Abstract
The lifetimes of activated postsynaptic receptor channels contribute to the efficiency of synaptic transmission. Here we show that structural differences within the interface dividing extracellular and transmembrane domains of homomeric α7 and 5-HT3A receptors account for the large differences in open-channel lifetime and time of desensitization onset between these contrasting members of the Cys-loop receptor superfamily. For α7 receptors, agonist-evoked single-channel currents appear mainly as isolated brief openings (τo = 0.35 ms), whereas macroscopic currents after a step pulse of agonist desensitize rapidly (τd = 0.4 ms). In contrast for 5-HT3A receptors, agonist-evoked single-channel currents appear as clusters of many long openings in quick succession (τcluster = 1.2 s), whereas macroscopic currents desensitize slowly (τd = 1.1 s). A chimeric α7-5HT3A receptor exhibits functional properties intermediate between those of the parent receptors, but the functional signatures of each parent are reconstituted after substituting the major loops within the interface of the extracellular and transmembrane domains from the corresponding parent receptor. Furthermore, these structural loops contribute to open-channel lifetime and time of desensitization onset in a nonadditive manner. The results suggest that desensitization is the major determinant of the lifetimes of activated α7 and 5-HT3A receptors and that functional differences between the two receptors arise primarily through structural differences at the interface between extracellular and transmembrane domains.
Introduction
Whether a postsynaptic response triggers an action potential depends on the response amplitude and lifetime. If the amplitude is low, cable properties of the cell will attenuate the response below the action potential threshold, whereas if the lifetime is brief, the cell capacitance will reduce the response amplitude. Response amplitude depends on the number, probability of opening, and conductance of neurotransmitter-activated channels, whereas response lifetime depends on the stability of the open channel together with the probability the channel will reopen after a closing. At the motor synapse, nerve-released ACh rises and falls in a submillisecond pulse, and the response lifetime is dictated by the rates of channel closing (Magleby and Stevens, 1972), channel opening, and ACh dissociation (Colquhoun and Sakmann, 1981); desensitization does not contribute to open-channel lifetime because it develops after tens of milliseconds to seconds of agonist exposure (Katz and Thesleff, 1957; Dilger and Liu, 1992). However, for AMPA receptors, the postsynaptic response and desensitization develop on similar timescales (Jones and Westbrook, 1996). Thus, among different classes of synaptic receptors, diverging mechanisms determine open-channel lifetime.
Receptors of the Cys-loop superfamily comprise a major class of ligand-coupled ion channels (Lester et al., 2004; Sine and Engel, 2006). They contain five subunits, each containing a signature sequence of 13 residues flanked by cysteine residues that form a loop at the junction of the binding and pore domains. Cys-loop receptors assemble from five copies of one subunit, forming homomeric receptors, or from several types of subunits, forming heteromeric receptors. The ancestral Cys-loop receptor was likely homomeric, suggesting that present day homomeric receptors are good models for probing structure–function relationships.
The agonist binding site of Cys-loop receptors projects into the synaptic cleft, whereas the region that gates ion flow localizes within the membrane (Unwin, 2005). Communication over the 50 Å separating the two regions is thus central to the function of Cys-loop receptors. To date, three distinct parts of the receptor have been shown to relay agonist binding to the channel. They include a hairpin structure at the binding site called the C-loop (Mukhtasimova et al., 2005), residues spanning subunit interfaces (Mukhtasimova and Sine, 2007), a network of loops at the junction of the extracellular and transmembrane domains (Kash et al., 2003; Bouzat et al., 2004; Chakrapani et al., 2004; Grutter et al., 2005; Lee and Sine, 2005; Lummis et al., 2005; Reeves et al., 2005; Xiu et al., 2005; Castillo et al., 2006; Mercado and Czajkowski, 2006; Gee et al., 2007; Jha et al., 2007). The interface dividing extracellular and transmembrane domains has attracted attention because it is a structural transition zone in which β-sheets from the binding domain merge with α-helices from the pore (see Fig. 1). Within this zone, several loops form a network that relays structural changes from the binding site toward the pore.
To understand structural and mechanistic determinants of synaptic responses mediated by homomeric Cys-loop receptors, we measured single-channel and macroscopic currents through α7 and serotonin type 3A (5-HT3A) receptors. Although homologous, these receptors diverge functionally, offering the opportunity to delineate structure–function relationships by generating chimeras. By substituting loops within the interface dividing extracellular and transmembrane domains of α7 and 5-HT3A receptors, we find that the interface governs the lifetime of the open channel and rate of desensitization.
Materials and Methods
Site-directed mutagenesis and expression of receptors.
Mutant and chimeric subunit cDNAs (Fig. 1, Table 1) were constructed using the QuikChange Site-Directed Mutagenesis kit (Stratagene) and were confirmed by sequencing the entire coding region. The α7-5HT3A chimeric subunit used here differs by one residue from that described previously (Quiram and Sine, 1998; Rayes et al., 2005). The sequence at the chimeric junction is PYPDVTFTVIIR, in which the first nine residues are from human α7 and the last three are from mouse 5-HT3A. The difference is the underlined Val, which was Ile previously. The high-conductance forms of the mouse 5-HT3A and α7-5HT3A receptors were constructed as described previously (Bouzat et al., 2004; Rayes et al., 2005). Briefly, three arginine residues responsible for low conductance of receptors containing the 5-HT3A pore region were mutated as follows: R432Q, R436D, and R440A (Kelley et al., 2003). BOSC 23 cells were transfected with the receptor subunit cDNAs using calcium phosphate precipitation, as described previously (Bouzat et al., 1994, 2000, 2002). To promote receptor expression on the cell surface, the human α7 cDNA was cotransfected with cDNA encoding Ric-3 (Williams et al., 2005), which was generously provided by Dr. William Green (University of Chicago, Chicago, IL). A plasmid encoding green fluorescent protein was included in all transfections to allow identification of transfected cells under fluorescence optics. Cells were used for single-channel and macroscopic current measurements 1 or 2 d after transfection.
Steady-state ACh binding.
Transfected cells were harvested by gentle agitation in PBS, centrifuged at 1000 × g for 1 min, and resuspended in potassium Ringer's solution (140 mm KCl, 5.4 mm NaCl, 1.8 mm CaCl2, 1.7 mm MgCl2, 25 mm HEPES, and 30 mg/L bovine serum albumin, adjusted to pH 7.4 with 10–11 mm NaOH). Agonist binding was determined by competition of specified concentrations of ACh against the initial rate of [125I]α-bungarotoxin (α-BTX) binding as described previously (Sine et al., 1995a). The total number of binding sites was determined by incubating cells with 25 nm [125I]α-BTX for 1 h and subtracting a blank determined in the presence of 1 mm d-tubocurarine. After computing fractional occupancy from the initial rates of toxin binding (Sine and Taylor, 1979), the following equation was fitted to the data: 1-fractional occupancy = 1- [L]nH/([L]nH + KdnH), where [L] is agonist concentration, Kd is the apparent dissociation constant, and nH is the Hill coefficient.
Patch-clamp recordings.
Single-channel recordings were obtained in the cell-attached patch configuration (Hamill et al., 1981) at a membrane potential of −70 mV and at 20°C, essentially as described previously (Bouzat et al., 2004; Rayes et al., 2005). For the receptor chimeras, all-α7 and CH7 single-channel currents could not be detected from cell-attached patches; thus, unitary currents were recorded from outside-out patches. The bath and pipette solutions contained 140 mm KCl, 5.4 mm NaCl, 0.2 mm CaCl2, and 10 mm HEPES, pH 7.4. Patch pipettes were pulled from 7052 capillary tubes (Garner Glass) and coated with Sylgard (Dow Corning). Single-channel currents were recorded using an Axopatch 200 B patch-clamp amplifier (Molecular Devices), digitized at 5 μs intervals with the PCI-6111E interface (National Instruments), and detected by the half-amplitude threshold criterion using the program TAC 4.0.10 (Bruxton Corporation) at a final bandwidth of 10 kHz (Bouzat et al., 2000; Rayes et al., 2005). Dwell time histograms were plotted using a logarithmic abscissa and a square root ordinate (Sigworth and Sine, 1987) and fitted to the sum of exponential functions by maximum likelihood using the program TACFit (Bruxton Corporation). The duration of the longest component of openings, or apparent mean open time, was used to compare open-channel lifetimes among the chimeras. To estimate kinetic parameters for the α7 receptor, the apparent mean open time was corrected for missed events by dividing the total time corresponding to long-duration openings by the total number of closings associated with these openings.
Bursts were identified as a series of closely spaced openings preceded and followed by closed intervals longer than a specified critical duration (tcrit). This duration was taken as the point of intersection of the first and second briefest components in the closed time histogram. Mean burst duration was determined from the longest component of the open time histogram constructed with an imposed tcrit. Thus, each series of opening events spaced by durations briefer than tcrit was grouped to form a single burst. For receptors in which channel activity appeared in clear clusters, the critical time for defining clusters was set to the intersection of the second and third briefest components, which varied little among recordings. As described for bursts, mean cluster duration was obtained from open time histograms constructed with the corresponding tcrit.
For outside-out patch recordings, the pipette solution contained 134 mm KCl, 5 mm EGTA, 1 mm MgCl2, and 10 mm HEPES, pH 7.3. For recordings from 5-HT3A and chimeric receptors, extracellular solution (ECS) contained 150 mm NaCl, 0.5 mm CaCl2, and 10 mm HEPES, pH 7.3. For recordings from α7 receptors, ECS contained 150 mm NaCl, 1.8 mm CaCl2, 1 mm MgCl2, and 10 mm HEPES, pH 7.3. A series of applications of ECS containing agonist was applied to the patch as described previously (Liu and Dilger, 1991; Spitzmaul et al., 2001). Briefly, the perfusion system consisted of solution reservoirs suspended on a pole for gravity-driven flow, switching valves, a solenoid-driven pinch valve, and two tubes (inner diameter of 0.3 mm) oriented at 90° into the culture dish. One tube contained ECS without agonist and the other contained ECS with agonist. The pipette with the outside-out patch was located within several hundred micrometers of the two output tubes in which streams coming from both tubes would intersect. When the pinch valve was switched, solution flowed from only one side at a time and switched from one side to the other. This perfusion system allowed for a rapid exchange of the solution bathing the patch. The solution exchange time was estimated by stepping the patch held at 0 mV in bath solution and then applying a 500 ms pulse of bath solution diluted 1:2 with water. Typical exchange times ranged from 0.1 to 1 ms.
Macroscopic currents were recorded at a holding potential of −50 mV, filtered at 5 kHz, and digitized at 20 kHz. Data analysis was performed using the IgorPro software (WaveMetrics). Currents from α7-5HT3A chimeras were elicited by 1 mm ACh; at this concentration, open-channel block by ACh is negligible, given the dissociation constant for block of 40 mm for the α7-5HT3A chimera (Rayes et al., 2005).
For recordings from α7 receptors, the ensemble mean current was calculated for 5–10 individual current traces. Current records were aligned at the point at which the current reached 50% of maximum. Because currents through α7 receptors decayed rapidly, the mean decay time constant was the average of 28 individual currents recorded from six different outside-out patches. Current decays were fitted by the following function: I(t) = I0 exp (−t/τd) + I∞, where I0 and I∞ are the peak and the steady-state current values, respectively, and τd is the decay time constant. In the presence of a high concentration of agonist, if the probability of channel opening is high and the recovery rate from desensitization in the presence of agonist is relatively slow (estimated from the size of the steady state current), the value of 1/τd approaches the rate constant for entering the desensitized state.
Single-channel and macroscopic currents through 5-HT3A receptors were elicited by 3 μm 5-HT. This concentration is greater than the EC50 determined from the relationship between the peak current and agonist concentration (EC50 = 2.7 ± 0.5 μm) (Mott et al., 2001; Gumilar and Bouzat, 2008). Current decays were fitted by a single-exponential component, whereas at higher 5-HT concentrations two exponential components were required (Mott et al., 2001) (supplemental Fig. 1, available at www.jneurosci.org as supplemental material). The 5-HT concentration of 3 μm was also chosen because higher concentrations decreased the mean open time (supplemental Fig. 1, available at www.jneurosci.org as supplemental material), in a manner consistent with open-channel block.
Macroscopic currents were simulated using QuB software (QUB Suite, State University of New York, Buffalo, NY) on the basis of Scheme 1 (see Results). For the simulations, we varied the channel opening rate, β, from 5000 to 20,000 s−1. The simulated currents were analyzed with SigmaPlot 7.101.
For α7 receptors, recovery from desensitization was determined by recording whole-cell currents at an applied potential of −50 mV, and a 150 ms step pulse of 1 mm ACh was applied to the cells. After removal of ACh, a second pulse of 1 mm ACh was applied at intervals between 0.25 and 6 s after the end of the first ACh pulse. The fractional recovery of the current elicited by the second pulse was plotted against the interpulse interval.
Results
Diverging functional properties of homomeric α7 and 5-HT3A receptors
We transfected BOSC 23 cells with cDNAs encoding homomeric α7 or 5-HT3A receptors, formed cell-free outside-out patches, and recorded macroscopic currents elicited by a 500 ms step pulse of agonist (Fig. 2). High concentrations of agonist were chosen to simplify subsequent mechanistic analyses, but, to avoid channel block by the agonists, concentrations greater than the EC50 for activation but below the threshold for blocking were used (Rayes et al., 2005) (supplemental Fig. 1, available at www.jneurosci.org as supplemental material). Macroscopic current through α7 receptors decays rapidly from its peak (τd ∼0.4 ms), whereas current through 5-HT3A receptors decays slowly (τd ∼1 s). In the presence of high agonist concentration and if the probability of channel opening is high and the rate of recovery from desensitization in the presence of agonist is slow, the value of 1/τd approaches the desensitization rate. Because 5-HT3A receptor channels are blocked by concentrations of 5-HT greater than the EC50, a saturating concentration of 5-HT3A could not be used; thus, the rate of desensitization measured at the EC50 represents a lower bound. However, experiments in the presence of a saturating concentration of 5-HT show two exponential components, the slowest of which is only twofold faster than that in the presence of 3 μm 5-HT (supplemental Fig. 1, available at www.jneurosci.org as supplemental material). Thus, α7 desensitize rapidly, whereas 5-HT3A receptors desensitize slowly.
To determine the microscopic origin of the diverging kinetics of the two types of receptors, we recorded single-channel currents evoked by the same high concentrations of agonist. For α7 receptors, channel openings appear as single brief pulses flanked by long closed periods or less often as several pulses in quick succession (Figs. 2, 3). In contrast for 5-HT3A receptors, openings are long and appear as many openings in quick succession (Figs. 2, 3). Thus, α7 receptors activate in episodes of one or a few brief openings and desensitize rapidly, whereas 5-HT3A receptors activate in episodes of many long openings and desensitize slowly. The diverging kinetic profiles of the two types of receptors suggest that, at a synapse in which the pulse of neurotransmitter is transient, responses of α7 receptors are brief whereas responses of 5-HT3A receptors are prolonged, whereas for both receptors the lifetimes of the elementary responses are determined mainly by desensitization.
Single-channel dwell time histograms further distinguish the two types of receptors (Fig. 3). For α7 receptors, the distribution of open dwell times is described by the sum of two exponential components; openings within the brief component occur in isolation, whereas those within the long component occur both in isolation and within episodes of closely spaced openings called bursts. The distribution of closed dwell times is described by the sum of three or four exponential components; the briefest component corresponds to closings within bursts, whereas the longer components correspond to closings between independent openings, bursts, or both. To recognize bursts and quantify their durations, a critical closed time is defined as the point of intersection between the briefest and succeeding components, and openings separated by closings briefer than this time constitute a burst. Comparison of burst and open duration histograms reveals that, on forming bursts, the mean duration of the brief component is unchanged, but that of the long component increases (Fig. 3). Events within the slowest component of bursts whose mean durations overlap with those of openings likely consist of single opening episodes but are nevertheless considered bursts.
For 5-HT3A receptors, the distribution of open dwell times is described by the sum of three exponential components (Fig. 3). Openings within the long component again appear as bursts of closely spaced openings, but bursts coalesce into higher-order pulse sequences called clusters; openings within the two brief components occur both within clusters and in isolation. The distribution of closed dwell times is described by the sum of five exponential components; the brief component dominates the distribution and corresponds to closings within intracluster bursts, the succeeding component corresponds to closings between intracluster bursts, whereas the remaining long components correspond to closings between independent clusters, isolated openings, or both. To define clusters, a critical closed time is defined as the point of intersection of the second briefest and the succeeding components, and openings separated by closings shorter than this time constitute a cluster. Comparison of cluster and open duration histograms reveals that, on forming clusters, the mean duration of the brief and intermediate components are unchanged, but the mean duration of the long component increases (Fig. 3). For 5-HT3A receptors, openings appear in clusters even at the lowest 5-HT concentration that elicits detectable single-channel openings (supplemental Fig. 1, available at www.jneurosci.org as supplemental material), whereas for α7 receptors, openings do not appear in clusters at any ACh concentration (Fig. 3).
To quantify the kinetic signatures of α7 and 5-HT3A receptors, we computed the mean durations of openings, bursts, and clusters, and the time constant for desensitization (Fig. 4). For α7 receptors, the mean duration of long openings, the mean duration of bursts, and the time constant for desensitization are all similar. The mean burst duration of 0.33 ms is very close to the measured time constant for desensitization onset of 0.4 ms; because most bursts consist of a single opening, desensitization is the predominant pathway for terminating a channel opening episode. In contrast for 5-HT3A receptors, the mean duration of long openings is much briefer than either the mean cluster duration or the time constant for desensitization. The mean cluster duration is, however, similar to the time constant for desensitization, indicating that, for 5-HT3A receptors, clusters are the single-channel counterpart of macroscopic desensitization. For the muscle ACh receptor (AChR) in which the probability of channel opening within a cluster is close to 1, as observed here for clusters elicited by 5-HT3A receptors, cluster duration depends on the rate of desensitization from the open state (Auerbach and Akk, 1998).
Structural bases for the diverging functional properties of α7 and 5-HT3A receptors
To identify structural underpinnings of the diverging open-channel lifetimes and rates of desensitization for α7 and 5-HT3A receptors, we generated a chimeric receptor in which the ligand binding domain contained α7 sequence and the pore and cytoplasmic domains contained 5-HT3A sequence (Rayes et al., 2005). After transfecting the cDNA encoding the α7-5HT3A chimera into BOSC 23 cells, we formed outside-out patches, applied a 500 ms pulse of a saturating concentration of ACh, and recorded macroscopic currents. After a rapid rise, the currents decay at a rate intermediate between that for the two parent receptors (Fig. 2, Table 2). In cell-attached patch recordings at a high concentration of ACh, single-channel openings from the α7-5HT3A chimera appear as isolated brief openings, bursts of several long openings, or bursts of brief and long openings (Fig. 2). Open time histograms are described by the sum of three exponential components, the longest of which is intermediate between the long components from the two parent receptors (Fig. 2, Table 2) (Rayes et al., 2005). Thus, for the α7-5HT3A chimeric receptor, macroscopic and single-channel currents are intermediate between those of α7 and 5-HT3A receptors.
Previous studies showed that the structural transition zone separating ligand binding and pore domains is crucial for coupling agonist binding to channel gating (Fig. 1) (Kash et al., 2003; Bouzat et al., 2004; Chakrapani et al., 2004; Grutter et al., 2005; Lee and Sine, 2005; Lummis et al., 2005; Reeves et al., 2005; Xiu et al., 2005; Mercado and Czajkowski, 2006; Castillo et al., 2006; Gee et al., 2007). Furthermore, the functional contribution of this region depends on structural matching of residues projecting from the two domains (Bouzat et al., 2004). Because the coupling region of the α7-5HT3A chimera contains residues from both α7 and 5-HT3A receptors, we hypothesized that the intermediate kinetic profile of the chimera arises from structural mismatching among incongruous residues in the interdomain loops.
To test this hypothesis, we generated two additional chimeras starting from the α7-5HT3A chimera: an all-5HT3A chimera in which major loops within the interface dividing extracellular and transmembrane domains contain residues solely from the 5-HT3A receptor and an all-α7 chimera in which these loops contain residues solely from the α7 receptor. Residue substitutions were generated in the following structural regions: the Cys loop, the β8–β9 loop, the M2–M3 loop, the C terminus of β-strand 10, and the N terminus of M1 (Fig. 1, Table 1); the amino acid sequence of the β1–β2 loop is identical between α7 and 5-HT3A receptors and thus was not modified.
For the all-5HT3A chimera, the kinetics of macroscopic and single-channel currents approach those of the 5-HT3A receptor (Fig. 2, Table 2), exhibiting slow desensitization and clusters of many long single-channel openings. The distribution of open times is described by the sum of three exponential components, similar to that of 5-HT3A receptors (Table 2). The distribution of closed times is described by the sum of five exponential components and contains a major brief component of closings within intracluster bursts, similar to the 5-HT3A receptor. Unlike the 5-HT3A receptor, however, the all-5HT3A chimera exhibited brief (τo = 70 μs) and intermediate (τo = 620 μs) openings in the absence of ACh (supplemental Fig. 2, available at www.jneurosci.org as supplemental material), indicating the equilibrium constant for spontaneous channel gating is greater for the chimera than for either parent receptor.
Analogously for the all-α7 chimera, the kinetics of macroscopic and single-channel currents approach those of the α7 receptor, exhibiting fast desensitization and brief channel openings (Fig. 2). Unlike the all-5HT3A chimera, macroscopic currents were small and difficult to detect. Because the total number of α-BTX binding sites (data not shown) and the unitary current amplitude (Fig. 2) are similar to those of the template α7-5HT3A chimera, the probability of channel opening may be low for this chimera.
For the all-α7 chimera, the distribution of open times is described by the sum of two exponential components, the longest of which is briefer than that for the α7-5HT3A chimera but longer than that for the native α7 receptor. Closed time histograms are described by the sum of several exponential components, but the distribution was likely altered by the need to modify the recording method. For the all-α7 chimera in the cell-attached mode, channel openings were too infrequent to obtain statistically meaningful dwell time distributions, so we recorded currents from outside-out patches to which a step pulse of agonist was applied; after decay of the initial macroscopic current, single-channel openings could be discerned. However, the long closed intervals between independent openings increased as the recordings progressed, thus altering the closed time distribution. Also, channel activity decayed rapidly and almost disappeared in <10 s in the presence of 1 mm ACh. Therefore, data from several applications of ACh to the same patch were used to obtain dwell time histograms. Nevertheless, within bursts, the open and closed dwell times should not be affected.
We also measured competition of ACh against the initial rate of [125I]α-BTX binding to intact cells expressing the all-5HT3A and all-α7 chimeras. The apparent Kd values for ACh of both chimeras were much lower than that of the template α7-5HT3A chimera (Table 2), which is expected because open-channel lifetime is enhanced in the all-5HT3A chimera and desensitization is enhanced in the all-α7 chimera.
To compare the kinetic signatures of the all-5HT3A and all-α7 chimeras to those of the parent receptors, we computed the mean durations of openings, bursts, and clusters, and the current decay time constant (Fig. 4). For the all-5HT3A chimera, the four parameters show a pattern similar to that of the 5-HT3A receptor: the mean duration of long openings is much briefer than both the mean duration of clusters and the time constant of macroscopic current decay. As observed for the 5-HT3A receptor, mean cluster duration and time constant of current decay were similar. For the all-α7 chimera, openings do not appear in clusters, and the mean open and burst durations are similar, as observed for the parent α7 receptor. However, for the all-α7 chimera, the current decay time constant is approximately twice the mean burst duration, perhaps because the currents were small and the modified recording method altered the closed time distribution and thus assignment of the critical closed time used to construct bursts. Quantitative differences in time constants between the chimeras and parent receptors are expected because the template used to generate the chimeras contains α7 sequence in the ligand binding domain and 5-HT3A sequence in the pore and cytoplasmic domains. Nevertheless, substitution of residues from the parent receptors into the extracellular–transmembrane domain interface of the α7-5HT3A chimera reconstitutes the fundamental activation and desensitization properties of the parent homomeric receptors. Thus, residues at the confluence of the ligand binding and pore domains are major determinants of the diverging open-channel lifetimes and rates of desensitization of homomeric α7 and 5-HT3A receptors.
Contributions of loops at the extracellular–transmembrane domain interface to gating kinetics and response termination pathway
We next sought to determine which loops within the extracellular–transmembrane domain interface contribute to the diverging open-channel lifetimes and rates of desensitization of 5-HT3A and α7 receptors. Starting with the α7-5HT3A chimera, we substituted 5-HT3A for α7 sequences into either the Cys or the β8–β9 loops, forming chimeras CH1 and CH2, respectively. For both CH1 and CH2, macroscopic currents elicited by a step pulse of a high concentration of ACh rise rapidly and decay slowly, whereas the corresponding single-channel currents appear as clusters of long openings in quick succession (Fig. 5, Table 2). Dwell time histograms for CH1 and CH2 are similar, with the longest component of openings similar to the longest component of openings for the all-5HT3A chimera. Thus, CH1 and CH2 exhibit functional signatures approaching that of the all-5HT3A chimera, showing that the individual contributions of the Cys and β8–β9 loops are approximately equal but not additive.
Chimeras CH1 and CH2 nevertheless differ functionally from the all-5HT3A chimera; both chimeras show lower apparent affinity for ACh, higher concentrations of ACh are required to elicit single-channel currents, and spontaneous single-channel openings are not observed (Table 2). Thus, 5-HT3A sequences are required in both the Cys and β8–β9 loops to achieve the complete functional signature of the all-5HT3A chimera.
To assess the contribution of the N terminus of M1, we again started with the α7-5HT3A chimera and substituted α7 for 5-HT3A sequences in this region. The resulting chimera, CH3, expressed in robust quantities on the cell surface (84 ± 7% relative to the α7-5HT3A chimera), but ACh did not elicit single-channel or macroscopic currents (20 whole-cell recordings from cells confirmed to be transfected) (Fig. 5). Measurements of competition of ACh against the initial rate of [125I]α-BTX binding revealed an apparent Kd similar to that of the starting α7-5HT3A chimera (Table 2). A second chimera, CH4, containing α7 substitutions in both M1 and the contiguous β-strand 10, expressed on the cell surface (47 ± 18% relative to the α7-5HT3A chimera) and bound ACh with an apparent Kd similar to that of the α7-5HT3A chimera (Table 2), but again ACh did not elicit single-channel or macroscopic currents (30 whole-cell recordings from cells confirmed to be transfected). In both CH3 and CH4, the M2–M3 loop contains 5-HT3A sequences, whereas the N terminus of M1 contains α7 sequences, suggesting that a structural mismatch between these two regions can functionally decouple the ligand binding and pore domains.
To further examine functional consequences of mismatches between the N terminus of M1 and the M2–M3 loop, we substituted 5-HT3A sequences into M1 and α7 sequences into M2–M3, thus reversing the mismatch in the functionally silent chimeras CH3 and CH4. The resulting chimeras, CH5 and CH6, exhibit robust macroscopic and single-channel currents in response to ACh and display functional signatures approaching that of the all-5HT3A chimera; after a pulse of ACh to outside-out patches, the currents decay slowly from their peaks, and, in cell attached patches, single-channel currents appear as clusters of many long openings flanked by brief closings (Fig. 5, Table 2). For chimeras CH5 and CH6, dwell time histograms and apparent affinity for ACh approach those for the all-5HT3A chimera, and single-channel currents in the absence of ACh were observed, similar to the all-5HT3A chimera. Thus, the results from chimeras CH3 through CH6 reveal that the combination of sequences of M1 and the M2–M3 loop can affect coupling of agonist binding to channel gating and that the presence of 5-HT3A sequence in M1 confers long open-channel lifetime and slow rate of desensitization, although the M2–M3 loop contains α7 sequences.
Remarkably, substitution of α7 sequence into M1 of CH6 to form CH7, an exchange of only five residues (Table 1), converts the slow kinetics characteristic of 5-HT3A receptors to fast kinetics characteristic of α7 receptors and the all-α7 chimera (Fig. 5, Table 2). Thus, four discontinuous regions of the primary sequence, the Cys loop, β8–β9 loop, M2–M3 loop, and N terminus of M1, converge at the interface dividing extracellular, and transmembrane domains contribute to coupling between the binding site and the pore, open-channel lifetime, and the rate of desensitization.
Open-channel lifetime of α7 receptors is governed by desensitization
In the presence of a high concentration of ACh, α7 receptors activate predominantly as single brief openings flanked by long closed periods (Fig. 2). This simple temporal pattern of current pulses has several possible explanations: the rate constant for channel opening could be slow, ACh could associate slowly, dissociate rapidly, or both, or desensitization could be unusually rapid. In cell-free outside-out patches, macroscopic currents through α7 receptors reach a peak within the solution exchange time of <1 ms (Fig. 6b), eliminating a slow rate of channel opening as the explanation. To test for a contribution of ACh association and dissociation, we recorded single-channel currents in the presence of low and high ACh concentrations, reasoning that, over the range of ACh concentrations that elicit single-channel currents, contributions of ACh association and dissociation should affect the temporal pattern of the unitary current pulses. However, the dwell time distributions do not change from 10 to 100 μm ACh, showing no evidence for contributions of ACh association or dissociation to the single-channel kinetics (Fig. 6a). Finally, mean channel open time, mean burst duration, and time constant for desensitization are all similar (Fig. 4), indicating that rapid desensitization is the most likely explanation for the novel single-channel kinetics of α7 receptors.
To gain quantitative insight into the open-channel lifetime of α7 receptors, we analyzed the kinetics of bursts according to the following: where C is the fully liganded closed state, O is the open state, and D is the desensitized state (Auerbach and Akk, 1998; Mike et al., 2000). States C and D are both nonconducting but are kinetically distinguishable. Fully liganded closed receptors open with rate constant β, whereas open receptors either close with rate constant α or desensitize with rate constant d+. Because the concentration of agonist is saturating, we can assume all transitions away from C regenerate O. Furthermore, because D is a long-lived state, dwells in C are brief compared with dwells in D, and transitions from D to O can be neglected. Thus, in the presence of a saturating concentration of ACh, Scheme 1 predicts that the number of closings per burst is α/d+, the mean duration of openings within bursts is (α + d+)−1, and the mean burst duration is approximately (1 + α/d+)/(α + d+).
Thus, for α7 receptors, we quantified the number of closings per burst (0.30 ± 0.19) and the corrected mean open time of openings within bursts (0.26 ± 0.12 ms) and obtained estimates of α and d+ of 690 ± 300 and 3320 ± 1300 s−1, respectively. The analysis reveals that the rate constant for desensitization, d+, is much greater than the rate constant for channel closing, α. Analysis according to Scheme 1 assumes a single kinetic class of openings within bursts, but our open time histograms show a second component of brief openings. However, bursts contain predominantly long-duration openings because the long-duration component in the open-duration histogram shifts to longer time during formation of bursts, whereas the mean duration of the brief component is unchanged (Fig. 3). Thus, for α7 receptors, the estimated values of α and d+ in Scheme 1 account for the mean duration of bursts of openings. Furthermore, using the fitted values of α and d+ and assuming a rapid rate of channel opening, the simulated macroscopic current mimics the experimental response (Fig. 6b).
Control of open-channel lifetime through desensitization has potential consequences for inter-response latency at the synapse in which the pulse of neurotransmitter is transient. If α7 receptors recover slowly from desensitization, the minimum latency between successive responses would be long. Thus, we measured the time course of recovery from desensitization using a twin-pulse procedure: a pulse of agonist was applied, the agonist was removed, and, after increasing recovery times, a second pulse of agonist was applied. To obtain sufficiently large currents, we performed recovery experiments in the whole-cell recording mode. After a 150 ms desensitizing pulse of ACh, current elicited by the second pulse recovers with a time constant of ∼1 s. We found that currents elicited by the test pulses decayed more slowly in the whole-cell mode than in the outside-out patch mode, likely attributable to differences in the speed and uniformity of exposure of the receptors to the agonist, which may account for variability in reported rates of desensitization for α7 receptors (Gopalakrishnan et al., 1995; Zhang et al., 1996; Liu and Berg, 1999; Mike et al., 2000). Nevertheless, in whole-cell mode, the current reaches a peak in <10 ms and decays by >80% of the original peak during the 150 ms pulse of ACh. Thus, after rapid desensitization of α7 receptors, a latency of several seconds is required to generate another response of full amplitude.
Discussion
We demonstrate diverging open-channel lifetimes and desensitization rates by homomeric α7 and 5-HT3A receptors and show that these differences arise primarily from differences in residues at the confluence of the extracellular and transmembrane domains. Within this region, separate segments of the linear sequence converge to form an intra-subunit network that governs both functional properties in parallel. When the interface contains residues from the α7 receptor, the open-channel lifetime is brief because of unusually rapid formation of a long-lived desensitized state. In contrast, when the interface contains residues from the 5-HT3A receptor, the open-channel lifetime is prolonged, many openings occur in quick succession, and the resulting clusters of openings are long because of slow formation of a desensitized state. The different structural loops at the interface contribute to the functional signature of the receptor in a nonadditive manner, and further, certain combinations of the loops can functionally decouple the binding domain from the pore domain. Thus, in addition to its established role in coupling agonist binding to channel gating (Kash et al., 2003; Bouzat et al., 2004; Chakrapani et al., 2004; Lee and Sine, 2005; Lummis et al., 2005; Reeves et al., 2005; Xiu et al., 2005; Castillo et al., 2006; Mercado and Czajkowski, 2006), the interface dividing extracellular and transmembrane domains can be structurally modified to generate a wide range of open-channel lifetimes and rates of desensitization. Although desensitization is likely an important contributor to synaptic efficacy in normal and pathological conditions, structural bases for desensitization have been particularly elusive (Giniatullin et al., 2005). Our work shows that the interface dividing extracellular and transmembrane domains of homomeric Cys-loop receptors affects open-channel lifetime and rate of desensitization in parallel and that these processes contribute to termination of the synaptic response.
Coupling agonist binding to channel gating likely requires coordinated structural changes among multiple loops at the interface, implying a working assembly in which the loops are structurally compatible. Evidence for structural compatibility of the loops emerged from studies of chimeric receptors in which the extracellular domain was built from ACh binding protein and the transmembrane domain from the 5-HT3A receptor (Bouzat et al., 2004). The requirement for structural compatibility further suggests that the functional contribution of each loop depends on the structures of juxtaposed loops, which was demonstrated by inter-residue energetic coupling in this region of the muscle AChR (Lee and Sine, 2005). Here we show that the functional contributions of the N terminus of M1, the β8–β9 loop, and the Cys loop depend on the structures of the other loops. Additional structures at the periphery of the interfacial region, including the ends of the M3 and M4 α-helices and the C terminus, may potentially contribute to this functional network (Xiu et al., 2005). Whether these additional structures contribute to open-channel lifetime and desensitization represents an important question for future studies.
We find that the β8–β9 and Cys loops contribute to open-channel lifetime and rate of desensitization in a nonadditive manner; substitution of 5-HT3A sequence into either or both loops prolongs the open-channel lifetime and slows desensitization. Because the two loops do not make physical contact, the structural basis for the nonadditive contributions may result from interaction with a structure common to both loops. A good candidate is β-strand 10, which is lodged between the loops and contains the invariant αArg 209 key to the functional linkage between extracellular and transmembrane domains (Lee and Sine, 2005). Thus, the β8–β9 and Cys loops may modulate β-strand 10, which in turn may be decisive in determining open-channel lifetime and rate of desensitization.
Our findings also reveal novel contributions of the N-terminal region of M1. If M1 contains α7 sequence and the M2–M3 loop contains 5-HT3A sequence, the response to agonist is blocked, showing that M1 is selectively permissive for an agonist-mediated response. Conversely, if M1 contains 5-HT3A sequence, a response can be elicited whether the M2–M3 loop contains either α7 or 5-HT3A sequence. Thus, the ability of agonist to elicit a response depends on the combination of the sequences of M1 and the M2–M3 loop. M1 is proximal to the N terminus of the M2–M3 loop (Unwin, 2005), suggesting that the two regions may interact directly. Inspection of the Torpedo AChR structural model reveals subsegments of M1 and the M2–M3 loop in close proximity. Within M1 of α7, this contact region contains the sequence Thr-Leu-Tyr (Table 1), which is selectively permissive for generating a response to agonist, whereas in M1 of 5-HT3A, the contact region contains Pro-Leu-Phe, which is permissive. Within the M2–M3 loop of α7, the contact region contains the sequence Ser-Asp-Ser, which is the only one compatible with the selectively permissive sequence from M1 of α7, although within the M2–M3 loop of 5-HT3A, the contact region contains Ala-Ileu-Gly, which is compatible with either of the M1 sequences. Residues within these regions constitute logical starting points for investigating possible inter-residue interactions that affect the ability of the binding domain to couple to the pore. Alternatively, the different M1 segments may alter the contiguous β-strand 10 and its link to the β1–β2 loop, as suggested above, or possibly they may affect the adjoining M3 domain of the neighboring subunit.
The N terminus of M1 is also decisive in conferring open-channel lifetime and rate of desensitization; if M1 contains the sequence from the 5-HT3A receptor, channel openings are long and desensitization is slow, regardless of whether the M2–M3 sequence is from α7 or 5-HT3A receptors. However, the decisive contribution of 5-HT3A sequences from M1 is not absolute because it can be modulated by neighboring loops; when α7 sequence is present in the Cys loop and β8–β9 loop, as in the starting α7-5HT3A chimera, open-channel lifetime and desensitization rate are intermediate, although 5-HT3A sequence is present in M1. Additional studies are required to determine whether the decisive contribution of the M1 sequence from the 5-HT3A receptor results from direct interaction with the M2–M3 loop or a propagated interaction to the contiguous β-strand 10 or to the neighboring subunit.
We find that structural changes at the interfacial region also produce changes in the apparent Kd for ACh binding. Because the binding measurements are made at steady state, channel gating, desensitization, and ACh affinity for the different functional states all contribute to the apparent Kd. Thus, binding measurements alone give little insight into the origin of a functional change, but they can confirm that a functional change occurred. For example, the all-5HT3A chimera shows significantly enhanced gating, as observed by the high spontaneous activity and the long-duration openings, in line with the large decrease in the apparent Kd relative to the starting α7-5HT3A chimera. Conversely, the all-α7 chimera desensitizes so strongly that single-channel currents could only be recorded in the outside-out patch configuration, which is confirmed by the decrease in Kd relative to that of the starting α7-5HT3A chimera. Finally, binding measurements showed that the CH3 and CH4 chimeras bound ACh with an apparent Kd similar to that of the α7-5HT3A chimera, although ACh failed to evoked single-channel or macroscopic currents. Thus, binding and functional measurements together indicate that, in the context of 5-HT3A sequences in the M2–M3 loop, α7 sequences in M1 decouple binding from gating.
The kinetics of α7 receptors contrast with those of nicotinic receptors at the motor synapse, which in the presence of low concentrations of ACh, exhibit bursts of several openings separated by brief closings. This bursting pattern arises because the rate constant for channel opening is greater than the rate constant for ACh dissociation, enabling reopening of the di-liganded receptor channel (Colquhoun and Sakmann, 1981). Bursts elicited by low ACh concentrations are the single-channel counterpart of endplate currents (EPCs) evoked by nerve-released ACh (Colquhoun and Sakmann, 1985); mean burst duration and the time constant of EPC decay have been shown to be equal (Sine et al., 1995b). Conversely, single-channel currents elicited by high concentrations of ACh occur in clusters of tens to hundreds of channel openings in rapid succession. Each cluster begins when a receptor recovers from the long-lived desensitized state and, in the continued presence of agonist, undergoes repeated cycles of channel closing, agonist dissociation, agonist rebinding, and channel opening until the receptor reenters the desensitized state. Thus, because the rate of desensitization is slow compared with the rate of channel closing, single-channel currents elicited by high ACh concentrations appear in prolonged clusters. For α7 receptors, in contrast, the temporal pattern of single-channel currents does not change from low to high ACh concentrations, and the elementary activation episodes consist primarily of a single opening flanked by long closings. This simple pattern arises because the rate of desensitization is rapid compared with the rate of channel closing, so that repeated cycles of channel closing and reopening are rare. Our estimates of the rates of channel closing and desensitization indicate that approximately three of four channel openings terminate by desensitization rather than by channel closing.
In an alternative arrangement of states from those in Scheme 1, the desensitized closed state D could be connected to the fully liganded closed state C rather than the open state O. Given this alternative, the observed number of brief closings per burst of 0.3 should equal β/d+, where β is the channel opening rate of the fully liganded receptor. Given the measured rate of desensitization for α7 receptors of 2500 s−1, the channel opening rate is predicted to be 750 s−1. However, a lower limit for β is given by the rise time of the current elicited by a saturating concentration of ACh. The measured rise time of 0.15 ms places a lower limit on β of 6667 s−1, which is much greater than the value of 750 s−1 predicted from the kinetics of single-channel currents. Expressed another way, the alternative scheme gives a time constant for desensitization of 0.3 ms if β = 20,000 s−1, α = 3800 s−1, and d+ = 100,000 s−1. However, this set of rate constants predicts a mean duration of brief closings of 8 μs, contrary to the observed 117 μs (Fig. 3). Thus, Scheme 1, in which the desensitized state D is connected to the open state O, best describes the data.
Although 5-HT3A and α7 receptors diverge functionally, they also show functional parallels. The diverging properties include open states with differing stability, closed states differing in number and probability of occurrence, and differing rates of desensitization. Furthermore, Scheme 1, which describes the activation kinetics of α7 receptors in the presence of a saturating concentration of ACh, cannot describe the activation kinetics of 5-HT3A receptors; additional open and closed states are required (Solt et al., 2007). However, the two types of receptors show the functional parallel that the distributions of open, closed, and burst or cluster durations do not depend on agonist concentration. This concentration-independence of single-channel kinetics agrees with the recent findings by Solt et al. (2007), who showed that, for 5-HT3A receptors, the rate of desensitization elicited by a high concentration of 5-HT was similar to the rate of deactivation after a brief pulse of 5-HT. Thus, although the response time courses of α7 and 5-HT3A receptors differ markedly, for both receptors desensitization governs the lifetimes of the elementary activation episodes.
The kinetics of α7-mediated responses described here qualitatively mirrors the kinetics of agonist-mediated responses recorded from hippocampal neurons rich in α7 receptors (Dani et al., 2000; Mike et al., 2000). Similar to α7, desensitization of AMPA receptors is rapid enough to contribute to open-channel lifetime and the decay of the postsynaptic response, and recovery from desensitization is slow enough to affect inter-response latency (Jones and Westbrook, 1996). α7 receptors thus constitute a remarkable extreme of rapid desensitization and slow channel closing; desensitization rate is so rapid that it is the major determinant of the open-channel lifetime (τo = 0.4 ms), and recovery from desensitization is so slow (τrecovery = 1 s) that the inter-response latency is expected to be prolonged. Thus, although α7 receptors act as high-fidelity sensors of ACh concentration, they harbor a built-in filtering mechanism against excessive stimulation.
The interface dividing extracellular and transmembrane domains contains a significant proportion of nonconserved residues, suggesting that different subtypes of Cys-loop receptors use different residue combinations to tailor postsynaptic responses according to physiological needs. Contributions of the β1–β2, Cys, and β8–β9 loops have been documented, but the contribution of the N terminus of M1 and its dependence on the structure of the M2–M3 loop described here are novel. Thus, the four structural regions at the interface dividing extracellular and transmembrane domains form a structural network that determines the lifetime of the activated receptor and thus the strength and inter-response latency of the postsynaptic response.
Footnotes
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This work was supported by National Institutes of Health Grant NS053521 (S.M.S., C.B.) and grants from Universidad Nacional del Sur, Agencia Nacional de Promoción Científica y Tecnológica, Loreal-Unesco, and Consejo Nacional de Investigaciones Científicas y Técnicas Argentina (C.B.). We thank Drs. Hai-Long Wang and Nuriya Mukhtasimova for contributions in the development of this work and Chris Free for technical contributions.
- Correspondence should be addressed to either of the following: Dr. Cecilia Bouzat, Instituto de Investigaciones Bioquímicas, Universidad Nacional del Sur–Consejo Nacional de Investigaciones Científicas y Técnicas, Bahía Blanca 8000, Argentina, inbouzat{at}criba.edu.ar; or Dr. Steven M. Sine, Mayo Clinic College of Medicine, Rochester, MN 55905, sine{at}mayo.edu