Abstract
Dentate gyrus (DG) is widely thought to provide a teaching signal that enables hippocampal encoding of memories, but its role during retrieval is poorly understood. Some data and models suggest that DG plays no role in retrieval; others encourage the opposite conclusion. To resolve this controversy, we evaluated the effects of optogenetic inhibition of dorsal DG during context fear conditioning, recall, generalization, and extinction in male mice. We found that (1) inhibition during training impaired context fear acquisition; (2) inhibition during recall did not impair fear expression in the training context, unless mice had to distinguish between similar feared and neutral contexts; (3) inhibition increased generalization of fear to an unfamiliar context that was similar to a feared one and impaired fear expression in the conditioned context when it was similar to a neutral one; and (4) inhibition impaired fear extinction. These effects, as well as several seemingly contradictory published findings, could be reproduced by BACON (Bayesian Context Fear Algorithm), a physiologically realistic hippocampal model positing that acquisition and retrieval both involve coordinated activity in DG and CA3. Our findings thus suggest that DG contributes to retrieval and extinction, as well as to the initial establishment of context fear.
SIGNIFICANCE STATEMENT Despite abundant evidence that the hippocampal dentate gyrus (DG) plays a critical role in memory, it remains unclear whether the role of DG relates to memory acquisition or retrieval. Using contextual fear conditioning and optogenetic inhibition, we show that DG contributes to both of these processes. Using computational simulations, we identify specific mechanisms through which the suppression of DG affects memory performance. Finally, we show that DG contributes to fear extinction learning, a process in which learned fear is attenuated through exposures to a fearful context in the absence of threat. Our data resolve a long-standing question about the role of DG in memory and provide insight into how disorders affecting DG, including aging, stress, and depression, influence cognitive processes.
Introduction
The hippocampal dentate gyrus (DG) has emerged as a critical locus of plasticity with relevance to memory, anxiety disorders, and depression. Manipulations targeted specifically to DG impair memory acquisition (Kheirbek et al., 2013; Madroñal et al., 2016), modulate anxiety levels (Snyder et al., 2011; Samuels et al., 2015; Seo et al., 2015), and block some effects of antidepressant drugs in clinically relevant models (Santarelli et al., 2003; David et al., 2009), leading to speculation that DG is a promising target for therapeutic manipulations (Drew and Hen, 2007; Kheirbek et al., 2012).
The DG is thought to perform pattern separation, the decorrelation of neural inputs to the hippocampus (O'Reilly and McClelland, 1994; Treves and Rolls, 1994; Rolls, 1996). Manipulations that impair DG pattern separation during encoding are hypothesized to lead to increased interference in CA3 during retrieval, thereby impairing memory precision and discrimination learning (McHugh et al., 2007; Sahay et al., 2011; Nakashiba et al., 2012; Swan et al., 2014). When memory is of an aversive nature, impaired pattern separation may lead to generalized fear and anxiety and form the seed of anxiety disorders (Kheirbek et al., 2012; Phan et al., 2013; Drew and Huckleberry, 2017).
DG pattern separation is widely believed to be critical during hippocampal memory acquisition, but its contribution to memory retrieval is debated. Some theoretical accounts (Rolls, 1996; Rolls and Kesner, 2006) propose that sparse patterns of activation in DG enable memory encoding in CA3, whereas memory retrieval is mediated through direct cortical inputs to CA3. This account is supported by a number of studies showing that suppressing or lesioning the DG interferes with memory acquisition but not with the expression of already learned memories (Lassalle et al., 2000; Kheirbek et al., 2013; Madroñal et al., 2016). However, other theoretical accounts conclude that DG contributes to both memory acquisition and retrieval (O'Reilly and McClelland, 1994; Krasne et al., 2015), a prediction supported by recording studies (Leutgeb et al., 2007) and studies using activity-dependent neural tagging (Deng et al., 2013; Denny et al., 2014) that have shown that memory acquisition and expression activate similar populations of DG neurons. In addition, optogenetic stimulation of DG neurons that had been activated during fear memory acquisition drives fear expression (Liu et al., 2012; Ramirez et al., 2013; Redondo et al., 2014; Ryan et al., 2015), whereas suppressing these cells attenuates fear expression (Denny et al., 2014). The literature thus contains a paradox: on the one hand, activating granule cell ensembles genetically tagged during acquisition is sufficient to drive memory recall, and silencing these ensembles can prevent it; on the other hand, more comprehensive silencing of DG does not reliably prevent memory expression.
We used transient optogenetic suppression of dorsal DG to investigate its role in individual memory stages during contextual fear conditioning (CFC). Context fear conditioning provides a useful window into hippocampal function because the hippocampus plays a critical role in forming and retrieving neural representations of the context to which fear becomes conditioned (Rudy et al., 2004; Fanselow, 2010). In addition to examining the acquisition and expression of context fear, we studied the role of DG in fear extinction, a process that requires both the retrieval of hippocampally stored information and the acquisition of new learning that may be hippocampal, at least in part (see Discussion). Our data suggest that DG plays a role in both fear acquisition and extinction. Expression of fear or extinction memories did not require DG. However, the suppression of DG neural activity during fear expression impaired the ability to distinguish between similar contexts, leading to apparent overgeneralization of both fear and neutral memories. Simulations using a biologically realistic computational model of the hippocampus that formalizes common views of the role of hippocampus in context fear learning suggest that our findings, as well as apparently conflicting published findings, are all consistent with the hypothesis that both acquisition and retrieval involve coordinated activity in DG and CA3.
Materials and Methods
Subjects.
Male C57BL/6J mice obtained from The Jackson Laboratory (RRID:IMSR_JAX:000664) were housed in groups of four in plastic cages with wood chip bedding and were maintained on a 12 h light/dark cycle (7:00 A.M. to 7:00 P.M.) in a temperature- and humidity-controlled vivarium. Food and water were provided ad libitum. Experiments were conducted during the light phase. All procedures were approved by the University of Texas at Austin Institutional Animal Care and Use Committee.
Stereotaxic surgery.
Mice underwent stereotaxic surgery for virus injection at 8–10 weeks of age. Viruses (rAAV 2/7, rep/cap) expressing eNpHR3.0–sfGFP fusion protein (Royer et al., 2012) or eGFP under the human synapsin promoter were assembled using a helper-free system (Stratagene) and were purified on sequential cesium gradients according to published methods (Grieger et al., 2006). Titers were measured using a payload-independent quantitative PCR technique (Aurnhammer et al., 2012). Typical titers were >1010 genomes/μl. Viruses were injected bilaterally using a NanoJect II microinjector (Drummond) targeted to two locations within the dorsal DG (from bregma: AP = −2.0 mm; ML = ±1.3 mm; DV = −2.1 and 1.85 mm). At each location, there were two infusions of 23 nl each. The infusions were 1 s in duration and spaced 1 min apart. Mice were bilaterally implanted with optic fibers during the same surgery at a 20° angle targeted above the dorsal DG (from bregma: AP = −2.0 mm; ML = ±1.3 mm; DV = −1.5 mm). Optic fiber implants were constructed based on published protocols (Sparta et al., 2011), using 1.25 mm ceramic ferrules (Kientec Systems) and 200 μm core, 0.39 numerical aperture multimode fiber (ThorLabs).
Electrophysiology.
Mice were anesthetized with isoflurane and placed in a stereotaxic frame. A single-wire tungsten microelectrode (127 μm diameter, 0.5 MΩ; A-M Systems) was lowered into the dentate gyrus (from bregma: AP, −2.0 mm; ML, ±1.3 mm; DV, −1.85 mm). An identical microelectrode was placed in the ipsilateral angular bundle for perforant path stimulation (from bregma: AP = lambda; ML = 2.6 to 3.0 mm; DV = −2.0 to −2.25 mm). Stimulation was applied using a constant current stimulus isolator (NL800, Digitimer), and the final position of both electrodes was adjusted to maximize positive response. Input–output relations were constructed by delivering a series of 10 0.1-ms duration waveforms with a 500 ms interstimulus interval beginning at an intensity of 200 μA and increasing at 200 μA intervals. Each input–output current series was repeated three times at each time point and averaged for analysis. At the end of the recording, an electrolytic lesion was made through the recording electrode to allow for verification of the recording site. A model 17fc00 Differential AC Amplifier (A-M Systems) and AxoGraphX software (Axograph Scientific; RRID:SCR_014284) were used to record and collect data. Responses were analyzed using AxoGraphX software.
Optogenetic inhibition.
Experiments occurred 2–3 weeks following virus injection/fiber implantation. Before the start of experiments, mice were handled for 3–4 d; during this time they were habituated to the fiber-optic cables by allowing them to explore a novel cage while tethered to the cables.
For light stimulation, cranial implants were connected to a 140 mW, 532 nm laser (Shanghai Dream Lasers Technology) via patch cables connected to an FC/PC rotary joint (Doric Lenses). Following cable connection, mice were immediately placed in the behavioral apparatus. Laser intensity was set to output 7–9 mW at the end of the optic fiber implant.
Novel environment exploration.
Novel environment exposure was performed in four gray open field arenas (40 × 40 cm) with opaque walls. The arenas were lighted with white incandescent bulbs (65 lux at the center of the arena). Mice were brought to an isolated holding area the day before the start of the experiment to reduce induction of immediate-early genes (IEGs) related to transport and activity in the vivarium. Mice were transported directly from the holding area to the testing room, where they were connected to fiber-optic patch cables and were immediately placed into a novel open field apparatus for 15 min, after which they were returned to their home cage. Ninety minutes later, mice were transcardially perfused and the brains were dissected and prepared for sectioning.
Fear conditioning.
Mice were transported to a holding area adjacent to the testing room at least 1 h before start of experiments. Mice were transported into the testing room in opaque plastic containers. Conditioning always took place in a 30.5 × 24 × 21 cm chamber (Med Associates) with three aluminum walls, a clear Plexiglas door, and ceiling and stainless steel grid flooring (Med-Associates VFC-005A; Context A). Conditioning chambers were contained within larger sound-attenuating chambers that were equipped with an overhead white light that was kept on throughout sessions. The apparatus was cleaned before and after each animal with 70% ethanol and scented with 1% acetic acid solution in the waste tray below the floor. The similar context (Context C) consisted of the same chamber with a staggered grid flooring (Med-Associates VFC-005A-S) cleaned with Lysol cleaning wipes. A one-shock conditioning protocol was used based on evidence that it is more sensitive to hippocampal manipulations than are multiple-shock protocols (Wiltgen et al., 2006; Drew et al., 2010). Mice were connected to fiber-optic patch cables and immediately placed into the apparatus where they received a single 2 s 0.75 mA scrambled footshock delivered through the grid flooring. The shock was delivered 180 s after the mouse was placed in the chamber; the mouse was removed 30 s after the shock. For extinction training/context tests mice were returned to the chamber for 5 min with no shock once per day, a protocol that has previously been demonstrated to produce effective extinction (Bernier et al., 2014). For acquisition and recall experiments, context tests were limited to 3 min to minimize extinction. For the experiment involving pre-exposure to the similar context, the pre-exposure consisted of a 5 min session in the similar context with no shock. Conditioning took place in Context A, as described above, 24 h after the pre-exposure session. Sessions were recorded with a near-infrared camera mounted to the door of the sound-attenuating chamber. Freezing was manually scored from the videos by an investigator who was blind to experimental conditions.
Immunohistochemistry.
Mice were anesthetized with ketamine/xylazine (150/15 mg/kg) and perfused transcardially with 20–25 ml of cold 0.1 m PBS followed by 15–20 ml of cold 4% paraformaldehyde (PFA). Brains were then postfixed in 4% PFA for 24 h and transferred to a solution of 30% sucrose in PBS at 4°C for cryopreservation. Coronal sections (35 μm) were cut on a cryostat and stored in 0.1% sodium azide in PBS.
For immunostaining, sections were washed in PBS and blocked for 1 h at room temperature (RT) in 10% normal donkey serum with 0.1% Triton X-100 in PBS. Sections were incubated with primary antibody (1:2000; rabbit anti-Arc, Synaptic Systems; RRID:AB_887694) in blocking solution at RT overnight. The following day, sections were washed in PBS and incubated with a secondary antibody (1:500; Cy-3-conjugated donkey anti-rabbit, Jackson ImmunoResearch; RRID:AB_2307443) and 4′,6′-diamidino-2-phenylindole dihydrochloride (DAPI; 1:1000; Invitrogen; RRID:AB_2307445) in blocking solution for 1 h at RT.
Arc quantification.
Using DAPI to identify the granule cell layer, Arc+ cells in both the upper and lower blades of the DG were counted exhaustively under fluorescent illumination. Cells were counted in every sixth section (total of 12 sections/animal) across the dorsoventral axis of the hippocampus. Area measurements for calculating density were obtained by tracing the granule cell layer using ImageJ software [National Institutes of Health (https://imagej.nih.gov/ij/; RRID:SCR_003070)].
Simulations.
Simulations were performed using BACON (Bayesian Context Fear Algorithm; Krasne et al., 2015). BACON mimics current conceptions of entorhinal cortex (EC), DG, and CA3 circuit operation during context fear conditioning and recall, but it adds nonhippocampal (presumptively prefrontal) circuitry that configures the hippocampus specifically for encoding of a new hippocampal representation or retrieval of an existing one, as appropriate, with the decision on whether to retrieve or encode being based on a comparison between an EC coding of the currently observed attributes of a context and an EC coding of recalled attributes associated with the currently active representation. If these do not match, the hippocampus is configured to create (encode) a new representation of the current context. When in encoding mode, a K-winners-take-all (KWTA) mechanism in DG allows only a small number (KDG) of DG cells most heavily innervated by the currently active cortical representation of the context to fire. Each DG cell that fires then develops effective innervation of a permanent CA3 partner, which becomes one cell of the now-permanent hippocampal representation of the context. In addition, all active direct and indirect path synapses on the active DG and CA3 cells become potentiated, as do all the presynaptically and postsynaptically coactive CA3 recurrent network synapses. In the future, when placed in the encoded context, with BACON working in retrieval mode, CA3 cells combine input from the direct and indirect paths (excitation reaching CA3 via each path is proportional to the amount of input from cortex that arrives via potentiated synapses), and the KCA3 most excited CA3 cells fire. If the system has stored multiple somewhat similar contexts, the CA3 cells firing will be a mix of representation cells of the current and other similar contexts (Leutgeb et al., 2007; consistent with data of Deng et al., 2013), although those representing the current context will be the most numerous. The recurrent collateral system then operates on this input and completes whichever representation had the most cells active before the recurrent input, suppressing all others.
The EC–hippocampal circuit is an approximately one-one hundredth abstraction of rat cortex–hippocampus circuitry as depicted by Treves and Rolls (1994) and O'Reilly and McClelland (1994). There were 10,000 DG cells; 3000 CA3 cells; KDG and KCA3 = 60; and 1000 EC cells providing input to hippocampus and a corresponding 1000 receiving output from it. Each DG and CA3 cell was innervated by a random 60 EC cells. The model was configured so that fear was learned entirely by potentiating synapses between a hippocampal representation of the context and amygdala fear-causing cells; direct cortical input to the amygdala was not involved in context fear for reasons given in the study by Krasne et al. (2011). During recall, the direct path input from EC to CA3 was one-third the strength of the indirect path input via DG; this value was chosen because it gave maximal ability to distinguish similar contexts correctly (Krasne et al., 2015).
In our simulations, contexts were composed of 100 EC-coded attributes from a set of 1000 possible attributes. All contexts had 50 general attributes in common (thought of as characteristics of the general laboratory environment) and 50 attributes specific to a particular context. To emulate the fact that animals in an experiment would already be familiar with various laboratory contexts (e.g., due to handling, exposure to the laboratory), all experiments were preceded by pre-exposure to several contexts composed of all 50 of the general laboratory attributes plus 50 attributes drawn at random from the 950 possible context-specific attributes. These pre-exposures were long enough for sampling of 90 of 100 attributes in a context. Pre-exposure is represented as context B exposure in Figure 6.
Simulations of the behavioral experiments proper consisted of two or three 10-min-long sessions. In all simulations, conditioning occurred in an unfamiliar context, context A, where a shock was given just before the end of the session, and this was followed by a recall session in either context A or a similar context (context C) having 95% of its attributes in common with context A. In most simulations context C was unfamiliar; however, in the final experiment of the paper, the conditioning session in context A was preceded by a 10-min-long pre-exposure session in context C. The scoring of freezing during recall sessions was always for the first four nominal minutes of the session. The rate of (random) sampling of contextual attributes by BACON decayed as a double exponential (sum of a fast and a slow decay) such that 95% of the attributes of the context were sampled by the end of the nominally 10 min session, and 87% during the first 4 min.
The computational cycle of the program repeated every one-fifth nominal seconds. For the purposes of the simulations it was assumed that in our experiments optogenetic suppression of DG silenced 50% of BACON′s 10,000 DG cells and that the number of cells firing in DG during encoding, when a KWTA rule controlled firing, was reduced from 60 to 23 (i.e., ∼40% of normal).
The use of the direct and indirect paths together for recall provides more information about the environment than would either pathway alone and therefore minimizes retrieval errors; moreover, optimal performance is achieved when the indirect pathway is approximately three times more effective than the direct one. However, either pathway alone works well so long as very similar contexts do not have to be discriminated. The use of the DG, with its especially high number of cells and KWTA behavior, to determine which cells will become part of a representation during encoding minimizes the overlap between one representation and another and thereby prevents confusions between representations during recall. However, in the absence of input from DG during encoding, KWTA properties of CA3, working on excitation produced by the direct pathway, cause satisfactory encoding, although very similar contexts encoded in this way are more subject to confusion than if DG had operated normally.
Data analysis.
Data were analyzed using ANOVA and repeated-measures (RM) ANOVA where appropriate. Significant interaction effects were probed using Holm–Sidak or Bonferroni pairwise comparisons. Analyses were performed in JMP (SAS Institute; RRID:SCR_014242) or Prism (GraphPad Software; RRID:SCR_002798). The α value was set at 0.05 for all analyses.
Results
Optogenetic inhibition of DG neural activity
DG neural activity was inhibited in vivo using the light-activated chloride pump halorhodopsin (eNpHR3.0–sfGFP; Royer et al., 2012), which was expressed from a human synapsin promoter (Schoch et al., 1996) using a recombinant adeno-associated virus (AAV). There was robust expression of eNpHR3.0–sfGFP in DG, as judged by fluorophore abundance, 2–3 weeks after the viral injection. Expression was confined to the dorsal DG, including the hilus, with minimal expression in CA3 and other hippocampal subregions (Fig. 1A). Suppression of DG neural activity was confirmed using electrophysiological recordings of perforant path-evoked population responses from the DG of anesthetized mice (Fig. 1B). Input–output relationships, EPSP slope, and population spike amplitude were measured with and without light-mediated inhibition (532 nm, 7–9 mW). Although eNpHR activation had no effect on EPSP slope, it significantly reduced the amplitude of population spikes (Fig. 1C–E). Two-way RM-ANOVA on the population spike amplitude yielded a significant main effect of laser illumination (F(1,4) = 20.94, p = 0.0102) and stimulation intensity (F(9,36) = 64.84, p < 0.0001), as well as a significant interaction (F(9,36) = 13.14, p < 0.0001). Post hoc pairwise comparisons (Holm–Sidak) confirmed significant differences between laser on and off conditions at stimulation intensities of ≥1200 μA. Together, these data demonstrate effective inhibition of dorsal DG activity in vivo by eNpHR.
To evaluate the spatial extent of DG inhibition, we assessed the ability of eNpHR to block novelty-induced IEG expression. Mice expressing eNpHR3.0–sfGFP in DG (DG-Halo mice) were allowed to explore a novel environment for 15 min while the DG was inhibited with green light (532 nm, 7–9 mW) via optical fibers implanted over DG. Control DG-Halo mice were not given laser illumination during novel environment exposure. In addition, a home-cage control group of DG-Halo mice was killed without exposure to the novel environment. Novel environment-exposed mice were killed 90 min following the exposure. Novel environment exposure caused a reliable increase in expression of the IEG Arc in the DG granule cell layer in control mice compared with home-cage controls (Fig. 2B,C). Inhibition of DG blocked the novelty-induced increase in Arc expression, leaving Arc expression at the level of home-cage control mice (Fig. 2B–F). One-way ANOVA on the number of Arc+ cells/mm2/section in dorsal DG (Fig. 2F) yielded a significant effect of experimental condition (F(2,26) = 8.511, p < 0.005). Post hoc pairwise comparisons (Holm–Sidak) confirmed that novel environment exposure elevated the density of Arc+ cells in the absence of DG inhibition (home-cage vs no optogenetic inhibition, p < 0.01), and this effect was blocked by optogenetic inhibition (inhibition vs no inhibition, p < 0.01). As expected, Arc expression in the posterior/ventral DG (outside the area of viral infection) was not affected by laser illumination (Fig. 2E,F). One-way ANOVA of Arc+ cell density in posterior DG confirmed a lack of effect by novel environment exposure and optogenetic inhibition (Fig. 2E; F(2,26) = 0.9616, p = 0.3955). The data confirm that optogenetic inhibition blocked novelty-induced DG activation throughout the dorsal DG.
DG neural activity is required for acquisition of CFC but not retrieval
Based on previous reports (Lee and Kesner, 2004; Drew et al., 2010; Kheirbek et al., 2013), we expected that inhibiting DG during CFC training would impair fear memory acquisition. DG-Halo mice or control mice expressing eGFP (DG-GFP) were administered CFC with laser illumination of the DG during the conditioning session (Fig. 3A). Mice were returned to the conditioning chamber the following day with opaque dummy ferrules placed between the laser patch cable and the fiber implant. This configuration completely blocked light entry into the brain, while maintaining any ambient green light escaping from the patch cable that could serve as a contextual cue. DG-Halo mice displayed reduced freezing behavior during the context test compared with controls (Fig. 3B). The effect of suppressing DG during CFC training may mean that DG neural activity is required for CFC acquisition. Alternatively, it could reflect state-dependent learning in which the experimental manipulation (DG suppression) itself becomes part of the fear context. To rule out state-dependent effects, we conducted a second context test with continuous laser illumination of the DG, thus recreating the conditions prevailing during acquisition (Fig. 3A). DG-Halo mice again displayed reduced freezing compared with controls (Fig. 3B). RM-ANOVA on the freezing data from the two context tests confirmed a significant main effect of virus (DG-Halo vs DG-GFP; F(1,13) = 7.55, p = 0.0378). There was no effect of context test (with laser illumination vs without; F(1,13) < 1) nor did the context test interact with virus (F(1,13) < 1). The data indicate that suppressing DG during CFC training impairs the acquisition of context fear memory.
Next, we assessed the role of DG in fear memory retrieval. A new cohort of DG-Halo and DG-GFP mice was conditioned with no laser illumination. On the following day, mice received a 5 min exposure to the training context without shock during which the DG was continuously illuminated. There was no difference in freezing between groups (Fig. 4B; t(25) = 0.1875, p = 0.8528), which is consistent with a previous report suggesting that DG may not be required for the retrieval of context fear memories or expression of freezing behavior (Kheirbek et al., 2013).
Inhibition of dorsal DG impairs acquisition but not retrieval of context fear extinction learning
The fear retrieval test is also an extinction training session. Extinction is thought to entail learning not to respond, rather than erasure of the original learning (Pavlov, 1927; Bouton, 2002; Myers and Davis, 2002). Extinction of context fear requires that the fear itself be evoked and thus depends on hippocampal recall processes. Although the extinction of fear is often thought to depend on changes within the amygdala and prefrontal cortex (Milad and Quirk, 2012; Trouche et al., 2016), there is evidence that it may also involve learning within the hippocampus itself (Corcoran et al., 2005; Tronson et al., 2012). Insofar as hippocampal learning and recall depend upon DG, it is possible that DG suppression would affect context fear extinction learning and its retrieval. We therefore investigated the role of DG in extinction.
The mice used in the retrieval experiment were administered an additional four daily 5 min shock-free context exposures with continuous DG illumination. In these context exposures (exposures 2–5), freezing of DG-Halo mice exceeded that of control mice, suggesting that inhibiting DG attenuated extinction of context fear (Fig. 4B). RM-ANOVA on sessions 2–5 confirmed a significant effect of virus (F(1,25) = 8.20, p = 0.0084). Extinction ratios (freezing in sessions 4 and 5 divided by freezing in session 1; Fig. 4C) were significantly lower in DG-GFP mice than in DG-Halo mice (t(21) = 2.2, p = 0.038). To confirm that freezing behavior during the repeated context exposures reflected fear and not simply immobility, we included groups of DG-Halo and DG-GFP mice that received five daily context exposures but were not shocked. Both groups of unshocked mice displayed low levels of freezing throughout the exposures (Fig. 4B). RM-ANOVA on days 2–5 yielded a significant shock × virus interaction (F(1,37) = 4.22, p = 0.0470). Follow-up pairwise tests confirmed that there was a significant effect of DG suppression in shocked mice (as reported above) but not in mice that had not been shocked (F(1,12) < 1; Fig. 4B).
To confirm that DG-Halo mice were capable of extinction learning after five sessions of illumination, all shocked mice were given an additional two sessions of extinction training without DG illumination (Fig. 4A,B; context tests 6–7). RM-ANOVA on sessions 6–7 yielded a significant effect of virus (F(1,25) = 6.6, p = 0.0165). Although the virus × session interaction was not significant (p = 0.330), we tested the a priori prediction that the DG-GFP and DG-Halo groups would differ in session 6 but not in session 7. During session 6, the freezing of DG-Halo mice continued to exceed that of DG-GFP controls (t(50) = 2.63, p = 0.0112), but during session 7 the two groups did not differ (t(50) = 1.41, p = 0.1655). Thus, mice that received extinction training with DG silenced were able to extinguish after DG suppression was terminated. This result indicates that DG suppression did not cause permanent dysfunction.
Fear extinction involves anatomically and behaviorally dissociable acquisition and expression processes (Drew et al., 2004; Quirk and Mueller, 2008; Plendl and Wotjak, 2010). The attenuation of extinction caused by DG suppression could reflect impaired extinction learning (acquisition of extinction) or an inability to suppress fear after extinction is learned (expression of extinction). To differentiate between these accounts, new groups of DG-Halo and DG-GFP mice were conditioned and then given 5 d of extinction training without DG illumination (Fig. 4D). With DG function intact, context fear declined over the 5 d of extinction training (Fig. 4E), and freezing did not differ between the DG-Halo and DG-GFP groups. The data were analyzed as in the previous experiment. There was no effect of virus on freezing during the retrieval test, session 1 (t(16) = 0.05, p = 0.9638). During sessions 2–5, there was a significant effect of session (F(3,48) = 15.26, p < 0.0001) but no effect of virus (F(1,16) = 1.64, p = 0.2189) or the interaction (F < 1). After context fear reached an asymptotically low level, both groups of mice were given a final context test under continuous laser illumination of DG. Both groups exhibited a small increase in freezing between session 5 and session 6, perhaps because the introduction of light as a cue caused the renewal of fear. However, the increase in freezing was no larger in DG-Halo mice than in DG-GFP controls. In both groups, freezing in session 6 was significantly lower than the session 1 (pre-extinction) level. The data from sessions 5 and 6 were subjected to RM-ANOVA, which confirmed a significant effect of session (F(1,16) = 9.58, p = 0.0070) but no effect of virus (F < 1) or the interaction (F < 1). We also computed an extinction ratio comparing freezing in session 6 to that in session 1 [6/(6 + 1); Fig. 4F]. The extinction ratio did not differ between DG-Halo mice and DG-GFP controls (t(16) = 0.29, p = 0.7791), indicating that extinction produced a comparable suppression of freezing in the two groups.
Simulations support a role of DG in retrieval
The apparent lack of an effect of DG suppression on CFC expression is puzzling because it conflicts with recent reports supporting a role for DG in CFC retrieval. In particular, Denny et al. (2014) expressed the optogenetic inhibitor archaerhodopsin (Arch) in the subset of mouse DG cells active during CFC acquisition (“engram cells”). Suppressing this cell population during subsequent recall tests attenuated fear expression. Why would suppressing a small population of engram cells impair CFC retrieval, whereas suppressing a larger population of granule cells nonspecifically fails to impair CFC retrieval? To generate hypotheses as to how hippocampal circuit mechanisms might give rise to these seemingly incompatible results, we performed simulations using BACON (Krasne et al., 2015). BACON is a biologically plausible computational model of hippocampal processing in CFC that can reproduce a number of CFC phenomena, including the immediate-shock deficit, pre-exposure effects, and fear generalization (Krasne et al., 2015). BACON mimics current conceptions of EC, DG, and CA3 circuit operation during context fear conditioning and recall, while adding nonhippocampal (presumptively prefrontal) circuitry that configures the hippocampus specifically for encoding of a new representation or retrieval of an existing one, as appropriate. Encoding involves plasticity in both DG and CA3, and retrieval is mediated by activity at both EC–CA3 (direct path) and EC–DG–CA3 (indirect path) synapses (Fig. 5A; Materials and Methods).
As seen in rows 1 and 2 of Figure 5B, BACON simulates the finding that partial, nonspecific suppression of DG during CFC training causes a clear diminution of fear (Fig. 5B, row 2). In the simulations, this effect occurs because the number of DG cells that fire—and whose synapses therefore undergo potentiation—during training is substantially below normal; therefore, at testing, the CA3 cells associated with context A are in a minority before recurrent input, which often results in the recurrent collateral system completing the wrong representation. Because only context A had been paired with shock, the activation of a non-A context representation fails to activate fear. The simulations also simulate the finding that partial, nonspecific suppression of DG during postconditioning testing has little effect (Fig. 5B, row 3). The model behaves in this way because the silenced input to CA3 from DG is not specific to any one context, and the input that remains is balanced with respect to the various contexts that have been encoded. In addition, input via the direct path remains normal.
We then simulated the manipulation of Denny et al. (2014), in which optogenetic inhibitor Arch is conditionally expressed in the subset of mouse DG cells active during CFC acquisition (engram cells). Consistent with the results of the study by Denny et al. (2014), during recall in BACON suppressing the subset of DG cells that were active during encoding caused pronounced fear attenuation (Fig. 5B, row 4). BACON generates this result because when only the DG cells corresponding to the conditioning context are silenced, the cells that fire during recall are likely to be ones that encode features of a different (nonfearful) context. Consequently, the activity of these remaining DG neurons biases CA3 toward retrieving a representation of a context other than the conditioning context, leading to a reduction in fear expression.
Finally, we simulated an experiment of Nakashiba et al. (2012), who found that complete suppression of DG output during both encoding and retrieval had virtually no effect on context fear conditioning. BACON emulates this result as well (Fig. 5B, row 5). It does so because the direct path (from EC to CA3) to CA3 can alone mediate satisfactory encoding and retrieval, so long as very similar contexts do not have to be distinguished. The results of this simulation and the others described above are schematized in Figure 6.
It should be emphasized that although our own behavioral experiments reported above do not provide direct evidence of the participation of DG in recall, the ability of BACON to emulate the results of all these experiments, as well as the aforementioned published experiments, is contingent on the participation of DG in recall. To make this clear, we repeated the simulations just described, with DG entirely suppressed during recall (Fig. 5B). Under this condition, BACON fails to reproduce the experimental results that it emulates so well when DG does participate in recall.
DG suppression reduces memory precision during recall
The BACON simulations suggest that DG contributes to CFC recall even though our behavioral experiments failed to detect an effect of DG suppression on the expression of CFC. We sought to identify task conditions under which the DG contribution to fear expression could be confirmed behaviorally. During recall, CA3 in BACON receives input both directly from EC (the direct path) and via DG (the indirect path). If distinctions between similar contexts do not need to be made, then the direct path alone is sufficient for BACON to produce normal recall of conditioning. However, if BACON must distinguish between similar feared and neutral (unfeared) contexts, the loss of DG input affects recall. For instance, if BACON is tested in a neutral context that is similar to a feared context, DG suppression increases fear, because shared features of the similar contexts cause BACON to sometimes activate the representation of the feared context rather than the neutral one. Conversely, if BACON is tested in a feared context that is similar to a neutral context, DG suppression reduces fear, because the similar neutral context representation is sometimes activated incorrectly. We undertook behavioral experiments to test these predictions with the goal of providing direct evidence for the role of DG in recall.
In the first experiment, cohorts of DG-Halo mice or DG-GFP mice were conditioned in the absence of DG illumination and then received two context tests with continuous DG illumination. The first test occurred in a neutral context (context C) that shared multiple features with the shocked one, and the second occurred in the shock context itself (Fig. 7A). As expected, DG-GFP mice discriminated between the two contexts, as evidenced by higher freezing in the shock context than in the neutral one (Fig. 7B). As predicted, the DG-Halo mice did not distinguish well between the two contexts, freezing at similar levels in both context tests (Fig. 7B). RM-ANOVA of the freezing data from the two context tests yielded a significant virus × context interaction (F(1,18) = 7.97, p = 0.0113). Follow-up pairwise comparisons confirmed that freezing in the shocked context exceeded that in the neutral context in DG-GFP control mice (Holm–Sidak test: t(9) = 3.99, p = 0.0063) but not in DG-Halo mice (t(9) = 0.28, p = 0.9547). Furthermore, as predicted, in the neutral context freezing of DG-Halo mice exceeded that of DG-GFP mice (F(1,9) = 14.20, p = 0.0044), but this was not the case in the shocked context (F < 1). The discrimination index ([Shock − Neutral]/[Shock + Neutral]) also differed significantly between groups (t(9) = 2.87, p = 0.0184; Fig. 5C).
In the experiment just reported, the generalization test occurred in a novel context. As a result, at least in the simulations, the expression of fear in the generalization context was influenced by recall as well as by encoding of the context. As elaborated in the Discussion, the increased fear observed with DG suppressed may thus reflect a role of DG in encoding rather than in recall. The second experiment was designed to more definitively demonstrate a role for DG in recall. Mice were pre-exposed to the neutral context and conditioned in the similar shock context without DG manipulation. Then they were tested in the shocked context with or without DG suppression. Because representations of both contexts were created before the test, any effects of DG suppression during the test should reflect the contribution of DG to recall rather than to encoding.
New cohorts of DG-Halo and DG-GFP mice were pre-exposed to the similar context, context C, before fear conditioning in context A. Then, DG was illuminated during the subsequent test session in context A (Fig. 7D). During the test session, DG-Halo mice displayed a significant reduction in freezing compared with DG-GFP controls (Fig. 7E). RM-ANOVA on the freezing data from the test session confirmed a significant effect of virus (F(1,28) = 7.579, p = 0.0102). Simulations and behavioral data for the experiment are compared in Figure 7F. As in the previous simulations, BACON could reproduce the empirical results only when DG was allowed to participate in recall. This experiment strongly supports the involvement of DG in recall.
Discussion
We have confirmed that the DG has a robust role in context fear memory acquisition and demonstrated its participation in retrieval and extinction learning. Optogenetic suppression of dorsal DG activity during context fear training impaired acquisition of CFC. In our initial experiments, suppressing DG during re-exposure to the training context did not impair the expression of fear memory but attenuated fear extinction. Although DG neural activity was not required for the expression of fear in the trained context, the contribution of DG to recall was revealed in two procedures that challenged mice to distinguish between similar contexts. When a neutral context was similar to the shocked context, suppression of DG impaired the ability of mice to correctly express fear in the conditioned context and not in the neutral one.
Simulations using a biologically plausible model that incorporates conventional views of hippocampal contextual processing (BACON) indicated that most of our observations, as well as several important findings in the literature that may seem contradictory, are in fact all consistent with the hypothesis that DG is normally used during both acquisition and retrieval. The simulations closely paralleled the behavioral data when the model used DG during both acquisition and recall but not when DG was prevented from contributing to recall. It should be emphasized that the point of our simulation studies was not to test the validity of the BACON model, but rather was to determine whether (and how) the conventional views of hippocampal function that are built into the model could emulate both our own findings and seemingly discrepant ones.
The DG and retrieval
The relevance of DG to recall of hippocampal representations has been questioned both on theoretical grounds and based on evidence that DG suppression during recall has no apparent behavioral effect. In particular, our initial experiments and earlier published results (Nakashiba et al., 2012; Kheirbek et al., 2013) show that extensive DG suppression can fail to block the expression of conditioned context fear.
However, other reports suggest that DG is in fact used to access CA3 during recall. Optogenetic activation of the dentate granule cells that participated in CFC acquisition (i.e., engram cells) is sufficient to evoke fear in a novel context (Liu et al., 2012; Ramirez et al., 2013; Redondo et al., 2014; Ryan et al., 2015), suggesting that the activity of DG cell ensembles can initiate context memory retrieval, although this does not prove that DG is used during natural recall. More direct evidence for a role of DG in natural recall is provided by the finding that selectively suppressing the relatively small group of engram cells attenuates CFC expression during re-exposure to the trained context (Denny et al., 2014).
It may seem paradoxical that suppressing a relatively small group of cells during retrieval has a substantial effect in the Denny et al. (2014) experiments, whereas suppressing a much larger group of cells in our own study and the study by Kheirbek et al. (2013) has no effect. However, the simulations performed using BACON suggest that these apparently discrepant observations are not in fact inconsistent. As explained in Results and conceptualized in Figure 6, the suppression of a large random set of cells during recall does not prevent accurate recall because the indirect path input to CA3 that remains, together with direct path input, are sufficient for correct recall, so long as very similar contexts do not have to be discriminated. However, when only DG cells that were active during encoding are selectively suppressed, the DG cells that remain active are those of normally encoded, nonfeared contexts. As a result, the nonfeared contexts are recalled, and little fear is expressed. The idea that suppression of a sparse neuronal ensemble in hippocampus can lead to artificial activation of a different ensemble and thereby influence memory performance is supported by recent IEG studies (Tanaka et al., 2014; Stefanelli et al., 2016) and electrophysiological recordings (Trouche et al., 2016).
Although context fear can be retrieved in the absence of neural activity in DG, the BACON simulations and our behavioral experiments illustrate that this comes at the cost of impaired recall accuracy. The impairments in accuracy were revealed in two experiments in which mice were challenged to distinguish between the conditioning context and a similar neutral one. When mice were conditioned in one context and then tested in a similar neutral one that was new to them, the suppression of DG increased the generalization of context fear. However, when mice were first pre-exposed to the neutral context and then fear conditioned and tested, the suppression of DG increased generalization from the neutral context to the similar conditioning context. Although both of these findings appear to reflect the role of DG in minimizing interference among different context representations, BACON simulations suggest that two distinct mechanisms can be involved. BACON predicts that when, as in the first experiment, the neutral similar context is novel at the time of the generalization test, DG participates in the encoding of its representation during the test itself. Fear expression during the test therefore depends on competition for retrieval between representations of the newly encoded context and the conditioning context. Suppressing DG during the first exposure to the neutral context would impair its encoding, thereby putting it at a disadvantage when competing with the (normally encoded) conditioning context during the generalization test. Thus, in the first experiment the increased fear generalization during DG suppression may reflect impairments to encoding as much as to retrieval. In contrast, when, as in the second experiment, both the neutral context and the conditioning context are encoded before any manipulation of DG, the effect of DG suppression must reflect participation of DG in recall. The BACON simulations suggest that DG contributes to recall by enhancing the probability that CA3 pattern completes the correct representation from among similar context representations.
The DG and extinction
A wide range of observations suggests that extinction is an independent, highly context-specific form of learning to inhibit fear, not an erasure of the fear itself. Indeed, since the time of Pavlov extinction has been hypothesized to constitute new learning rather than unlearning because the original learned response can resurface with the passage of time after extinction (Pavlov, 1927), after a context shift (Bouton, 2004), or via other behavioral manipulations (Rescorla and Heth, 1975; Bouton, 2002). Extinction and acquisition memories appear to coexist, with different situations favoring retrieval of one memory or the other. The hippocampus has been hypothesized to control this selective retrieval. For instance, the renewal of fear of a tone conditioned stimulus (Bouton and Bolles, 1979) activates hippocampal projections to prefrontal cortex (Jin and Maren, 2015) and is impaired by hippocampal lesions, leading to the hypothesis that hippocampal mechanisms govern retrieval of fear versus fear extinction memories (Ji and Maren, 2007).
The role of hippocampus in the extinction of contextual fear is less clear. Certainly, one role is to activate the fear responses that are a precondition for extinction learning. However, because the suppression of DG did not impair fear expression during extinction sessions, we hypothesize that the DG contributes to extinction learning through a different mechanism. One possibility is that the absence of shock during extinction causes the conditioning context to be perceived as a new context. Consistent with this hypothesis, there is evidence that context fear extinction causes a new context representation to be generated in the hippocampus. Context fear extinction causes CA1 place cells to remap (i.e., adopt new place fields), similar to what is observed when an animal is moved from one context to another (Wang et al., 2015). In addition, context fear acquisition and extinction elicit IEG activity in unique ensembles of CA1 neurons, which have been hypothesized to support distinct acquisition and extinction memories (Tronson et al., 2009). Suppression of neural activity in DG might impair encoding of this new extinction context in the same way that suppression affects processing of the generalization context described above. Impaired encoding of the extinction context would increase the probability that the original (fearful) context representation is continually activated, thereby maintaining fear expression despite extinction training. Impaired context fear extinction has also been reported after the suppression of adult neurogenesis in DG (Deng et al., 2009; Pan et al., 2012).
Summary
Our data identify DG as contributing to both context fear learning and recall. Its role in learning encompasses both fear acquisition and fear extinction. Although context fear can be expressed in the absence of DG neural activity, the role of DG in fear expression is most directly revealed when very similar contexts must be distinguished. Our data, as well as other recent findings, could be reproduced using a physiologically realistic model of hippocampal function supposing that both memory acquisition and retrieval involve coordinated activity of DG and CA3. The findings encourage further study of DG circuit function and plasticity as a way to identify mechanisms through which context generalization, fear acquisition, and fear extinction can be modulated. Because fear generalization (Lissek et al., 2010; Kheirbek et al., 2012) and extinction (Bouton et al., 2001; Mineka and Zinbarg, 2006) are believed to play important roles in the etiology and treatment of anxiety disorders, a more thorough understanding of the DG contributions to these processes will likely help to identify more effective therapeutic strategies.
Footnotes
This work was supported by National Institutes of Health Grants R01MH102595 and ROOMH083943 to M.R.D.; R21 EY026446 to B.V.Z. and M.R.D.; R01 MH062122 to M.S. Fanselow and F.B.K.; Human Frontiers Science Program Grant HFSP RGP0041 to B.V.Z.; NIH F31MH111243 and T32MH106454 to A.F.L.; and UT Brain Grant UTS-NNRI 365289 to B.V.Z. and M.R.D. We thank Dr. Michael D. Mauk for thoughtful discussion and suggestions on this manuscript. We thank Drs. Raymond A. Chitwood and Jared B. Bowden for guidance on field potential recordings. We thank Hee Ju Kim, Jennifer Tribble, Alexa Hassien, and Taylor Copeland for assistance with surgery and histology.
The authors declare no competing financial interests.
- Correspondence should be addressed to Dr. Michael R. Drew, Center for Learning and Memory, University of Texas at Austin, 1 University Station C7000, Austin, TX 78712. mdrew{at}utexas.edu