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ARTICLE

Three-Dimensional Structure and Composition of CA3→CA1 Axons in Rat Hippocampal Slices: Implications for Presynaptic Connectivity and Compartmentalization

Gordon M. G. Shepherd and Kristen M. Harris
Journal of Neuroscience 15 October 1998, 18 (20) 8300-8310; DOI: https://doi.org/10.1523/JNEUROSCI.18-20-08300.1998
Gordon M. G. Shepherd
1Department of Neurology, Massachusetts General Hospital, Boston, Massachusetts 02114,
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Kristen M. Harris
2Program in Neuroscience, Harvard Medical School, and
3Division of Neuroscience in the Department of Neurology, Children’s Hospital, Boston, Massachusetts 02115
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  • Fig. 1.
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    Fig. 1.

    Location, orientation, and sectioning of CA1 stratum radiatum samples. The air and netsurfaces are labeled. A, A hippocampal slice, depicting the Schaffer collateral of a CA3 pyramidal neuron projecting to the apical dendrites of a pyramidal neuron in CA1 stratum radiatum. After fixation, the slice was trimmed initially to leave just the central part of area CA1 (bold outline). DG, Dentate gyrus; Sub, subiculum. B, Higher power view of the trimmed area of CA1, showing pyramidal neurons in stratum pyramidale (SP) and their apical dendrites, which are cross-sectioned in the middle third of stratum radiatum (bold outline). C, Thick and thin sections of the block face, spanning the entire thickness of the slice, were examined to ascertain excellent tissue preservation and to determine the optimal level for taking serial thin sections. Then a right-angled trapezoid (bold outline) for serial thin sectioning was created at that level by trimming away surrounding tissue. D, On each serial thin section, micrographs were taken of the same region (bold outline).E, The resulting stack of serial micrographs totaled 107–109 images, with the dimensions indicated. F, The triangulation method used to measure lengths of axons. Thepoints at which the axons exited the stack of images, labeled A and E, and crossed the middle, labeled C, were marked. On overlays, the distances in the x–y plane between the exit points and the middle point were measured (line segments AB andCD). The z-axis differences between the points (line segments BC and DE) were calculated from the measured average section thickness and the number of intervening sections. The sum of the calculated hypotenuses (line segments AC and CE) gave the total length of the axon segment.

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    Fig. 2.

    Ultrastructural features of CA3 varicosities and axons in stratum radiatum of area CA1. A, Synaptic bouton synapsing with a dendritic spine. B, A dendrite with two spines receiving input from two boutons, including one MSB. The MSB contained a mitochondrion in nearby sections (data not shown).C, Example of an MSB, with a presynaptic mitochondrion. Inspection of adjacent sections revealed a third PSD. D, Several boutons, including an MSB and SSB. The MSB, but not the SSB, contained out-of-plane mitochondria. E, Longitudinally sectioned axon with two boutons, neither of which had additional PSDs or mitochondria in adjacent images. F, Longitudinally sectioned axon. A mitochondrion occupied the right, but not the left, bouton when it was examined three-dimensionally.G, A varicosity occupied by a single mitochondrion but not associated with PSDs or vesicles. Note that the images shown in the subsequent figures are from different axons. den, Dendritic shaft; mito, mitochondria; MSB, multiple-synapse bouton; PSD, postsynaptic density,filled triangles in B andC; SSB, single-synapse bouton;shaft, axonal shaft (arrows);var, axonal varicosity; ves, vesicles. Scale bar, 1.0 μm.

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    Fig. 3.

    Left, Full-field view of a representative micrograph from the stack of images used for three-dimensional reconstructions. The shaft and two varicosities (var) of an axon are indicated. Right, Eight reconstructed axons from series LMTN, at the same scale as the micrograph. Some axons extend beyond the area of the micrograph because of the three-dimensional perspective. The axons travel in many different directions, rather than parallel to each other. Scale bar, 1.0 μm.

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    Fig. 4.

    The membrane contours for 11 reconstructed axon segments, labeled A–K, including eight from series LMTN and three from ZNQB. Axon segments were rotated from their various native positions, as seen in Figure 3, into uniform orientation.

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    Fig. 5.

    The PSDs (red), vesicles, and mitochondria (speckled, light blue) for the same set of 11 reconstructed axon segments that are shown in Figure4. When they are photocopied, PSDs appear relatively smooth and black, whereas mitochondria are speckled and lighter.

  • Fig. 6.
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    Fig. 6.

    Graph of measured lengths versus volumes for axonal shafts (filled circles) and varicosities (open circles). The dotted linerepresents the theoretical length–volume relationship for spherical varicosities; i.e., volume = (4/3) πr3, where r = (varicosity length)/2. Both shafts and varicosities are essentially tubular.

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    Table 1.

    Three-dimensional inspective analysis of axons

    FeatureTotalAverage1-aRange
    Axon segment length (n = 75)674 μm9.1 ± 2.0 μm4.0–12.8 μm
    Varicosities/axon segment224/753.0 ± 1.40–6
    Intervaricosity spacing674 μm/2243.0 μmfrom 1.2 to >7 μmc
    PSDs/varicosityb206/1891.1 ± 0.70–4
    Mitochondria/varicosityb95/1890.5 ± 0.60–3
    Mitochondria/axon segment95/751.3 ± 1.00–4
    • ↵F1-a All data here and elsewhere are given as mean ± SD. bBased on numbers of complete varicosities (see Results). cFor spacings >7 μm, the axon segment left the image stack before another varicosity was observed.

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    Table 2.

    Varicosities tabulated by content of PSDs and mitochondria

    Number of PSDsTotalVaricosities (%)
    ZeroOneTwoThreeFour
    Zero482141–10153
    Number of mitochondriaOne204414318243
    Two131––5∼3
    Three–––1–1<1
    Total251292951189
    Varicosities (%)136815∼3<1100
    PSDs2-a(%)63287∼2
    • ↵F2-a The last line gives the numbers of PSDs expressed as a percentage of all PSDs. All other values are expressed as total numbers or percentages of all varicosities.

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    Table 3.

    Three-dimensional reconstructive analysis of axons

    FeatureTotalAverage3-aRange
    Axon segments119.7  ± 2.5 μm5.5  ± 13.7 μm
    Axonal shafts:46
     Length1.36  ± 1.16 μm0.06–4.04 μm
     Volume0.032  ± 0.038 μm30.002–0.194 μm3
     Diameter0.17  ± 0.04 μm0.11–0.30 μm
    Axonal varicosities: 41
     Length1.09  ± 0.68 μm0.28–2.97 μm
     Volume0.125  ± 0.144 μm30.011–0.572 μm3
     Diameter0.40  ± 0.13 μm0.19–0.69 μm
    PSD areas420.026  ± 0.026 μm20.005–14l μm2
    Vesicles (per varicosity)5454156  ± 1731–688
    Mitochondrial volumes180.024  ± 0.014 μm30.006–0.053 μm3
    • ↵F3-a All data here and elsewhere are given as mean ± SD.

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The Journal of Neuroscience: 18 (20)
Journal of Neuroscience
Vol. 18, Issue 20
15 Oct 1998
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Three-Dimensional Structure and Composition of CA3→CA1 Axons in Rat Hippocampal Slices: Implications for Presynaptic Connectivity and Compartmentalization
Gordon M. G. Shepherd, Kristen M. Harris
Journal of Neuroscience 15 October 1998, 18 (20) 8300-8310; DOI: 10.1523/JNEUROSCI.18-20-08300.1998

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Three-Dimensional Structure and Composition of CA3→CA1 Axons in Rat Hippocampal Slices: Implications for Presynaptic Connectivity and Compartmentalization
Gordon M. G. Shepherd, Kristen M. Harris
Journal of Neuroscience 15 October 1998, 18 (20) 8300-8310; DOI: 10.1523/JNEUROSCI.18-20-08300.1998
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Keywords

  • CA3
  • CA1
  • pyramidal neuron
  • Schaffer collaterals
  • boutons en passant
  • axonal varicosities
  • presynaptic terminal
  • postsynaptic density
  • synaptic vesicles
  • mitochondria
  • ultrastructure

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