Skip to main content

Main menu

  • HOME
  • CONTENT
    • Early Release
    • Featured
    • Current Issue
    • Issue Archive
    • Collections
    • Podcast
  • ALERTS
  • FOR AUTHORS
    • Information for Authors
    • Fees
    • Journal Clubs
    • eLetters
    • Submit
    • Special Collections
  • EDITORIAL BOARD
    • Editorial Board
    • ECR Advisory Board
    • Journal Staff
  • ABOUT
    • Overview
    • Advertise
    • For the Media
    • Rights and Permissions
    • Privacy Policy
    • Feedback
    • Accessibility
  • SUBSCRIBE

User menu

  • Log out
  • Log in
  • My Cart

Search

  • Advanced search
Journal of Neuroscience
  • Log out
  • Log in
  • My Cart
Journal of Neuroscience

Advanced Search

Submit a Manuscript
  • HOME
  • CONTENT
    • Early Release
    • Featured
    • Current Issue
    • Issue Archive
    • Collections
    • Podcast
  • ALERTS
  • FOR AUTHORS
    • Information for Authors
    • Fees
    • Journal Clubs
    • eLetters
    • Submit
    • Special Collections
  • EDITORIAL BOARD
    • Editorial Board
    • ECR Advisory Board
    • Journal Staff
  • ABOUT
    • Overview
    • Advertise
    • For the Media
    • Rights and Permissions
    • Privacy Policy
    • Feedback
    • Accessibility
  • SUBSCRIBE
PreviousNext
Articles, Cellular/Molecular

An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex

Ye Zhang, Kenian Chen, Steven A. Sloan, Mariko L. Bennett, Anja R. Scholze, Sean O'Keeffe, Hemali P. Phatnani, Paolo Guarnieri, Christine Caneda, Nadine Ruderisch, Shuyun Deng, Shane A. Liddelow, Chaolin Zhang, Richard Daneman, Tom Maniatis, Ben A. Barres and Jia Qian Wu
Journal of Neuroscience 3 September 2014, 34 (36) 11929-11947; https://doi.org/10.1523/JNEUROSCI.1860-14.2014
Ye Zhang
1Department of Neurobiology, Stanford University School of Medicine, Stanford, California 94305-5125,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kenian Chen
2The Vivian L. Smith Department of Neurosurgery, University of Texas Medical School at Houston, Houston, Texas 77057,
3Center for Stem Cell and Regenerative Medicine, University of Texas Brown Institute of Molecular Medicine, Houston, Texas 77057,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Steven A. Sloan
1Department of Neurobiology, Stanford University School of Medicine, Stanford, California 94305-5125,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Mariko L. Bennett
1Department of Neurobiology, Stanford University School of Medicine, Stanford, California 94305-5125,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Anja R. Scholze
1Department of Neurobiology, Stanford University School of Medicine, Stanford, California 94305-5125,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Sean O'Keeffe
4Department of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, New York 10032,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Hemali P. Phatnani
4Department of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, New York 10032,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Paolo Guarnieri
7Department of Systems Biology,
9Herbert Irving Comprehensive Cancer Center, Columbia University, New York, New York 10032
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Paolo Guarnieri
Christine Caneda
1Department of Neurobiology, Stanford University School of Medicine, Stanford, California 94305-5125,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Nadine Ruderisch
5Department of Anatomy, University of California, San Francisco, San Francisco, California 94143-0452,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Shuyun Deng
2The Vivian L. Smith Department of Neurosurgery, University of Texas Medical School at Houston, Houston, Texas 77057,
3Center for Stem Cell and Regenerative Medicine, University of Texas Brown Institute of Molecular Medicine, Houston, Texas 77057,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Shane A. Liddelow
1Department of Neurobiology, Stanford University School of Medicine, Stanford, California 94305-5125,
6Department of Pharmacology and Therapeutics, University of Melbourne, Parkville, Victoria, Australia 3010, and
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Chaolin Zhang
4Department of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, New York 10032,
7Department of Systems Biology,
8Center for Motor Neuron Biology and Disease, and
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Richard Daneman
5Department of Anatomy, University of California, San Francisco, San Francisco, California 94143-0452,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Tom Maniatis
4Department of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, New York 10032,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Ben A. Barres
1Department of Neurobiology, Stanford University School of Medicine, Stanford, California 94305-5125,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Ben A. Barres
Jia Qian Wu
2The Vivian L. Smith Department of Neurosurgery, University of Texas Medical School at Houston, Houston, Texas 77057,
3Center for Stem Cell and Regenerative Medicine, University of Texas Brown Institute of Molecular Medicine, Houston, Texas 77057,
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Jia Qian Wu
  • Article
  • Figures & Data
  • Info & Metrics
  • eLetters
  • PDF
Loading

Article Information

DOI 
https://doi.org/10.1523/JNEUROSCI.1860-14.2014
PubMed 
25186741
Published By 
Society for Neuroscience
History 
  • Received May 7, 2014
  • Revision received July 11, 2014
  • Accepted July 22, 2014
  • First published September 3, 2014.
  • Version of record published September 3, 2014.
Copyright & Usage 
Copyright © 2014 the authors 0270-6474/14/3411929-19$15.00/0

Author Information

  1. Ye Zhang1,*,
  2. Kenian Chen2,3,*,
  3. Steven A. Sloan1,*,
  4. Mariko L. Bennett1,
  5. Anja R. Scholze1,
  6. Sean O'Keeffe4,
  7. Hemali P. Phatnani4,
  8. Paolo Guarnieri7,9,
  9. Christine Caneda1,
  10. Nadine Ruderisch5,
  11. Shuyun Deng2,3,
  12. Shane A. Liddelow1,6,
  13. Chaolin Zhang4,7,8,
  14. Richard Daneman5,
  15. Tom Maniatis4,
  16. Ben A. Barres1,†, and
  17. Jia Qian Wu2,3,†
  1. 1Department of Neurobiology, Stanford University School of Medicine, Stanford, California 94305-5125,
  2. 2The Vivian L. Smith Department of Neurosurgery, University of Texas Medical School at Houston, Houston, Texas 77057,
  3. 3Center for Stem Cell and Regenerative Medicine, University of Texas Brown Institute of Molecular Medicine, Houston, Texas 77057,
  4. 4Department of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, New York 10032,
  5. 5Department of Anatomy, University of California, San Francisco, San Francisco, California 94143-0452,
  6. 6Department of Pharmacology and Therapeutics, University of Melbourne, Parkville, Victoria, Australia 3010, and
  7. 7Department of Systems Biology,
  8. 8Center for Motor Neuron Biology and Disease, and
  9. 9Herbert Irving Comprehensive Cancer Center, Columbia University, New York, New York 10032
View Full Text

Author contributions

  1. Author contributions: Y.Z., S.A.S., M.L.B., R.D., T.M., B.A.B., and J.Q.W. designed research; Y.Z., S.A.S., M.L.B., A.R.S., C.C., N.R., and S.D. performed research; S.A.L. and C.Z. contributed unpublished reagents/analytic tools; Y.Z., K.C., S.A.S., M.L.B., S.O., H.P.P., and P.G. analyzed data; Y.Z., S.A.S., and B.A.B. wrote the paper.

  2. ↵*Y.Z., K.C., and S.A.S. contributed equally to this work.

  3. ↵†B.A.B. and J.Q.W. contributed equally to this work.

View Abstract

Disclosures

    • Received May 7, 2014.
    • Revision received July 11, 2014.
    • Accepted July 22, 2014.
  • This work is supported by National Institutes of Health Grants R01 MH09955501 and R01 NS08170301 (B.A.B.), T32GM007365 with additional support from Stanford School of Medicine and its Medical Scientist Training Program (S.S.), and R00 GM95713 (C.Z.), a Berry Postdoctoral Fellowship (Y.Z.), and a National Health and Medical Research Council of Australia C. J. Martin Fellowship (S.L.). J.Q.W., K.C., and S.D. are supported by National Institutes of Health and the Staman Ogilvie Fund–Memorial Hermann Foundation. We thank Dr. Dritan Agalliu for Cldn5 expression plasmid and Vincent and Stella Coates for their generous support.

  • The authors declare no competing financial interests.

  • Correspondence should be addressed to either of the following: Ye Zhang, Stanford University School of Medicine, Department of Neurobiology, 299 Campus Drive, Fairchild Building, Stanford, California 94305-5125, zhangye{at}stanford.edu; or Jia Qian Wu, University of Texas Medical School, 1825 Pressler Street, SRB-630.01, Houston, TX 77030. jiaqian.wu{at}uth.tmc.edu

Online Impact

 

Article usage

Select a custom date range for the past year
E.g., 2025-12-10
to
E.g., 2025-12-10

Article usage: January 2018 to December 2025

AbstractFullPdf
Jan 2018465799346
Feb 2018509815329
Mar 2018549818338
Apr 2018509704312
May 2018494774315
Jun 2018411689300
Jul 2018392721303
Aug 2018390770310
Sep 2018342708282
Oct 2018420826296
Nov 2018350934307
Dec 20183541003239
Total 2018518595613677
Jan 20194071116303
Feb 2019344786277
Mar 2019339726287
Apr 2019333780274
May 20194371124341
Jun 20193101045316
Jul 2019337957347
Aug 2019328983346
Oct 20194181773318
Nov 2019346981276
Dec 2019303810275
Total 20193902110813360
Jan 20203131014259
Feb 2020316923366
Mar 20202421160394
May 20202551178520
Jun 20202151008355
Jul 2020179923333
Aug 2020153778290
Sep 2020229997357
Oct 20202321091395
Nov 2020208949331
Dec 2020206979351
Total 20202548110003951
Jan 20211961182350
Feb 20212471120356
Mar 20212361196445
Apr 20211871115367
May 20211731090347
Jun 20211811200317
Jul 20211541118291
Aug 20211501011287
Sep 20212131076359
Oct 20212191197446
Nov 20211931444460
Dec 20211441422373
Total 20212293141714398
Jan 20222031903417
Feb 20221832047367
Mar 20222251173418
Apr 20221941108453
May 20221961120492
Jun 20221871018371
Jul 2022182997315
Aug 2022188948293
Sep 20222181023287
Oct 20221911534310
Nov 20226531883
Dec 202266514269
Total 20222098137034075
Jan 20231981092302
Feb 2023164831273
Mar 20231931124335
Apr 2023174806325
May 2023161755293
Jun 2023142786246
Jul 2023185888253
Aug 2023137845249
Sep 20231441037272
Oct 20231791535275
Nov 20232271774255
Dec 20233081132255
Total 20232212126053333
Jan 20242981240353
Feb 20242371104278
Mar 20242101239390
Apr 20242521774337
May 20242062617301
Jun 2024176964267
Jul 20241711146270
Aug 20241371584234
Sep 20241581060296
Oct 2024202996320
Nov 2024149851305
Dec 20241171302253
Total 20242313158773604
Jan 20251691012275
Feb 20251401649355
Mar 20251201228294
Apr 2025136894274
May 2025137844291
Jun 2025103819261
Jul 2025116840240
Aug 20251261005325
Sep 20251101227254
Oct 2025139933255
Nov 20251421211308
Dec 20252920160
Total 20251467118633192
Total220189986129590
Back to top

In this issue

The Journal of Neuroscience: 34 (36)
Journal of Neuroscience
Vol. 34, Issue 36
3 Sep 2014
  • Table of Contents
  • Table of Contents (PDF)
  • About the Cover
  • Index by author
  • Advertising (PDF)
  • Ed Board (PDF)
Email

Thank you for sharing this Journal of Neuroscience article.

NOTE: We request your email address only to inform the recipient that it was you who recommended this article, and that it is not junk mail. We do not retain these email addresses.

Enter multiple addresses on separate lines or separate them with commas.
An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex
(Your Name) has forwarded a page to you from Journal of Neuroscience
(Your Name) thought you would be interested in this article in Journal of Neuroscience.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Print
View Full Page PDF
Citation Tools
An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex
Ye Zhang, Kenian Chen, Steven A. Sloan, Mariko L. Bennett, Anja R. Scholze, Sean O'Keeffe, Hemali P. Phatnani, Paolo Guarnieri, Christine Caneda, Nadine Ruderisch, Shuyun Deng, Shane A. Liddelow, Chaolin Zhang, Richard Daneman, Tom Maniatis, Ben A. Barres, Jia Qian Wu
Journal of Neuroscience 3 September 2014, 34 (36) 11929-11947; DOI: 10.1523/JNEUROSCI.1860-14.2014

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
Respond to this article
Request Permissions
Share
An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex
Ye Zhang, Kenian Chen, Steven A. Sloan, Mariko L. Bennett, Anja R. Scholze, Sean O'Keeffe, Hemali P. Phatnani, Paolo Guarnieri, Christine Caneda, Nadine Ruderisch, Shuyun Deng, Shane A. Liddelow, Chaolin Zhang, Richard Daneman, Tom Maniatis, Ben A. Barres, Jia Qian Wu
Journal of Neuroscience 3 September 2014, 34 (36) 11929-11947; DOI: 10.1523/JNEUROSCI.1860-14.2014
Twitter logo Facebook logo Mendeley logo
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Jump to section

  • Article
    • Abstract
    • Introduction
    • Materials and Methods
    • Results
    • Discussion
    • Notes
    • Footnotes
    • References
  • Figures & Data
  • Info & Metrics
  • eLetters
  • PDF

Keywords

  • alternative splicing
  • astrocytes
  • microglia
  • oligodendrocytes
  • transcriptome
  • vascular cells

Responses to this article

Respond to this article

Jump to comment:

No eLetters have been published for this article.

Related Articles

Cited By...

More in this TOC Section

Articles

  • Memory Retrieval Has a Dynamic Influence on the Maintenance Mechanisms That Are Sensitive to ζ-Inhibitory Peptide (ZIP)
  • Neurophysiological Evidence for a Cortical Contribution to the Wakefulness-Related Drive to Breathe Explaining Hypocapnia-Resistant Ventilation in Humans
  • Monomeric Alpha-Synuclein Exerts a Physiological Role on Brain ATP Synthase
Show more Articles

Cellular/Molecular

  • Widely Used CaMKII Regulatory Segment Mutations Cause Tight Actinin Binding and Dendritic Spine Enlargement in Unstimulated Neurons
  • High-Pressure Freezing EM Tomography of Entire Ribbon Synapses in the Retina
  • Identifying Key Regulators in Odorant Receptor Trafficking
Show more Cellular/Molecular
  • Home
  • Alerts
  • Follow SFN on BlueSky
  • Visit Society for Neuroscience on Facebook
  • Follow Society for Neuroscience on Twitter
  • Follow Society for Neuroscience on LinkedIn
  • Visit Society for Neuroscience on Youtube
  • Follow our RSS feeds

Content

  • Early Release
  • Current Issue
  • Issue Archive
  • Collections

Information

  • For Authors
  • For Advertisers
  • For the Media
  • For Subscribers

About

  • About the Journal
  • Editorial Board
  • Privacy Notice
  • Contact
  • Accessibility
(JNeurosci logo)
(SfN logo)

Copyright © 2025 by the Society for Neuroscience.
JNeurosci Online ISSN: 1529-2401

The ideas and opinions expressed in JNeurosci do not necessarily reflect those of SfN or the JNeurosci Editorial Board. Publication of an advertisement or other product mention in JNeurosci should not be construed as an endorsement of the manufacturer’s claims. SfN does not assume any responsibility for any injury and/or damage to persons or property arising from or related to any use of any material contained in JNeurosci.