Short alanine-based peptides may form 3(10)-helices and not alpha-helices in aqueous solution

Nature. 1992 Oct 15;359(6396):653-5. doi: 10.1038/359653a0.

Abstract

Short alanine peptides, containing 16 or 17 residues, appear to form alpha-helices in aqueous solution. But the main spectroscopic analyses used on helical peptides (circular dichroism and nuclear magnetic resonance) cannot distinguish between an alpha-helix (in which the ith residue is hydrogen-bonded to residue i + 4; ref. 9) and the next most common peptide helix, the 3(10)-helix10 (i-->i + 3 hydrogen-bonding). To address this problem we have designed single and doubly spin-labelled analogues of alanine-based peptides in which the nitroxide spin label forms an unbranched side chain extending from the sulphur atom of a cysteine residue. Here we report the circular dichroism, Fourier-transform infrared and electron-spin resonance spectra of these peptides under helix-forming conditions. The infrared absorbance gives an amide I' band with a frequency that is substantially different from that observed for alpha-helices. The electron-spin resonance spectra of doubly labelled helices show that the ranking of distances between side chains, around a single turn (residues 4-8), is inconsistent with an alpha-helical structure. Our experiments suggest that the more likely peptide geometry is a 3(10)-helix.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Alanine / chemistry*
  • Amino Acid Sequence
  • Circular Dichroism
  • Electron Spin Resonance Spectroscopy
  • Fourier Analysis
  • Molecular Sequence Data
  • Peptides / chemistry*
  • Protein Structure, Secondary*
  • Spectrophotometry, Infrared
  • Spin Labels

Substances

  • Peptides
  • Spin Labels
  • Alanine