Identification of a TRAF (TNF receptor-associated factor) gene in Caenorhabditis elegans

J Mol Evol. 1998 Dec;47(6):656-62. doi: 10.1007/pl00006423.

Abstract

Many members of the tumor necrosis factor (TNF) receptor superfamily and the interleukin-1 (IL-1) receptor engage intracellular signaling pathways including the nuclear factor kappaB (NF-kappaB)-, c-jun N-terminal kinase (JNK)-, and extracellular signal-regulated kinase (ERK) pathways by direct or indirect interaction with TNF receptor-associated factor (TRAF) molecules. To date, six mammalian members of the TRAF family have been identified. Searching public databases with a sequence pattern comprising 19 conserved amino acid residues derived from the carboxyl-terminal part of the TRAF homology domain, we found significant sequence homologies to a stretch of genomic DNA from Caenorhabditis elegans which encodes 1 of 12 exons of a putative protein. The sequence of this putative protein shows up to 29% sequence identity to the mammalian TRAFs and is therefore designated C. elegans TRAF (CeTRAF). The CeTRAF molecule has an amino-terminal RING finger motif followed by four zinc finger structures and a carboxyl-terminal TRAF domain, a composition which is also found in most of the mammalian TRAFs. Reverse transcription-PCR and sequencing analysis of the respective amplicon clearly demonstrates that CeTRAF is in fact transcribed in C. elegans. The existence of a member of the TRAF family in C. elegans provides strong evidence for evolutionary conserved pathways linking cell surface receptors to activation of JNK, ERK, and NF-kappaB.

Publication types

  • Comparative Study

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Caenorhabditis elegans / genetics*
  • Caenorhabditis elegans / metabolism
  • Conserved Sequence
  • DNA Primers / genetics
  • DNA, Helminth / genetics
  • Evolution, Molecular*
  • Genes, Helminth*
  • Helminth Proteins / genetics*
  • Humans
  • Mice
  • Molecular Sequence Data
  • NF-kappa B / metabolism
  • Polymerase Chain Reaction
  • Receptors, Tumor Necrosis Factor / genetics*
  • Sequence Homology, Amino Acid
  • Signal Transduction
  • Species Specificity
  • Zinc Fingers / genetics

Substances

  • DNA Primers
  • DNA, Helminth
  • Helminth Proteins
  • NF-kappa B
  • Receptors, Tumor Necrosis Factor