1); Q6PEE2 (1, 1); Q6PEE2-2 (1, 1) |
| Ctnnb1 | D3Z5Q1 (1, 1); E9PW26 (1, 1) |
| Cyb5d2* | Q5SSH8 (1, 1) |
| Cyb5r1 | G3UZG6 (1, 2) |
| Cyb5r2* | Q3KNK3 (1, 2); Q3KNK3-2 (1, 2) |
| Cyld* | Q80TQ2 (1, 2); Q80TQ2-2 (1, 2) |
| Cyp2s1* | D3Z762 (1, 1); D3Z7F1 (3, 4); Q9DBX6 (3, 4) |
| D2Wsu81e* | Q3UHX9 (1, 1); Q3UHX9-2 (1, 1) |
| D630045J12Rik*, Kiaa1549* | D3YTS3 (1, 1); F7ATU7 (1, 1); Q68FD9 (1, 1) |
| Dach1** | Q9QYB2 (1, 1); Q9QYB2-2 (1, 1) |
| Dcp1a* | Q91YD3 (1, 1) |
| Ddx39b | G3UXI6 (2, 14) |
| Dgke* | F2Z490 (1, 1); Q9R1C6 (1, 1) |
| Dicer1* | F8VQ54 (1, 1); Q8R418 (1, 1); Q8R418-2 (1, 1) |
| Dnaaf2* | Q8BPI1 (1, 1) |
| Dnah10* | D3YYQ8 (1, 1); F7ABZ6 (1, 1) |
| Dnah5* | Q8VHE6 (1, 1) |
| Dnai2*, Dnaic2* | A2AC93 (1, 1); A2AC93-2 (1, 1); R4GML5 (1, 1) |
| Dnajb2* | Q9QYI5 (1, 5); Q9QYI5-2 (1, 5) |
| Dpf3* | F6T820 (1, 1); F7CL41 (2, 2); F7CPB1 (2, 2); P58269 (2, 2); P58269-2 (2, 2); P58269-3 (1, 1); P58269-4 (2, 2) |
| Dph6 | Q9CQ28-3 (1, 3) |
| Dst | S4R1Y6 (1, 1); S4R2A8 (1, 1); S4R2C6 (1, 1) |
| Dtd1* | Q9DD18 (1, 1); Q9DD18-2 (1, 1) |
| Dtna | Q9D2N4-5 (2, 2); Q9D2N4-6 (2, 2) |
| Dusp14* | Q9JLY7 (1, 1) |
| Dxo* | G3UWW3 (1, 1); G3UZ39 (1, 1); O70348 (1, 1) |
| Dync2h1 | D3Z025 (8, 11); Q45VK7-3 (3, 6) |
| Dynlrb2* | Q9DAJ5 (3, 4); Q9DAJ5-2 (3, 4) |
| Echdc1* | E0CXS3 (1, 1); Q9D9V3 (2, 2); Q9D9V3-2 (2, 2) |
| Edc4 | F6V5I7 (1, 1); F6ZJ27 (2, 2) |
| Ehmt1* | A2AIS5 (1, 1); E9Q5A3 (2, 2); Q5DW34 (2, 2); Q5DW34-2 (2, 2); Q5DW34-3 (2, 2); Q8BRN2 (1, 1) |
| Enpp4* | Q8BTJ4 (1, 1); Q8BTJ4-2 (1, 1) |
| Ephx1 | F6YTS6 (4, 7) |
| Epn2** | F7CD65 (1, 1); F7CUV7 (1, 1); J3QNT7 (1, 1); Q5NCM5 (1, 1); Q5NCM6 (1, 1); Q8CHU3 (1, 1); Q8CHU3-2 (1, 1) |
| Espn* | B1AWP7 (1, 2); B1AWP8 (1, 2); B1AWP9 (1, 2); B1AWQ0 (1, 2); B1AWQ1 (1, 2); B1AWQ3 (1, 2); B1AWQ4 (1, 2); Q9DD12 (1, 2); Q9ET47 (1, 2); Q9ET47-2 (1, 2); Q9ET47-3 (1, 2); Q9ET47-4 (1, 2); Q9ET47-5 (1, 2); Q9ET47-6 (1, 2); Q9ET47-7 (1, 2); Q9ET47-8 (1, 2) |
| Espnl* | H3BLK9 (4, 7); Q3UYR4 (4, 7) |
| Evl* | E9PVP4 (2, 2); F8WJB9 (2, 2); P70429 (2, 2); P70429-2 (2, 2) |
| Eya4* | Q8BY78 (2, 3); Q9Z191 (1, 2) |
| Fam160b1* | Q8CDM8 (1, 2); Q8CDM8-2 (1, 2) |
| Fam168a* | Q8BGZ2 (1, 1); Q8BGZ2-2 (1, 1) |
| Fam192a* | Q91WE2 (1, 1) |
| Fam63a* | Q76LS9 (1, 1); Q76LS9-2 (1, 1) |
| Fbp2* | P70695 (2, 3) |
| Fbxo46* | Q8BG80 (1, 1) |
| Fcrlb* | Q5DRQ8 (13, 37) |
| Fer1l4* | A3KGK3 (1, 2); A3KGK3-2 (1, 2) |
| Fggy* | A2AJL3 (3, 4); A2AJL3-2 (3, 4); A2AJL4 (3, 4); B7ZCH9 (1, 1); D6RG41 (2, 3); F7ANG8 (1, 1) |
| Fhod3* | Q76LL6 (1, 1); Q76LL6-2 (1, 1); Q76LL6-3 (1, 1); Q76LL6-4 (1, 1) |
| Fjx1* | Q8BQB4 (1, 1) |
| Flg2* | E9QPZ3 (1, 2); Q2VIS4 (1, 2) |
| Fn3krp* | Q8K274 (1, 1) |
| Fubp3 | F6S444 (1, 1); F6W2V3 (1, 1) |
| Gab2* | Q3ZB57 (1, 1); Q9Z1S8 (1, 1) |
| Gabarapl1* | Q8R3R8 (1, 1) |
| Galk2 | B7ZCT3 (1, 1); B7ZCT4 (1, 1); B7ZCT5 (1, 1) |
| Gas7* | B1ATI9 (1, 1); Q3U432 (1, 1); Q60780 (1, 1); Q60780-2 (1, 1) |
| Gdap1l1** | A2A5H8 (1, 2); Q3USC7 (2, 4); Q8VE33 (2, 4) |
| Gga3* | A2A9W7 (1, 1); Q8BMI3 (1, 1) |
| Gm17190* | V9GX38 (3, 20) |
| Gm20683* | H3BKJ1 (1, 1) |
| Gm4944* | J3QM38 (1, 1) |
| Gm5039* | J3QNT6 (1, 4) |
| Gm5414* | Q6IFZ8 (1, 3) |
| Gm8420 | E9Q1X1 (1, 1) |
| Gmfg | D3YY16 (1, 1) |
| Gmppa | D3YVK2 (2, 2); D3Z2L8 (2, 2); D3Z5Z5 (2, 2) |
| Gpaa1** | E9PW03 (1, 1); E9QA52 (1, 1); F6T7Y8 (1, 1); Q9WTK3 (1, 1) |
| Gpkow* | Q56A08 (1, 1) |
| Gpx2* | Q9JHC0 (3, 4) |
| Grhpr | B1AXQ0 (1, 1) |
| Grip1* | D3YWY4 (1, 2); D3YZL8 (1, 2); D3Z066 (1, 2); D3Z6R6 (1, 2); D3Z6T4 (1, 2); H7BX09 (1, 2); H7BX90 (1, 2); Q6GQT7 (1, 2); Q925T6 (1, 2); Q925T6-2 (1, 2); Q925T6-3 (1, 2) |
| Grxcr1* | G3X9N2 (1, 1); Q50H32 (1, 1) |
| Grxcr2* | Q3TYR5 (1, 1) |
| Gsdma* | Q9EST1 (1, 1) |
| Gsdma2* | Q32M21 (1, 1); Q32M21-3 (1, 1) |
| Gsdma3* | Q5Y4Y6 (1, 1) |
| Gtf2a2* | D3Z793 (2, 7); D3Z7C2 (2, 7); D3Z7S8 (2, 7); D6RIQ7 (2, 7); Q05C74 (2, 7); Q80ZM7 (2, 7) |
| Hal* | P35492 (1, 1) |
| Hba-x**, Hbz** | A7M7S6 (1, 3); P06467 (1, 3) |
| Heatr2* | B9EJR8 (1, 1) |
| Heatr3* | Q8BQM4 (1, 1) |
| Hip1r | F7DCR9 (1, 2) |
| Hmg20a | Q9DC33-2 (1, 1); Q9DC33-3 (1, 1) |
| Hmga1 | P17095-1 (1, 1) |
| Hn1* | P97825 (1, 1) |
| Hnrnph3 | D3Z6Y3 (1, 2) |
| Hnrnpll | Q921F4-5 (1, 1) |
| Hook1* | Q8BIL5 (2, 2); Q8BIL5-2 (2, 2) |
| Hpcal1* | P62748 (1, 5) |
| Hsd11b2* | P51661 (1, 2) |
| Hspa4l | F6TFH3 (1, 1) |
| Hspb11* | Q9D6H2 (1, 1) |
| Huwe1 | F6UYC1 (1, 1) |
| Iba57* | Q8CAK1 (1, 1) |
| Idi1 | H3BKD7 (1, 1); H3BLP1 (1, 1) |
| Idua* | P48441 (1, 1); Q8BLF6 (1, 1); Q8BMG0 (1, 1) |
| Ift172* | Q6VH22 (1, 1) |
| Ilvbl | Q8BU33-2 (1, 2); Q8BU33-3 (1, 2) |
| Inpp5j* | P59644 (1, 1) |
| Ints6 | Q6PCM2-3 (1, 1) |
| Ints9* | Q8K114 (2, 2); Q8K114-2 (1, 1) |
| Iqcd* | Q9D3V1 (1, 1); Q9D3V1-2 (1, 1) |
| Itpkc* | Q7TS72 (1, 1) |
| Kcnab1* | P63143 (2, 2); Q3U6C5 (2, 2); Q9D5E9 (2, 2) |
| Kcnab2* | E0CXZ9 (1, 1); P62482 (1, 1); Q3UPV6 (1, 1) |
| Kcnj13* | P86046 (1, 1) |
| Klc2 | D3Z5Y7 (2, 2) |
| Klf11* | Q8K1S5 (1, 1) |
| Klhdc7b* | E9Q9M9 (2, 6) |
| Kncn* | Q307W7 (1, 1) |
| Krt13 | P08730-2 (5, 14) |
| Krt16** | Q9Z2K1 (6, 13) |
| Krt20* | Q9D312 (2, 3) |
| Krt24** | A1L317 (1, 1) |
| Krt28** | A6BLY7 (1, 1) |
| Krt31** | Q61765 (1, 1) |
| Krt32* | B1ATJ5 (1, 1); Q62168 (1, 1) |
| Krt33b** | Q61897 (1, 1) |
| Krt35** | Q497I4 (1, 1) |
| Krt36* | B1AQ75 (1, 1) |
| Krt40** | Q6IFX3 (1, 1) |
| Krt72** | Q6IME9 (1, 7) |
| Krt78* | E9Q0F0 (1, 7) |
| Krt81* | Q9ERE2 (1, 1) |
| Krt83* | Q6IMF0 (2, 2) |
| Krt85* | Q9Z2T6 (2, 2) |
| Krt86* | P97861 (1, 1) |
| Ksr1* | Q5SXE2 (1, 1); Q5SXE4 (1, 1); Q61097 (1, 1); Q61097-2 (1, 1) |
| Lactb2* | Q99KR3 (2, 3) |
| Lchn* | Q3UHG7 (1, 1); Q3UHG7-2 (1, 1) |
| Lgalsl* | Q8VED9 (3, 3) |
| Lgi2* | Q8K4Z0 (1, 1); Q8K4Z0-2 (1, 1) |
| Limd1* | Q9QXD8 (2, 4) |
| Limk2* | O54785 (1, 1); O54785-2 (1, 1); O54785-3 (1, 1); Q5NC03 (1, 1) |
| Lmbrd2* | Q8C561 (1, 1); Q8C561-2 (1, 1); Q8C561-3 (1, 1) |
| Lmo7 | E0CZD8 (1, 1) |
| Lnp** | A2ASL8 (1, 1); A2ASM0 (1, 1); Q7TQ95 (1, 1) |
| Lpin2* | E9PWN0 (1, 1); Q99PI5 (1, 1) |
| Lrrc16a* | D3Z030 (2, 6); F7AI27 (1, 2); Q6EDY6 (2, 6); Q6EDY6-3 (2, 6) |
| Lsm1* | Q8VC85 (1, 1) |
| Lyz1* | P17897 (1, 2) |
| Macf1 | F6RCJ3 (1, 1); F6RL59 (1, 1); Q9CYG3 (1, 1) |
| Madd | A6PWP7 (2, 3) |
| Map9* | Q3TRR0 (1, 1); Q3TRR0-2 (1, 1) |
| Mboat7* | D3YU33 (2, 3); Q8CHK3 (2, 3) |
| Mcat** | Q8R3F5 (2, 2) |
| Mcl1* | P97287 (1, 1); P97287-2 (1, 1) |
| Med1* | Q925J9 (1, 1); Q925J9-4 (1, 1) |
| Med8* | A2A9C6 (1, 1); A2A9C8 (1, 1); Q9CY05 (1, 1); Q9D7W5 (1, 1); Q9DAY7 (1, 1) |
| Mepce | F6XIE4 (1, 3) |
| Metap1d* | Q9CPW9 (1, 1) |
| Mfn1* | F6XRI9 (1, 1); Q811U4 (1, 1) |
| Mgst1** | E9QJW0 (1, 1); Q91VS7 (1, 1) |
| Minos1* | Q7TNS2 (1, 1) |
| Misp** | Q9D279 (1, 1) |
| Mllt4 | F7C3I9 (1, 2) |
| Mms19 | F7A0X7 (1, 1); F7C9N6 (1, 1) |
| Mpc1* | D3Z786 (1, 2); P63030 (1, 2) |
| Mpdz | A3KG84 (1, 2); I7HJS5 (1, 2) |
| Mpp7* | G5E8S8 (1, 1); Q8BVD5 (1, 1); Q8BVD5-2 (1, 1); Q8BVD5-4 (1, 1); Q8BVD5-5 (1, 1) |
| Mri1 | F6YY88 (1, 2) |
| Mrpl22* | Q8BU88 (1, 1) |
| Mrpl9* | Q3UK02 (1, 3); Q99N94 (1, 3) |
| Mrps11* | Q3U8Y1 (1, 1); Q9DCA2 (1, 1) |
| Mrps5* | Q99N87 (1, 1) |
| Msh2 | G3UXD8 (1, 1) |
| Msrb3* | D3YUC9 (1, 2); Q8BU85 (1, 2) |
| Mtfr1l | D3YW54 (3, 3); D3Z0X8 (3, 3); D6RCX5 (3, 3); Q9CWE0-2 (3, 3) |
| Mthfd2* | P18155 (1, 1) |
| Myl2* | P51667 (1, 7) |
| Myo3a* | A2ASW0 (1, 1); F6QNG5 (1, 1); Q8K3H5 (1, 1) |
| Myo3b* | F8VQ79 (1, 1); Q1EG27 (1, 1); Q1EG27-2 (1, 1) |
| Nbeal1* | E9PV03 (1, 1) |
| Nccrp1** | G3X9C2 (1, 7) |
| Nck1* | Q8BH99 (1, 1); Q99M51 (1, 1) |
| Ncoa1* | P70365 (1, 1); P70365-2 (1, 1); P70365-3 (1, 1); P70365-4 (1, 1) |
| Ncor2 | D3Z2J5 (1, 1); F6Z4B2 (1, 1) |
| Ndufa12 | F6RBR6 (1, 1) |
| Ndufaf4* | Q9D1H6 (1, 1) |
| Neb | A2AQB2 (1, 2); F6X9B6 (1, 2) |
| Necap1* | Q9CR95 (1, 1) |
| Nf2* | F8WJ43 (1, 1); P46662 (1, 1); P46662-2 (1, 1) |
| Nfatc4* | Q8K120 (1, 3); Q8K120-2 (1, 3) |
| Nfib** | A2BG75 (1, 1); A2BG76 (1, 1); A2BG77 (1, 1); I7HIP8 (1, 1); P97863 (1, 1); P97863-2 (1, 1); P97863-3 (1, 1) |
| Nhsl1* | Q8CAF4 (1, 2); Q8CAF4-3 (1, 2) |
| Nit1 | D3YY53 (2, 2); D3Z2Y2 (2, 2); D3Z3I3 (2, 2) |
| Nlgn3* | A2AGI2 (1, 1); A2AGI3 (1, 1); Q8BYM5 (1, 1) |
| Nln* | Q91YP2 (2, 2) |
| Noc3l* | Q8VI84 (1, 1) |
| Nptn | H3BKA7 (1, 1) |
| Nrbp1* | D3YUV1 (1, 1); Q99J45 (1, 1) |
| Nt5dc3* | Q3UHB1 (2, 2) |
| Nudt16l1 | Q8VHN8-3 (1, 1) |
| Nup214 | A2ATN3 (1, 1) |
| Nup35** | A2ATJ2 (1, 1); Q8R4R6 (1, 1) |
| Nup88 | J3QNZ2 (1, 3) |
| Nxt1** | Q9QZV9 (1, 1) |
| Ocm* | P51879 (1, 1) |
| Osbp2* | Q5QNQ4 (1, 1); Q5QNQ6 (1, 1); Q8K0C7 (1, 1) |
| Oscp1* | Q8BHW2 (2, 2) |
| Otud7b* | B2RUR8 (1, 1) |
| Ovca2* | Q9D7E3 (1, 1) |
| Paip1 | G3UYE5 (2, 3); G3UZH8 (1, 2); G3UZS6 (1, 2) |
| Pak1 | S4R2K7 (2, 2) |
| Pak3 | A3KGC3 (1, 1); A3KGC4 (1, 1); A3KGC5 (5, 9) |
| Palm3* | A2TJV2 (7, 9) |
| Paqr9* | Q6TCG2 (1, 2) |
| Pawr* | Q925B0 (1, 2) |
| Pcif1* | P59114 (1, 1) |
| Pde4dip* | E9Q1A0 (3, 4); G3X9L9 (3, 4); H3BJ38 (2, 3); Q3UR03 (2, 3); Q80YT7 (3, 4); Q80YT7-2 (3, 4) |
| Pex5l* | D3YYH0 (1, 1); D3YYH1 (1, 1); F8SLP9 (1, 1); F8SLQ3 (1, 1) |
| Pgam5* | Q8BX10 (1, 2) |
| Pgm2l1 | E0CX81 (1, 1) |
| Phax* | G5E8V8 (1, 1); Q9JJT9 (1, 1) |
| Phc2* | Q9QWH1 (1, 2); Q9QWH1-2 (1, 2) |
| Phc3* | B7ZNA5 (1, 1); D3YY34 (1, 1); E9QPT4 (1, 1); Q8CHP6 (1, 1); Q8CHP6-2 (1, 1) |
| Phrf1* | A6H619 (1, 1); A6H619-2 (1, 1) |
| Pi4kb | D6RI80 (1, 1) |
| Pick1* | E9PUZ5 (1, 1); E9QAC6 (1, 1); Q62083 (1, 1) |
| Pih1d1* | Q9CQJ2 (1, 1) |
| Pik3r2* | O08908 (1, 1) |
| Pkn2 | Q8BWW9-3 (1, 2) |
| Pknox2* | Q8BG99 (1, 1) |
| Pkp1* | P97350 (1, 2) |
| Pkp4* | A2AS45 (1, 2); A2AS47 (1, 2); Q68FH0 (1, 2); Q68FH0-2 (1, 2) |
| Plce1* | Q8K4S1 (1, 1); S4R1Q8 (1, 1) |
| Plekha7* | Q3UIL6 (1, 1); Q3UIL6-2 (1, 1); Q3UIL6-3 (1, 1); Q3UIL6-5 (1, 1); Q3UIL6-6 (1, 1); S4R243 (1, 1) |
| Plekho1* | F6XQM2 (1, 1); Q9JIY0 (1, 1) |
| Poldip2* | F6SQH7 (1, 1); Q91VA6 (1, 1) |
| Poldip3 | F6VR84 (1, 1) |
| Pou4f3* | Q63955 (2, 2) |
| Ppox* | P51175 (2, 2) |
| Ppp2r5b* | Q6PD28 (2, 2) |
| Prepl | Q8C167-3 (1, 1) |
| Prr15* | Q9D1T5 (1, 1) |
| Prrc2c | S4R209 (2, 2); S4R2L9 (3, 3) |
| Prrt4* | B2RU40 (1, 1) |
| Psma6 | E0CYT2 (1, 3) |
| Psmd13 | E9PY93 (1, 4) |
| Pten* | O08586 (1, 1) |
| Ptpn3* | A2ALK8 (1, 1) |
| Pum1** | A8WHM8 (1, 2); E9Q6M7 (1, 2); Q3TTW5 (1, 2); Q80U78 (1, 2); Q80U78-2 (1, 2); Q80U78-3 (1, 2); Q80U78-4 (1, 2) |
| Pus10 | B0QZU5 (1, 2) |
| Qpctl* | Q8BH73 (1, 1); Q8BH73-2 (1, 1) |
| Qtrt1* | Q9JMA2 (2, 2) |
| Rab3d | D3YW33 (1, 1); D3YWL1 (1, 1) |
| Rab3ip* | Q68EF0 (3, 8) |
| Rabepk* | A2AUF7 (1, 1); B0R0S4 (2, 2); Q8VCH5 (2, 2) |
| Ralgapb* | A2ACC6 (1, 1); A2ACC7 (1, 1); E9Q0J2 (1, 1); F8WHN4 (1, 1); Q8BQZ4 (1, 1); Q8BQZ4-2 (1, 1) |
| Ranbp9 | P69566-2 (1, 1) |
| Rasal2* | D3YUS5 (1, 1); E9PW37 (1, 1); E9PYD8 (1, 1) |
| Rasgrp4* | E0CX54 (1, 1); E0CZ06 (1, 1); E9QKB7 (1, 1); Q8BTM9 (1, 1); Q8BTM9-2 (1, 1); Q8BTM9-3 (1, 1); Q8BTM9-4 (1, 1) |
| Rbm27** | Q5SFM8 (1, 1); Q5SFM8-2 (1, 1); Q5SFM8-3 (1, 1) |
| Rbm33* | D3Z5I9 (1, 1); Q9CXK9 (1, 1) |
| Rcc2 | A2AWQ2 (2, 5) |
| Rdh12* | Q8BYK4 (3, 4) |
| Rdh13* | Q8CEE7 (1, 2) |
| Rnf40* | Q3U319 (1, 1) |
| Rnmt | D3Z4K1 (1, 1) |
| Rpp25l* | Q99JH1 (1, 1) |
| Rprd2* | Q6NXI6 (1, 1); Q6NXI6-2 (1, 1) |
| Rsph10b* | E9PYQ0 (1, 1) |
| Rsph9* | F7B7Q8 (1, 1); Q9D9V4 (1, 1) |
| Rtn1** | A3QM89 (1, 2); Q7M6W1 (1, 2); Q8K0T0 (1, 3) |
| Rtn4ip1** | Q924D0 (1, 1) |
| Sall1* | Q6P5E3 (1, 1); Q9ER74 (1, 1) |
| Sap130* | J3QNK5 (1, 1); Q8BIH0 (1, 1); Q8BIH0-2 (1, 1); Q8BIH0-3 (1, 1) |
| Scaf4* | Q6PFF0 (1, 1); Q7TSH6 (1, 1) |
| Scai** | Q8C8N2 (1, 1) |
| Scrib | D3YU97 (2, 2) |
| Scyl2 | Q80UY7 (1, 3) |
| Sdcbp* | A2AKJ6 (1, 1); A2AKJ9 (1, 1); H3BLG5 (1, 1); O08992 (1, 1); Q3TMX0 (1, 1) |
| Sdhc* | D3Z1A8 (1, 5); Q9CZB0 (1, 5) |
| Sdsl* | Q8R238 (1, 1) |
| Sec61a2* | A2ATT9 (1, 3); Q9JLR1 (1, 3) |
| Selh** | Q3UQA7 (1, 2) |
| Serpinb13* | Q8CDC0 (1, 1); Q8CDC0-2 (1, 1) |
| Setd6* | Q9CWY3 (1, 1) |
| Setdb1* | D3YYC3 (1, 5); G5E8N3 (1, 5); O88974 (1, 5); O88974-3 (1, 5); O88974-4 (1, 5) |
| Sh2d4b* | A6X942 (3, 4); A6X942-2 (3, 4) |
| Sh3gl2 | F6ZL13 (1, 1) |
| Shank2* | D3Z5K8 (1, 1); D3Z5K9 (1, 1); Q80Z38 (1, 1); Q80Z38-2 (1, 1) |
| Shroom2* | A2ALU4 (3, 3); A7TU71 (3, 3) |
| Skor1* | D3YX64 (2, 2); Q8BX46 (2, 2); Q8BX46-2 (2, 2) |
| Skor2* | A7M7C7 (1, 1) |
| Slc25a11 | Q5SX48 (2, 3) |
| Slc25a46* | Q9CQS4 (1, 2) |
| Slc26a5* | D3Z013 (2, 5); D6RIK0 (1, 4); Q32MT6 (2, 5); Q99NH7 (2, 5) |
| Slc27a2* | A2ANX6 (1, 1); O35488 (1, 1) |
| Smap2* | Q7TN29 (3, 8); Q7TN29-2 (3, 8) |
| Smarca1 | Q8BS67 (1, 2) |
| Smarcal1* | Q8BJL0 (1, 1); Q8BJL0-2 (1, 1); Q8BJL0-3 (1, 1); Q8BJL0-4 (1, 1) |
| Smg7* | Q5RJH6 (1, 1); Q5RJH6-2 (1, 1); Q5RJH6-3 (1, 1) |
| Smpdl3a | D3Z1B4 (1, 2) |
| Smtn* | D3YVS1 (1, 1); D3Z3Q3 (1, 1); Q921U8 (1, 1); Q921U8-2 (1, 1); Q921U8-3 (1, 1); Q921U8-4 (1, 1) |
| Smug1* | Q6P5C5 (1, 1) |
| Snrpe | E9PZG9 (1, 1) |
| Spag8* | Q3V0Q6 (1, 1); Q5UAV3 (1, 1) |
| Spats2l | E9Q106 (1, 1) |
| Spryd4* | Q91WK1 (1, 1) |
| Srcin1** | B1AQX6 (2, 3); B1AQX7 (2, 3); B1AQX9 (2, 3); Q9QWI6 (1, 1); Q9QWI6-2 (1, 1); Q9QWI6-3 (1, 1) |
| Srgap2* | Q91Z67 (1, 3) |
| Srp54 | P14576-2 (1, 1) |
| Srpk1 | F8WGJ7 (1, 1) |
| Stk32c* | Q8QZV4 (1, 1) |
| Stk4 | Q8CDG4 (1, 1) |
| Strbp | A2BH83 (1, 1) |
| Strc* | Q8VIM6 (1, 1) |
| Stx16 | B7ZCB7 (1, 2) |
| Taf4a* | E9QAP7 (1, 2); F6W8W7 (1, 2) |
| Tapt1* | Q4VBD2 (1, 1) |
| Tars2* | Q3TP97 (1, 1); Q3UQ84 (1, 1); Q922A3 (1, 1) |
| Tbpl1* | P62340 (1, 2) |
| Tbrg4* | Q91YM4 (1, 2); Q91YM4-2 (1, 2) |
| Tcp11* | B2KF24 (1, 1); B2KF25 (1, 1); Q01755 (1, 1); Q5FWA2 (1, 1) |
| Tgfb1i1 | Q62219-6 (1, 2) |
| Tgm1* | Q9JLF6 (1, 1) |
| Thoc5* | Q5SVF8 (1, 2); Q5SVF9 (3, 4); Q8BKT7 (3, 4) |
| Tjap1* | Q9DCD5 (2, 4) |
| Tmcc2* | Q3T9T1 (2, 2); Q3TZY4 (2, 2); Q80W04 (2, 2) |
| Tmem11* | E9Q933 (2, 8); Q8BK08 (2, 8) |
| Tmem173* | Q3TBT3 (6, 6); Q3TBT3-2 (6, 6); Q3TBT3-3 (6, 6) |
| Tmem259* | F6RN19 (1, 2); Q8CIV2 (1, 2); Q8CIV2-2 (1, 2) |
| Tmem9b* | D3Z6W5 (1, 1); Q9JJR8 (1, 1) |
| Tmtc4* | Q8BG19 (1, 2); Q8BG19-3 (1, 2) |
| Tnxb* | E9Q2T3 (1, 1); O35452 (1, 1) |
| Tomt* | A1Y9I9 (3, 11) |
| Top2b | F6U5K2 (1, 1) |
| Tor1aip2 | Q8BYU6 (1, 2) |
| Tpgs1* | Q99MS8 (1, 1) |
| Trappc11* | B2RXC1 (1, 1) |
| Trim36* | E9Q3A0 (4, 8); Q80WG7 (4, 8) |
| Trim45* | A2ACL2 (2, 3); E9Q2K9 (2, 3); F6SXK7 (2, 3); Q6PFY8 (2, 3); Q6PFY8-2 (2, 3) |
| Triobp | G5E8W1 (1, 3); Q99KW3-5 (3, 3) |
| Trp53bp1 | F6S5E4 (2, 2) |
| Trrap* | E9PWT1 (1, 1); E9PZA7 (1, 1); E9QLK7 (1, 1); F7CGG2 (1, 1); Q80YV3 (1, 1) |
| Tsc2* | Q61037 (2, 3); Q61037-2 (2, 3); Q61037-3 (2, 3); Q61037-4 (2, 3); Q61037-5 (2, 3); Q61037-6 (2, 3); Q61037-7 (2, 3); Q7TT21 (2, 3) |
| Tsc22d1 | H3BJ00 (1, 1); H3BK98 (1, 1); H3BLH4 (1, 1) |
| Ttc8* | Q8VD72 (1, 1); Q8VD72-2 (1, 1) |
| Txlna | A2ADZ2 (1, 1); Q6PAM1-2 (1, 1) |
| Txndc11* | Q8K2W3 (1, 1) |
| Ubac1* | Q8VDI7 (1, 1) |
| Ube3b* | Q9ES34 (1, 1) |
| Ubl4 | F8WHM4 (1, 1) |
| Uckl1* | F7CAK3 (1, 1); Q91YL3 (1, 1) |
| Ugcg* | O88693 (1, 1) |
| Uqcc2* | D3Z4C9 (1, 1); D3Z4D6 (1, 1); Q9CQY6 (1, 1) |
| Uqcr11* | Q9CPX8 (1, 2) |
| Uros** | P51163 (1, 1) |
| Usp30* | Q3UN04 (1, 2) |
| Usp36* | B1AQJ2 (1, 1) |
| Usp8* | A2AI52 (1, 1); Q80U87 (1, 1) |
| Usp9x | E9PWA9 (1, 1); G3UZS3 (1, 1) |
| Vangl2* | D3YY75 (1, 1); Q91ZD4 (1, 1) |
| Vwa8 | Q8CC88-2 (3, 4) |
| Wac* | E9Q020 (1, 3); E9Q4Y9 (1, 3); E9Q5D5 (1, 3); F6R357 (1, 3); F6Z247 (1, 3); Q924H7 (1, 3); Q924H7-2 (1, 3); Q924H7-3 (1, 3) |
| Wdr12* | D3Z369 (1, 1); Q9JJA4 (2, 2) |
| Wdr19* | Q3UGF1 (1, 1); Q3UGF1-2 (1, 1); Q3UGF1-3 (1, 1) |
| Wdr26* | E0CYH4 (2, 3); F7DFQ2 (1, 2); F8WH48 (1, 1); Q8C6G8 (2, 3) |
| Wdr5 | F6Q3W0 (3, 5) |
| Wdr54 | D3Z394 (2, 4) |
| Wdr6* | Q99ME2 (1, 4) |
| Wdr76* | A6PWY4 (1, 1); A6PWY4-2 (1, 1); A6PWY4-3 (1, 1) |
| Wdr77 | D6RIL4 (1, 1) |
| Wdr81** | F6XD87 (1, 1); K4DI77 (1, 1); Q5ND34 (1, 1); Q5ND34-2 (1, 1); Q5ND34-3 (1, 1) |
| Wipf3** | D3Z5R4 (1, 1); E9Q2D0 (1, 1); P0C7L0 (1, 1); P0C7L0-2 (1, 1) |
| Wnk1** | F6U2S8 (1, 1); P83741 (1, 1); P83741-2 (1, 1); P83741-3 (1, 1); P83741-4 (1, 1); P83741-5 (1, 1) |
| Wnk2* | E0CYT1 (1, 2); E0CZE3 (1, 2); E9Q6Q2 (1, 2); E9QJQ9 (1, 2); E9QM73 (1, 2); E9QMI8 (1, 2); E9QMI9 (1, 2); F7BQG5 (1, 2); Q3UH66 (1, 2); Q3UH66-2 (1, 2); Q3UH66-3 (1, 2); Q3UH66-4 (1, 2); Q3UH66-5 (1, 2); Q3UH66-6 (1, 2); Q3UH66-7 (1, 2) |
| Wwc1* | Q5SXA9 (1, 1) |
| Xab2 | F6TM12 (1, 1) |
| Xirp2* | Q4U4S6 (2, 2); Q4U4S6-2 (1, 1) |
| Ylpm1 | F6YTL8 (2, 2) |
| Zc3h14* | Q8BJ05 (1, 1); Q8BJ05-2 (1, 1); Q8BJ05-3 (1, 1) |
| Zc3h18 | H3BJJ9 (1, 2) |
| Zfr | D3Z5G4 (2, 5); D3Z7V6 (2, 5) |
| Zgpat* | Q8VDM1 (1, 1) |
| Zhx2* | Q8C0C0 (1, 1) |
| Zmat3* | B9EI21 (1, 1); O54836 (1, 1) |
| Znf598* | Q80YR4 (1, 1); Q80YR4-2 (1, 1); Q80YR4-3 (1, 1) |
| Zswim8* | Q3UHH1 (2, 2); Q3UHH1-2 (2, 2); Q3UHH1-3 (2, 2); Q3UHH1-4 (2, 2) |
Distinct protein isoforms or protein sequences (according to UniProt mouse protein database) are listed individually for each gene, along with corresponding peptide and spectral counts. Gene names with a single asterisk signify genes that are categorized as “HC-only,” meaning that all associated proteins were identified only in the HC sample and not also in the GFP− sample (n = 313). Gene names without asterisks have some HC-only proteins (listed here), but other proteins from the same gene were also identified in the IE and/or SE samples (n = 107). Gene names with double asterisks signify genes categorized as “HC-only” by the enrichment approach (comparing IE, SE, and HC samples), but that were also identified in a “control” set of purified GFP− cells (n = 38). UniProt accession numbers are unique protein identifiers from the UniProt database. Numbers following the UniProt accession numbers signify an entry for a specific isoform.