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mRNA Expression Analysis of Tissue Sections and Single Cells

James Eberwine, Janet Estee Kacharmina, Christine Andrews, Kevin Miyashiro, Tracy McIntosh, Kevin Becker, Tanya Barrett, Dave Hinkle, Gersham Dent and Paolo Marciano
Journal of Neuroscience 1 November 2001, 21 (21) 8310-8314; https://doi.org/10.1523/JNEUROSCI.21-21-08310.2001
James Eberwine
1Departments of Pharmacology and Psychiatry,
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Janet Estee Kacharmina
1Departments of Pharmacology and Psychiatry,
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Christine Andrews
1Departments of Pharmacology and Psychiatry,
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Kevin Miyashiro
1Departments of Pharmacology and Psychiatry,
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Tracy McIntosh
2Neurosurgery, and
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Kevin Becker
4DNA Array Unit, Gerontology Research Center, National Institute on Aging, National Institutes of Health, Baltimore, Maryland 21224
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Tanya Barrett
4DNA Array Unit, Gerontology Research Center, National Institute on Aging, National Institutes of Health, Baltimore, Maryland 21224
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Dave Hinkle
1Departments of Pharmacology and Psychiatry,
3Neurology, University of Pennsylvania Medical Center, Philadelphia, Pennsylvania 19104, and
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Gersham Dent
1Departments of Pharmacology and Psychiatry,
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Paolo Marciano
2Neurosurgery, and
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    Fig. 1.

    Use of DNA arrays to examine dendrite molecular biology. A schematizes the harvesting of hippocampal tissue for use in isolation of polysomes and the array result.B shows the harvesting of dendrites and a cell soma (indicated by arrows) using a microelectrode as a scalpel. After DHPG treatment, the dendrites are microdissected and an aRNA probe is synthesized; this probe was used to probe a homemade macroarray shown in B.

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    Fig. 2.

    Microdissection of the mouse amygdala and macroarray analysis of subregions. Sections through the mouse brain were stained with cresyl violet to visualize subregions of the amygdala for dissection. Neuroarray hybridization results are shown for the basolateral and central nuclei. Arrows highlight cDNAs for which mRNA abundances differ between basolateral and control nuclei.

  • Fig. 3.
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    Fig. 3.

    mRNA expression analysis of dying cells in traumatic brain injury. The arrows in A show a cell of the CA3 region of the hippocampus that is caspase-3-positive and TUNEL-positive after TBI. aRNA probes were fluorescently labeled and applied to an Incyte (Palo Alto, CA) Gem microarray, a portion of which is shown in B. The scattergram of these array results is shown in C.

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The Journal of Neuroscience: 21 (21)
Journal of Neuroscience
Vol. 21, Issue 21
1 Nov 2001
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mRNA Expression Analysis of Tissue Sections and Single Cells
James Eberwine, Janet Estee Kacharmina, Christine Andrews, Kevin Miyashiro, Tracy McIntosh, Kevin Becker, Tanya Barrett, Dave Hinkle, Gersham Dent, Paolo Marciano
Journal of Neuroscience 1 November 2001, 21 (21) 8310-8314; DOI: 10.1523/JNEUROSCI.21-21-08310.2001

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mRNA Expression Analysis of Tissue Sections and Single Cells
James Eberwine, Janet Estee Kacharmina, Christine Andrews, Kevin Miyashiro, Tracy McIntosh, Kevin Becker, Tanya Barrett, Dave Hinkle, Gersham Dent, Paolo Marciano
Journal of Neuroscience 1 November 2001, 21 (21) 8310-8314; DOI: 10.1523/JNEUROSCI.21-21-08310.2001
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