Dendritic attenuation of synaptic potentials and currents: the role of passive membrane properties
N Spruston, DB Jaffe, D Johnston - Trends in neurosciences, 1994 - Elsevier
The dendritic trees of neurons are structurally and functionally complex integrative units
receiving thousands of synaptic inputs that have excitatory and inhibitory, fast and slow, and …
receiving thousands of synaptic inputs that have excitatory and inhibitory, fast and slow, and …
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
We report the application of single-molecule-based sequencing technology for high-throughput
profiling of histone modifications in mammalian cells. By obtaining over four billion bases …
profiling of histone modifications in mammalian cells. By obtaining over four billion bases …
The ENCODE (ENCyclopedia of DNA elements) project
…, M Clamp, K Lindblad-Toh, J Chang, DB Jaffe… - Science, 2004 - scholarworks.bwise.kr
The ENCyclopedia Of DNA Elements (ENCODE) Project aims to identify all functional elements
in the human genome sequence. The pilot phase of the Project is focused on a specified …
in the human genome sequence. The pilot phase of the Project is focused on a specified …
Genome-scale DNA methylation maps of pluripotent and differentiated cells
…, X Zhang, BE Bernstein, C Nusbaum, DB Jaffe… - Nature, 2008 - nature.com
DNA methylation is essential for normal development 1 , 2 , 3 and has been implicated in
many pathologies including cancer 4 , 5 . Our knowledge about the genome-wide distribution …
many pathologies including cancer 4 , 5 . Our knowledge about the genome-wide distribution …
Genome sequence, comparative analysis and haplotype structure of the domestic dog
Here we report a high-quality draft genome sequence of the domestic dog (Canis familiaris),
together with a dense map of single nucleotide polymorphisms (SNPs) across breeds. The …
together with a dense map of single nucleotide polymorphisms (SNPs) across breeds. The …
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
…, C Nusbaum, ES Lander, DB Jaffe - Proceedings of the …, 2011 - National Acad Sciences
Massively parallel DNA sequencing technologies are revolutionizing genomics by making it
possible to generate billions of relatively short (~100-base) sequence reads at very low cost. …
possible to generate billions of relatively short (~100-base) sequence reads at very low cost. …
[HTML][HTML] Evolution of genes and genomes on the Drosophila phylogeny
…, MJ Hubisz, D Hultmark, MA Huntley, DB Jaffe… - Nature, 2007 - hal.science
Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves
the precision and sensitivity of evolutionary inference, producing more robust results than …
the precision and sensitivity of evolutionary inference, producing more robust results than …
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
Targeting genomic loci by massively parallel sequencing requires new methods to enrich
templates to be sequenced. We developed a capture method that uses biotinylated RNA 'baits' …
templates to be sequenced. We developed a capture method that uses biotinylated RNA 'baits' …
[HTML][HTML] Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
… WM were responsible for gene model refinement, database design and database maintenance;
GM, J. Kämper, RK, GS, M. Feldbrügge, JS, CWB, UF, MB, BS, BJS, MJC, ECHH, SM, FB…
GM, J. Kämper, RK, GS, M. Feldbrügge, JS, CWB, UF, MB, BS, BJS, MJC, ECHH, SM, FB…
ALLPATHS: de novo assembly of whole-genome shotgun microreads
…, ES Lander, C Nusbaum, DB Jaffe - Genome …, 2008 - genome.cshlp.org
… , “K-mer Numbering and Database”). The unipaths can then … interval in the K-mer path
database the K-mer number before and … We proceed forward through the database looking for …
database the K-mer number before and … We proceed forward through the database looking for …