Table 3.

Top 100 genes regulated in the Cx3cr1^GFP/GFP retinae at P14

Gene name	Transcript	Regulation (Cx3cr1^GFP/GFP vs WT)	p value
Crygd	ILMN_240632	17.42	0.0000247
Crygb	ILMN_222948	15.92	0.0000459
Erdr1	ILMN_221931	14.81	0.0018341
Cryba1	ILMN_214639	12.67	0.0003662
Crygs	ILMN_218946	9.56	0.0012495
Cryba2	ILMN_212719	8.40	0.0018360
Crygc	ILMN_247742	7.51	0.0000159
Cryba4	ILMN_218620	7.01	0.0009379
Crybb2	ILMN_216365	5.49	0.0031111
Crybb3	ILMN_220283	5.12	0.0007055
Cryaa	ILMN_213225	4.09	0.0056395
LOC665032	ILMN_233071	3.87	0.0000047
Crybb1	ILMN_218933	3.63	0.0003985
Cryga	ILMN_219207	3.31	0.0001126
Xist	ILMN_187626	2.95	0.0255923
Abhd14b	ILMN_246267	2.69	0.0000498
Wdfy1	ILMN_184827	2.57	0.0000172
1810013B01Rik	ILMN_224073	2.17	0.0004003
BC032265	ILMN_224441	2.04	0.0001126
1700047I17Rik1	ILMN_221070	1.86	0.0008434
Cdk5rap1	ILMN_210158	1.79	0.0074371
Cryab	ILMN_217805	1.64	0.0285807
Nicn1	ILMN_209291	1.64	0.0000678
Mtap1b	ILMN_220448	1.58	0.0036510
EG627624	ILMN_247810	1.57	0.0000687
LOC668038	ILMN_316510	1.56	0.0060444
Guca1a	ILMN_220524	1.55	0.0300676
Kcne2	ILMN_213229	1.55	0.0146115
LOC100048530	ILMN_311555	1.50	0.0266064
Rn18s	ILMN_241508	1.48	0.0072960
Slc16a6	ILMN_233199	1.48	0.0023188
Rai1	ILMN_222328	−1.49	0.0007107
D030035F05Rik	ILMN_205484	−1.49	0.0435819
Tuft1	ILMN_184505	−1.50	0.0071321
Pdhb	ILMN_206331	−1.51	0.0028265
scl000260.1_64	ILMN_186860	−1.51	0.0188281
LOC384382	ILMN_200605	−1.51	0.0118750
Raf1	ILMN_203721	−1.51	0.0004298
Nrxn3	ILMN_186459	−1.51	0.0045190
C230070D10Rik	ILMN_206449	−1.52	0.0030692
BC030499	ILMN_250820	−1.52	0.0006435
Srr	ILMN_206790	−1.52	0.0001989
Otx1	ILMN_217984	−1.53	0.0023874
Msi1 h	ILMN_206457	−1.54	0.0014083
LOC100046129	ILMN_319878	−1.54	0.0007598
LOC382163	ILMN_201443	−1.54	0.0253172
Prdm2	ILMN_230695	−1.55	0.0007373
Unc13b	ILMN_248534	−1.55	0.0028161
F730023C13Rik	ILMN_207147	−1.56	0.0049047
LOC385274	ILMN_201506	−1.56	0.0212427
Snca	ILMN_218187	−1.57	0.0223110
Gja1	ILMN_217762	−1.58	0.0023868
E530004K11Rik	ILMN_206656	−1.58	0.0087823
Kcnma1	ILMN_205056	−1.58	0.0054532
Slc13a4	ILMN_214987	−1.58	0.0011619
A130070G01Rik	ILMN_204057	−1.59	0.0017209
A430106G13Rik	ILMN_195915	−1.59	0.0006800
D230046H12Rik	ILMN_206396	−1.59	0.0000227
Mtap7	ILMN_201776	−1.60	0.0001934
1110004P21Rik	ILMN_191964	−1.62	0.0000673
LOC385256	ILMN_201494	−1.62	0.0153742
Zmiz1	ILMN_258289	−1.62	0.0326173
Trim3	ILMN_184744	−1.62	0.0001600
Prf1	ILMN_215956	−1.63	0.0043147
Zxda	ILMN_257105	−1.65	0.0005543
(Table continues)
A230057G18Rik	ILMN_186103	−1.69	0.0002916
Fos	ILMN_222500	−1.69	0.0091080
4933439C20Rik	ILMN_201669	−1.71	0.0015183
Chka	ILMN_252861	−1.71	0.0007560
Clasp1	ILMN_237018	−1.72	0.0008889
LOC236604	ILMN_325715	−1.72	0.0048868
A330068P14Rik	ILMN_191871	−1.75	0.0152988
F830002E14Rik	ILMN_207172	−1.76	0.0122756
Tmem181	ILMN_248539	−1.76	0.0003768
2810423O19Rik	ILMN_224094	−1.79	0.0056417
scl0002069.1_48	ILMN_187328	−1.84	0.0027987
A830055I09Rik	ILMN_205168	−1.86	0.0017236
BC030476	ILMN_209600	−1.87	0.0004203
Lrrc2	ILMN_239373	−1.90	0.0001355
2900060B14Rik	ILMN_192396	−1.91	0.0136437
Dusp7	ILMN_218093	−1.94	0.0005954
Insig2	ILMN_217996	−1.97	0.0037118
Entpd4	ILMN_240362	−2.02	0.0001330
LOC381946	ILMN_201000	−2.07	0.0037097
Lars2	ILMN_221567	−2.25	0.0000001
H3f3b	ILMN_240518	−2.36	0.0008136
Gsto1	ILMN_213260	−2.37	0.0109962
Stfa1	ILMN_245739	−2.41	0.0239512
Emp1	ILMN_213976	−2.63	0.0261338
6430571L13Rik	ILMN_214086	−2.77	0.0006210
Trf	ILMN_192134	−3.05	0.0000235
Dorz1	ILMN_224020	−3.39	0.0000202
Wdr82	ILMN_329373	−3.51	0.0000019
Atp2c1	ILMN_211584	−3.72	0.0000028
Egr1	ILMN_215729	−3.89	0.0002716
Rpl29	ILMN_221019	−4.29	0.0000007
2810409M01Rik	ILMN_201789	−5.03	0.0000038
Epm2aip1	ILMN_218771	−8.95	0.0000289
LOC383308	ILMN_200537	−11.87	0.0000003

Wild-type and Cx3cr1^GFP/GFP animals were taken at P14 and subjected to an Illumina beadchip array (WG-6 version 2). The top 100 differentially regulated genes are shown below, including the extent of the regulation and the estimated p value.