Skip to main content

Main menu

  • HOME
  • CONTENT
    • Early Release
    • Featured
    • Current Issue
    • Issue Archive
    • Collections
    • Podcast
  • ALERTS
  • FOR AUTHORS
    • Information for Authors
    • Fees
    • Journal Clubs
    • eLetters
    • Submit
    • Special Collections
  • EDITORIAL BOARD
    • Editorial Board
    • ECR Advisory Board
    • Journal Staff
  • ABOUT
    • Overview
    • Advertise
    • For the Media
    • Rights and Permissions
    • Privacy Policy
    • Feedback
    • Accessibility
  • SUBSCRIBE

User menu

  • Log out
  • Log in
  • My Cart

Search

  • Advanced search
Journal of Neuroscience
  • Log out
  • Log in
  • My Cart
Journal of Neuroscience

Advanced Search

Submit a Manuscript
  • HOME
  • CONTENT
    • Early Release
    • Featured
    • Current Issue
    • Issue Archive
    • Collections
    • Podcast
  • ALERTS
  • FOR AUTHORS
    • Information for Authors
    • Fees
    • Journal Clubs
    • eLetters
    • Submit
    • Special Collections
  • EDITORIAL BOARD
    • Editorial Board
    • ECR Advisory Board
    • Journal Staff
  • ABOUT
    • Overview
    • Advertise
    • For the Media
    • Rights and Permissions
    • Privacy Policy
    • Feedback
    • Accessibility
  • SUBSCRIBE
PreviousNext
Research Articles, Systems/Circuits

Theta Oscillons in Behaving Rats

M. S. Zobaer, Nastaran Lotfi, Carli M. Domenico, Clarissa Hoffman, Luca Perotti, Daoyun Ji and Yuri Dabaghian
Journal of Neuroscience 14 May 2025, 45 (20) e0164242025; https://doi.org/10.1523/JNEUROSCI.0164-24.2025
M. S. Zobaer
1Department of Neurology, University of Texas Health Science Center at Houston, Houston, TX 77030
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Nastaran Lotfi
1Department of Neurology, University of Texas Health Science Center at Houston, Houston, TX 77030
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Carli M. Domenico
2Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Clarissa Hoffman
1Department of Neurology, University of Texas Health Science Center at Houston, Houston, TX 77030
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Luca Perotti
3Department of Physics, Texas Southern University, Houston, TX 77004
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Daoyun Ji
2Department of Neuroscience, Baylor College of Medicine, Houston, TX 77030
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Daoyun Ji
Yuri Dabaghian
1Department of Neurology, University of Texas Health Science Center at Houston, Houston, TX 77030
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Yuri Dabaghian
  • Article
  • Figures & Data
  • Info & Metrics
  • eLetters
  • Peer Review
  • PDF
Loading

Abstract

Recently discovered constituents of the brain waves—the oscillons—provide a high-resolution representation of the extracellular field dynamics. Here, we study the most robust, highest-amplitude oscillons recorded in actively behaving male rats, which underlie the traditional θ-waves. The resemblances between θ-oscillons and the conventional θ-waves are manifested primarily at the ballpark level—mean frequencies, mean amplitudes, and bandwidths. In addition, both hippocampal and cortical oscillons exhibit a number of intricate, behavior-attuned, transient properties that suggest a new vantage point for understanding the θ-rhythms’ structure, origins and functions. In particular, we demonstrate that oscillons are frequency-modulated waves, with speed-controlled parameters, embedded into a weak noise background. We also use a basic model of neuronal synchronization to contextualize and to interpret the oscillons. The results suggest that the synchronicity levels in physiological networks are fairly low and are modulated by the animal’s physiological state.

  • hippocampo-cortical circuit
  • neural synchronization
  • oscillons
  • theta rhythm

Significance Statement

Oscillatory extracellular fields modulate neural activity at multiple spatiotemporal scales and hence play major roles in physiology and cognition. Traditionally, these fields’ organization is described via harmonic decompositions into θ, γ and other “brain waves”. Here we argue that these constructs are only approximations to the physical oscillatory motifs–the oscillons, which represent the actual temporal architecture of synchronized neural dynamics. Focusing on the low-frequency θ-oscillons, we demonstrate correspondences with the traditional θ-waves for averaged, lento-changing characteristics, and discuss several new properties and dynamics that heretofore remained unexplored. Specifically, speed-coupled frequency modulations support oscillatory models of brain wave dynamics, suggesting a novel, “FM” perspective on the information exchange in hippocampo-cortical network and linking electrophysiological data to theoretical models of neuronal synchronization.

Introduction

Synchronized neural activity induces rhythmically oscillating electrical fields that modulate circuit dynamics at multiple spatiotemporal scales (Buzsáki, 2011; Buzsáki et al., 2012; Colgin, 2016). The corresponding local field potentials (LFPs) are easily recorded and widely used for describing varieties of neurophysiological phenomena (Kopell et al., 2010; Thut et al., 2012). However, our perspective on the LFP structure and properties, as well as our interpretation of its functions depend inherently on the techniques used in data analyses. Currently, most studies are based on Fourier paradigm, in which the oscillating LFP are viewed as a superposition of harmonics with constant frequencies (van Vugt et al., 2007; Brigham, 1988). The familiar θ, γ, and other “brain waves” are combinations of such harmonics, occupying a particular frequency band (Buzsáki, 2011; Colgin, 2016) (Fig. 1A).

Figure 1.
  • Download figure
  • Open in new tab
  • Download powerpoint
Figure 1.

Oscillons and spectral waves in cortical LFP. A, Fourier spectrogram: the high-power stripe between about 4 and 12 Hz marks the conventional θ-band, the slow-γ domain lays between 20 and 45 Hz. B, The corresponding full Padé spectrogram, same time resolution, shows a pattern of “flexible” frequencies, both stable and unstable. The vertical position of each dot marks a specific frequency value, the horizontal position marks the corresponding time, and the color indicates the instantaneous amplitude (colorbar on the right). C, Most frequencies, (typically over 80% , dark segment on the pie diagram), are unstable or “noise-carrying”. Removing them reveals the denoised Padé spectrogram, on which the stable frequencies trace out regular timelines–spectral waves. Color change along each spectral wave encodes the corresponding time-dependent amplitude (Eq. 1). D, Combining a particular spectral wave, νq(t), with its amplitude, Aq(t), yields an individual oscillon, as indicated by Equation 1. Shown is a one-second-long segment of the cortical θ-oscillon (red trace) and the slow-γ oscillon (blue trace). Notice that summing just these two oscillons (first two terms in Eq. 2 approximates the full LFP profile (gray line) quite closely. For more θ and slow-γ waveforms see Extended Data Figure 1-1. E, Numerical reliability: dotted cyan line shows a simulated spectral wave with the mean frequency ν0 = 8 Hz, a single modulating frequency, Ω1/2π ≈ 0.6 Hz, and the modulation depth ν1 ≈ 2 Hz, ν(t)=ν0+ν1cos(Ωt) . Dark red dots mark the stable frequencies reconstructed via the DPT procedure directly from the corresponding oscillon, ℓ(t)=e2πi∫ν(t)dt , just as is done with the data. The reconstructed and the input spectral waves match. F, The superposition of all oscillatory inputs (magenta) nearly matches the original LFP signal (gray trace). The difference is due to noise (ξ(t), dotted black), carried by the unstable frequencies, which typically accounts for less than 5–7% of the signal’s net power during active behaviors (pie diagram), and about 10–15% during quiescence. Data sampled in a 6 months old, wake male rat during active behavior.

Figure 1-1

Comparative waveforms of Fourier θ-wave (4 − 12 Hz) and θ-oscillon (top panel) and slow-γ wave, Fourier-filtered between 20 and 40 Hz, compared to slow-γ oscillon (bottom panel). Despite similar oscillation rates, the wave shapes are different. Download Figure 1-1, TIF file.

Despite their widespread use, Fourier decompositions are known to offer limited detail in capturing LFP dynamics, particularly for transient, irregular, or noisy data, and may therefore obscure the underlying brain wave structure. A recently proposed alternative, the Discrete Padé Transform (Throughout the text, terminological definitions are given in italics). (DPT), allows replacing the packets of Fourier harmonics with solitary waves that adapt their frequencies to the fields’ ongoing structure (Bessis, 1996; Bessis and Perotti, 2009; Perotti et al., 2013) (Fig. 1B). As it turns out, there are two kinds of such “flexible” frequencies: those that change over time in a regular manner, leaving distinct, contiguous traces on the spectrogram, and those that assume sporadic values from moment to moment. Mathematically, the “irregular” harmonics represent noise, ξ(t), while the “regular” frequencies define the oscillatory component of the signal (Perotti et al., 2019; Zobaer et al., 2022) (Fig. 1C).

At high temporal resolutions, the “timelines” of regular frequencies produce undulant patterns—the spectral waves (Fig. 1C). These waves vacillate around their respective lento-changing means, and span over the frequency domains attributed to the traditional, Fourier-defined rhythms. For example, the lowest-frequency spectral wave, prominent during active behavior, occupies the range that roughly corresponds to the traditional θ-domain (Jung and Kornmüller, 1938; Buzsáki, 2002, 2005; Burgess and O’Keefe, 2005; Colgin, 2013). The following spectral wave occupies the slow-γ domain (Colgin, 2015), and so forth (Fig. 1C). The gap between the mean frequencies is typically larger than the undulations’ magnitudes, which allows keeping the standard nomenclature, e.g., using the notation νθ(t) for the θ-domain spectral wave, νγs(t) for the slow-γ spectral wave, etc. Each contiguous frequency, νq(t), contributes with a certain amplitude, Aq(t), and accumulates a phase, ϕq(t), giving rise to a compound wave,ϑq(t)=Aqeiϕq(t),(1) which we refer to as brain wave oscillon, or just oscillon for short (Perotti et al., 2019; Zobaer et al., 2022). The superposition of the oscillons and the noise, ξ(t), amounts to the original LFP,ℓ(t)=Aθeiϕθ(t)+Aγseiϕγs(t)+…+ξ(t).(2) Typically, the main contribution is made by the θ-oscillon, then the next biggest contribution comes from the slow-γ oscillon, etc. (Fig. 1D).

Importantly, all oscillon parameters are obtained empirically from the recorded data: the amplitudes, the shapes of the spectral waves and the noise exhibit robust, tractable characteristics that reflect physical organization of the synchronized neuronal activity (Restrepo et al., 2005; Arenas et al., 2008; Liao et al., 2011; Burton et al., 2012; Mi et al., 2013). In other words, the elements of the decomposition 2 can be interpreted not only as structural motifs, but also as functional units within the LFP waves. This raises many questions: what are the physiological properties of the oscillons? Which of their features were previously captured through Fourier analyses, and how accurately? Do the oscillons reveal any new operational aspects of the brain waves?

In the following, we focus on the hippocampal and the cortical θ-oscillons recorded in male rats, shuttling between two food wells on a linear track. The experimental specifics are briefly outlined in Section 2, while computational details are provided in Bessis (1996), Bessis and Perotti (2009), Perotti et al. (2013, 2019), and Zobaer et al. (2022). In Section 3, we demonstrate that some qualities of the θ-oscillons parallel those of the traditional θ-waves; yet many of their characteristics have not been addressed by conventional analyses. In Section 4, we utilize a basic model of neuronal synchronization to illustrate and contextualize our empirical observations. Finally, in Section 5, we highlight a new perspective on information exchange within the hippocampo-cortical network, as suggested by the newfound architecture of θ-rhythmicity.

Methods

Experimental procedures

Data were recorded from the CA1 pyramidal cell layer of male Long-Evans rats’ hippocampus and from anterior cingulate cortex (Domenico et al., 2021). The animals were trained in a familiar room to run back and forth on a rectangular, 3.5-meters-long, track for food reward (Fig. 2A). The daily recording procedure consisted of two 30 min running sessions. A typical run between the food wells takes about 30 s. Uninterrupted fast moves typically last less than 5 s, followed by slowdowns at the corners and track ends. Two diodes were mounted over the animal’s head to track its positions, at 33 Hz rate, with a spatial resolution of about 2 mm. Further details on surgery, tetrode recordings and other procedures can be found in Domenico et al. (2021). The data analyzed here are not included in Domenico et al. (2021), but experimental details are identical.

Figure 2.
  • Download figure
  • Open in new tab
  • Download powerpoint
Figure 2.

Waves and oscillons. A, Data recorded during a fast move over the long straight segment of a linear track. The food wells shown by blue dots. B, A Fourier-defined θ-wave (gray), its amplitude (dotted line on top) and its instantaneous frequency produced by Hilbert transform (black line, scale on the right), compared to the θ-oscillon (pink) and its amplitude (dotted brown line). See also Extended Data Figure 2-1. A segment of the spectral wave is shown on Figure 1C. C, W-spectrogram: black line shows Welch-power profile computed for a particular 600 ms long segment a hippocampal spectral wave, centered at 2.4 s. Arranging such profiles next to each other in natural temporal order yields a 3D landscape that illustrates frequency dynamics. D, The instantaneous Fourier frequency yields a defeatured W-spectrogram that does not resolve rapid frequency modulations. E, DTW comparison of two profiles (red and black). Paired points shown by gray lines. One-to-many connections mark the stretchings that compensate shape mismatches. F, Two concurrent segments of the hippocampal (blue), and the cortical (orange), spectral waves, containing ∼300 data points each (time-wise–about 40 ms), normalized by their respective means and shifted vertically into the [0, 1] range. After the alignments, the number of points increases by 50% (note the stretched-out x-axis). The net separation between the aligned curves, measured in Euclidean metric and normalized to the original curve lengths quantifies the shape difference between the waveforms, in this case ∼7% .

Figure 2-1

Hilbert transform. A. Fourier-defined θ-wave (gray waveform in the background) shown with its amplitude (dotted line on top) and the corresponding instantaneous frequency (black line, placed according to the right scale) produced by Hilbert transform. Pink waveform in the foreground shows θ-oscillon and its amplitude computed from the net contribution of stable poles contributing to spectral wave (dotted brown line). B. Fourier-defined slow-γ wave (20 − 40 Hz), compared to the slow-γ oscillon. Amplitudes and frequencies are as above. The amplitude of the latter is lower because it does not include the noise component. Download Figure 2-1, TIF file.

Signal processing

The original LFP data were sampled at Sr = 8 kHz rate, and interpolated to S∼r=36  kHz, to improve the quality of the spectral wave reconstructions at low frequencies. The signals were filtered between 0 and 60 Hz, and downsampled 2 ≤ m ≤ 4 times, producing m nearly identical, interlaced subseries, which helped to ensure robustness and consistency of the results. In particular, these procedures permitted using high time resolutions (Tϖ≈ 12–24 ms time windows), simultaneously with high-frequency resolution of the LFP dynamics–nϖ=100 to nϖ=400 data points for each subseries, which yields Padé approximants of orders N = 50–200. To attain maximal contiguity of the spectral waves, windows were shifted by one data point. These results remain stable under parameter variations, e.g., changes of the sliding window width and adding small amount of noise, δξ≈0.01% of the total amplitude. The unstable frequencies were identified via the Froissart doublets, with the critical pole-zero distance dF = 10−6 (Bessis, 1996; Bessis and Perotti, 2009; Perotti et al., 2013, 2019). The net contribution of the unstable frequencies carries the noise amplitude.

Since the poles are computed independently at each time step, based on a finite number of data points, the patterns of reconstructed frequencies contain gaps and irregularities. To capture the underlying continuous physical processes, we interpolated the “raw” spectral traces over uniformly spaced time points and used Welch transform to extract the embedded frequencies.

Hilbert transform is used to evaluate the imaginary part of a signal, and with it the instantaneous phases, frequencies and amplitudes (Fig. 2B). The resulting instantaneous frequency corresponds to DPT’s mean frequency, but its dynamic is much less detailed, and the embedded (modulating) frequencies are not resolved at all. In DPT, the oscillons’ net amplitude is obtained as the net sum of amplitudes carried by stable frequencies. The oscillons’ mean frequency is obtained as their spectral waves’ moving mean, over periods exceeding the characteristic undulation span.

Welch transform was designed for estimating power spectra in transient signals (Welch, 1967). The signal is first split into a large number of highly overlapping shorter segments, and then the power spectrum of each segment is evaluated independently. The power profile of each segment thus marks the most prominent frequencies appearing over the corresponding time interval. Arranging such power profiles next to each other in natural order, one gets three-dimensional (3D) W-spectrograms illustrated on Figure 2C.

By construction, the lateral sections of W-spectrograms are the instantaneous power profiles, whereas the longitudinal sections show the peaks’ dynamics, used to trace the evolution of the embedded frequencies. For an illustration, a W-spectrogram built for the instantaneous Fourier frequency, captures major frequency disturbances, but does not resolve rapid frequency modulations (Fig. 2D).

Dynamic time warping (DTW) is used to quantify similarity between two series of features, e.g., for recognizing similar speech patterns. The method is based on applying series of stretches that maximize alignment between two profiles at minimal cost, without omitting elements or scrambling their order (Sakoe and Chiba, 1978; Berndt and Clifford, 1994; Salvador and Chan, 2007). DTW is particularly suitable for comparing dynamic waveforms, whose parts may alternately lag and outpace one another, such as spectral waves (Berndt and Clifford, 1994; Salvador and Chan, 2007; Neamtu et al., 2018). Analyses performed using MATLAB, including its dtw and alignsignals functions (Fig. 2E,F).

Results

Shape of the θ-oscillons. Similarly to the traditional hippocampal and cortical θ-waves, denoted below as fθh and fθc , the θ-oscillons, ϑθh and ϑθc , increase their amplitudes during active moves and diminish (but do not vanish) during slowdowns and quiescence (Buzsáki, 2002, 2005; Burgess and O’Keefe, 2005; Colgin, 2013). The following analyses target specifically the θ-oscillons’ structure during fast moves along the straight segments of the track (speed s over 2 cm/sec), lasting 5 s or less (Fig. 2A). Due to the removed noise, the θ-oscillons’ amplitudes are lower than the amplitudes of the corresponding Fourier-waves, on average, by 5–10% (t-test, p < 10−11, CI 95% ), values computed for 32 waveforms. The average frequency span (modulation depth) of the hippocampal θ-oscillons is between 3 and 13.5 Hz, and the cortical θ-oscillons are typically confined between 4 and 12.5 Hz (p < 10−10, 95% CI both). Although the individual spectral waves’ troughs and peaks can occasionally escape these limits or get confined into narrow strips, their general width conforms with the traditional θ-bandwidths (Fig. 1A,B).

To put these observations into a perspective, note that there exist several consensual θ-frequency bands, e.g., from 4 to 12 Hz, from 5 to 10 Hz, from 6 to 10 Hz, from 6 to 12 Hz, from 5 to 15 Hz, etc. Brandon et al. (2013), Huxter et al. (2008), Mizuseki et al. (2009), Harris et al. (2002), Jezek et al. (2011), Kropff et al. (2021), Richard et al. (2013), Young et al. (2021), Chen et al. (2011), Ahmed and Mehta (2012), Zheng et al. (2015), and Kennedy et al. (2022). The shapes of the corresponding Fourier θ-waves differ by about ∼6% , as measured by the relative amount of adjustments required to match a pair of waveforms by the DTW method (Berndt and Clifford, 1994; Salvador and Chan, 2007; Neamtu et al., 2018), Figure 3B. In other words, the shapes of the traditional θ-waves are fuzzily defined. In contrast, the frequency profiles of the θ-oscillons are determined squarely, over each time interval, by the shapes of their respective spectral waves, which may, at times, drop below 3 Hz, get as high as 20 Hz, or narrow into a tight 1–2 Hz band that typically stretches along the mean θ-frequency.

Figure 3.
  • Download figure
  • Open in new tab
  • Download powerpoint
Figure 3.

General properties. A, The lowest spectral wave occupies the domain that is generally attributed to the θ-frequency band. The color of each dot represents the amplitude, as on Figure 1. The spectral peaks and troughs range from about 17 to about 2 Hz (gray boxes). B, The hippocampal θ-oscillon’s spectral wave, made visible through three “frequency slits” that represent three most commonly used θ-bands, 4–12 Hz, 5–15 Hz, and 6–11 Hz (gray stripes). The frequencies that fit into a slit produce the corresponding Fourier wave, shown as red-shaded traces on the bottom right panel. Note that the spectral waves are crosscut by all θ-bands. The Fourier waves are close to each other (DTW distances D(fθ1h,fθ2h)≈6±2% , D(fθ2h,fθ3h)≈5±1.9% , D(fθ3h,fθ1h)≈8±2.1% ) than from the θ-oscillon, (e.g., D(ϑθh,fθ2h)≈6.1±2% ), which, in turn, is closer to the original LFP, D(ℓh,ϑθh)=4±1.4% . All p < 10−9, CIs 95% . C, A longer segment of a hippocampal-θ spectral wave. The nearly constant solid black trace in the middle shows the instantaneous Fourier θ-frequency. The dashed purple line shows the spectral wave’s moving average, which provides a lucid description of the θ-rhythm’s trend. The corresponding waveform, shown at the bottom is regular when the mean is steady (pink box), and corrugates when the mean is perturbed (blue boxes). D, The moving mean of the hippocampal and cortical θ-oscillons’ spectral waves (blue and red curves respectively) follow the speed’s time profile, s(t) (dashed gray). The latter is scaled vertically for illustrative purposes (see also Extended Data Fig. 3-1). E, The amplitudes of hippocampal θ-oscillon also co-vary with the speed—an effect captured previously via Fourier analyses (Young et al., 2021; Kennedy et al., 2022).

Figure 3-1

Speed vs. mean θ-frequency coupling. A. Additional examples demonstrating covariance between the moving mean of the hippocampal (blue) and the cortical (red) θ-frequency with the rat’s speed (dashed brown curve). The latter is scaled vertically and shifted as on Fig. 4, to match the frequency ranges. The instantaneous frequency of the traditional, Fourier-defined θ-waves is shown by solid black curve, as on Fig. 3. A five-fold (top panel) and ten-fold (bottom panel) vertical stretch of the Fourier-frequency produces the dotted black curve, whose similarity to the spectral waves’ means explains the general correspondence between our results and conventional evaluations of speed-frequency couplings. B. Mean frequency profile of a hippocampal θ-oscillon, left-shifted by 300 ms (right scale), vs. the mean frequency of a hippocampal slow-γ oscillon, dark lilac, right-shifted by 500 ms (left scale), shown with the rat’s speed profile. Download Figure 3-1, TIF file.

Overall, θ-oscillons are similar to their Fourier counterparts: the DTW-difference between their waveforms during active moves are small, D(ϑθh,fθh)≈6.2±1.7% and D(ϑθc,fθc)≈7.1±1.5% , respectively, relative to the waveforms’ length p < 10−10. However, θ-oscillons capture the shape of the original LFP waves better, both in the hippocampus (D(ℓh,fθh)≈(4.2±1.1)D(ℓh,ϑθh) ), and in the cortex D(ℓc,fθc)≈(5.1±0.92)D(ℓc,ϑθc) , p < 10−11 Fig. 3B). Between themselves, the shapes of the hippocampal and the cortical oscillons differ about as much as the traditional θ-waves: over 1–2 s segments, D(ϑθh,ϑθc)≈D(fθh,fθc)≈7±0.8% , p < 10−9, all CIs 95% .

Coupling to locomotion. The θ-oscillons’ amplitudes and their mean frequencies are coupled to speed, as one would expect based on a host of the previous studies of θ-rhythmicity (Fig. 3C, Richard et al., 2013; Kropff et al., 2021; Young et al., 2021; Kennedy et al., 2022). Nevertheless, this observation is informative, since oscillons are qualitatively different constructions. While the traditional brain waves’ frequency is evaluated by tracking their Fourier-envelope, the oscillons’ mean frequency is obtained as their spectral waves’ moving mean, over periods comparable with largest undulation span (∼200 ms). Yet, the two outcomes are consistent, although the oscillon provides a more nuanced description of the trend dynamics: the mean θ-oscillon frequencies in both the hippocampus and cortex, νθ,0h and νθ,0c , vary more than their Fourier counterparts, which exhibit only limited and sluggish changes (Extended Data Fig. 3-1). As a result, the co-variance of the oscillons’ mean frequency with the rat’s speed is much more salient (Fig. 3D). Scaling the Fourier frequency up by an order of magnitude makes the correspondence with the oscillons more conspicuous (Extended Data Fig. 4-1), which further illustrates the fact that the traditional, Fourier descriptions capture smoothed, blunted dynamics of the mean θ-rhythmicity.

Spectral undulations are the oscillons’ distinguishing feature that captures subtle details of the θ-rhythm’s cadence (Fig. 3C). The semi-periodic appearance of the spectral waves suggests that their ups and downs should be decomposable into a harmonics series,νθ(t)=νθ,0+νθ,1cos(Ωθ,1t+ϕθ,1)+νθ,2cos(Ωθ,2t+ϕθ,2)+…,(3) where the modulating, or embedded frequencies (The omission of the “h” and “c” superscripts here and below indicates that the formula or notation applies to both the hippocampal and cortical cases), Ωθ,i, the corresponding modulation depths, νθ,is, and the phases, ϕθ,i evolve about as slowly as the mean frequency, νθ,0 (Fig. 3D). By itself, this assumption is patently generic–given a sufficient number of terms, a suitable expansion 3 can be produced, over appropriate time periods, for almost any data series (Corduneanu, 2009). Question is, whether spectral waves’ expansions can be succinct, hold over sufficiently long periods and whether their terms are interpretive in the context of underlying physiological processes.

To test these possibilities, we interpolated the “raw” frequency patterns over uniformly spaced time points and obtained contiguous spectral waves over about 5.5 s–the maximal time that the rat can run uninterruptedly over the straight segment of the track (Fig. 4A). This wave was then split into 600 ms long, strongly overlapping (by 99.9% ) segments, for which we computed power profiles using method (Welch, 1967; Proakis and Manolakis, 1996). Arranging the results along the discrete time axis yields three-dimensional (3D) W-spectrograms, whose lateral sections consist of the familiar instantaneous power-frequency profiles, with peaks marking the embedded frequencies, and whose longitudinal sections show the time dynamics of these peaks (Fig. 4B).

Figure 4.
  • Download figure
  • Open in new tab
  • Download powerpoint
Figure 4.

Spectral waves and embedded frequencies. A, The spectral patterns produced via shifting-window evaluation of instantaneous frequencies are intermittent (Fig. 3A). To recapture the underlying continuous spectral dynamics, we interpolated the raw datapoints over a uniform time series, thus recovering the hippocampal (left) and the cortical (right) spectral waves with uninterrupted shapes. B, The contiguous data series allow constructing 3D W-spectrogram on which each peak along the frequency axis highlights the dynamics of a particular embedded frequency. Altitudinal shadowing emphasizes higher peaks (colorbar along the vertical axis). Note that most peaks in both hippocampal (left) and the cortical (right) W-spectrograms are localized not only in frequency but also in time, indicating short-lived spectral perturbations. For more examples, see Extended Data Figure 4-1. The dynamics of these frequencies is coupled with the speed—higher speeds drive up the magnitudes of the embedded frequencies. The speed profile is scaled vertically and shifted horizontally to best match the frequency magnitudes (orange and black trace, respectively). While the response of the hippocampal frequency to speed is nearly immediate (about τh = 90 ± 24 ms delay, p < 10−7), the cortical response is delayed by about two θ-periods (τc = 250 ± 50 ms, p < 10−7). C, Examples of the individual cortical peaks’ sampled magnitudes (heights of the dots on the panels B) and the corresponding speeds (heights of the crosses) exhibit clear quasi-linear dependencies. D, The net magnitude of the spectral wave co-varies with the speed in the both hippocampus (delay in this case τh = 92 ms, left) and in the cortex (delay τc = 289 ms, right).

Figure 4-1

Additional examples of hippocampal (left column) and cortical (right column) W-spectrograms, illustrating the embedded frequency dynamics for the θ-oscillons. Dark red arrows point at the appearances of isolated peaks and the black arrows point at the “seedbeds” of peaks recurring at the same frequency. Download Figure 4-1, TIF file.

The results demonstrate that both hippocampal and cortical spectral waves are highly dynamic and complex. First, most peaks are localized not only in frequency but also in time: a typical peak grows and wanes off in about 200–300 ms, i.e., the embedded frequencies and the depth of modulation are highly transitive, changing faster than the mean frequencies by an order of magnitude (Zobaer et al., 2022). In other words, the representation 3 holds over relatively short periods (typically 1 s or less Perotti et al., 2019), and then requires corrections in order to account for rapidly accumulating changes. Thus, θ-oscillons may be viewed as steady oscillatory processes with a cycling frequency that drifts on the behavioral timescale around an average of νθ,0 ≈ 8 Hz and is modulated by a series of swift, transient vibrations.

Curiously, certain peaks in the W-spectrograms appear and disappear repeatedly near the same location along the Ω-axis, i.e., fast moves can consistently incite θ-vibrations at the same embedded frequencies, indicating restorative network dynamics (Goutagny et al., 2009). Other peaks appear sporadically, possibly reflecting spontaneously generated oscillations, resonances or brief external contributions (Fig. 4B, Zobaer et al., 2022). Furthermore, these events are coupled with the rat’s ongoing behavior: as the speed increases, the power flows into higher embedded frequencies (Ωis over 5 Hz) and then recedes as the speed drops, i.e., fast moves appear to drive spectral undulations both in the hippocampus and in the cortex.

To evaluate this effect, we identified the lateral sections of the W-spectrogram, w(t), that best aligned with the speed profile, s(t)—that is, those with the minimal DTW-difference, D(w, s)—and then determined the time shift, τ, required for optimal alignment. The results indicate that cortical responses tend to delay by about τ¯c=200--300  ms, while the mean hippocampal delay is shorter, about τ¯h=70−120  ms, p < 10−6, CIs 95% (Fig. 4B). With these shifts taken into account, the hippocampal and the cortical spectral waves are structurally closer to one another than are the corresponding oscillons (D(νθh,νθc)≈(0.6±0.22)D(ϑθh,ϑθc) , p < 10−5), which may be viewed as a highlight of the hippocampo-cortical frequency coupling.

Another surprising observation is that the peak magnitudes associated with the individual embedded spectral frequencies, Ωi (the coefficients of the oscillatory terms in the Eq. 2), tend to grow roughly proportionally to speed,νθ,i(t)≈αi+βi⋅sκi(t−τi),(4) where the exponents, κ¯h=1.24±0.32 and κ¯c=0.91±0.44 (permutation test p < 10−14), are evaluated from 50 peaks on at 10 hippocampal and 11 cortical W-spectrograms. To emphasize near-linearity (Pearson test, p < 10−6), an example of a linear regression is shown on Figure 4C. The coefficients αi and βi vary by about 35–55% (all p < 10−4, CI over 95% ) from one embedded frequency to another, in both brain areas.

On the one hand, the coupling 4 between the embedded frequency magnitudes and speed is foreseeable: linear modulation of extracellular fields’ base frequency by speed,νθ=νθ,0+β⋅s(t)⋅cos(ϕ(t)),(5) was hypothesized by J. O’Keefe and M. Recce 30 years ago, upon discovery of coupling between θ-phase shift, ϕ(t), and spiking probability (O’Keefe and Recce, 1993). This dependence was thenceforth used in oscillatory interference models for explaining the hippocampal place cell (O’Keefe and Recce, 1993; Burgess and O’Keefe, 2011) and the entorhinal grid cell (Burgess et al., 2007; Hasselmo et al., 2007; Burgess, 2008) firing. Several in vitro experiments (Giocomo et al., 2007; Giocomo and Hasselmo, 2008; Shay et al., 2012) and Fourier-based LFP analyses (Jeewajee et al., 2008) provide supporting evidence for these models (see however Domnisoru et al., 2013). Here, we find that θ-oscillons’ dynamics, extracted directly from in vivo electrophysiological data, conform with this hypothesis.

However, there are a few empirical distinctions between the physical speed-controlled oscillators and the idealized models (O’Keefe and Recce, 1993; Burgess et al., 2007; Hasselmo et al., 2007; Burgess, 2008; Burgess and O’Keefe, 2011). First, the actual coupling may deviate from strict linearity. Second, the frequency expansion may contain several oscillatory, speed-modulated terms similar to 3 or be overtly nonlinear, whereas the model expansion 5 contains only one linear term. Third, this dependence is highly dynamic, not steady. Four, the modulation parameters are particularized, i.e., peak- and time-specific, albeit they may be distributed around well-defined means. Also note that the W-spectrograms of the instantaneous Fourier frequencies do not capture these structures–they average the spectral dynamics out (Fig. 2D).

Noise. As mentioned in the Introduction, the qualitative difference between the regular and the irregular frequencies allows delineating the LFP’s noise component. While in most empirical studies “noise” is identified ad hoc, as a cumulation of irregular fluctuations or unpredictable interferences within the signal (Stein et al., 2005; Rowe et al., 2007; Ermentrout et al., 2008; Faisal et al., 2008; McDonnell and Ward, 2011), here noise is defined conceptually, based on intrinsic properties of Padé approximants to the signal’s z-transform that are mathematically tied to stochasticity (Bessis, 1996; Bessis and Perotti, 2009; Perotti et al., 2013). Being that noise is qualitatively distinct from oscillatory dynamics, its properties provide an independent, complementary description of the network’s state.

As indicated on Figure 1C, in a typical LFP, only a few frequencies exhibit regular behavior, and yet their combined contribution is dominant: the stochastic component, ξ(t), usually accounts for less than 5% of the signal’s amplitude, i.e., the noise level is generally low (Perotti et al., 2019; Zobaer et al., 2022). Structurally, the net noise component has undulatory appearance and can make positive or negative contributions to the net signal, and is also modulated by the rat’s physiological state (Perotti et al., 2014, 2019; Zobaer et al., 2022), Figure 5A,B. First, the noise amplitude tends to grow with speed (Fig. 5C), which suggests that increase of stochasticity is associated with the surge of the modulating vibrations (Fig. 4). However, the speed couples to noise weaker than to the oscillatory θ-amplitude or to the spectral wave (cortical separation D(ξc,s)=12.8±4% , hippocampal D(ξh,s)=11.5±2.5% , p < 10−5, Fig. 4D). Yet, both hippocampal and cortical noise levels exhibit affinity, D(ξh,ξc)≈15±3% . Most strongly, the noise is coupled to the amplitude of the oscillon that it envelopes, D(ϑθh,ξh)=1.5±0.74% , D(ϑθc,ξc)=1.65±0.5% , t-test, p < 10−5, i.e., noise grows and subdues with the ups and downs of the physical amplitude of the extracellular field (Fig. 5B). As the animal moves out of the θ-state, noise amplifies by an order of magnitude and decouples from the locomotion, indicating an onset of a “non-theta” state (Mysin and Shubina, 2023), in which the amplitude of θ-oscillon drops by about 50–80% (Fig. 5B, see also Hoffman et al., 2023).

Figure 5.
  • Download figure
  • Open in new tab
  • Download powerpoint
Figure 5.

Spectral wave, noise and speed. A, Hippocampal spectral wave grows magnitude with speed (dashed black curve), which reflects the increasing level of synchronization (see below). Shaded area highlights a period of slow motion, during which the noise escalates. The original LFP amplitude is shown in the background (gray trace), for reference. B, The dynamics of the regular part of the LFP (red trace) and the noise component (dotted black trace), obtained for a 12-second lap. The original LFP is in the background (gray). C, The hippocampal (left panel) and cortical (right panel) noise levels follow speed, but more loosely than the oscillon’s amplitude.

Kuramoto Oscillon

What is the genesis of the oscillons? It is commonly believed that the rhythmic LFP oscillations emerge from spontaneous synchronization of neuronal activity, although the specifics of these processes remain unknown (Restrepo et al., 2005; Arenas et al., 2008; Liao et al., 2011; Burton et al., 2012; Mi et al., 2013). A comprehensive analysis of the recorded data or modeling at the physiological level of detail is prohibitively complex and technically out of reach. Nevertheless, the essence of synchronization can be illustrated with simple computational models, which helps clarifying the observed phenomena. Specifically, the celebrated Kuramoto model allows tracing the onset of synchronization in a population of oscillating units, using a single parameter that describes the coupling strength (Kuramoto, 1975; Strogatz, 2000). Under fairly generic assumptions, these oscillators, or phasors, can qualitatively represent (map to) the recurring activity of individual neurons (Izhikevich, 1999a, 1999b; Hoppensteadt and Izhikevich, 1997, 1998, 1999), so that their net population dynamics captures the ebb and flow of the mean extracellular field.

The behavior of each unit is described by a time-dependent phase, ϕm(t), that changes between 0 and 2π, inducing an oscillatory output, ℓm=ameiφm . The field produced by the population of M phasors is hence∑m=1Mameiφm(t)=AK(t)eiϕK(t),(6) where AK(t) is the total amplitude and ϕK(t) the net phase. Each individual phase is coupled to the mean phase through an equationφ˙m=2πνm+λAKsin(ϕK−φm),(7) where the dot denotes the time derivative and the constant λ controls the coupling. More extended discussions can be found in Kuramoto (1975) and Strogatz (2000), but in brief, such system can transition between two phases of behavior. For small couplings, different phases evolve nearly independently, proportionally to their proper angular speeds, ϕm ≈ 2πνm t. If these speeds are sufficiently dispersed, the phases remain out of sync and the net field remains small and irregular, AK(t) ≈ 0. As the coupling increases, the phases become more correlated. If the underlying frequencies are distributed close to a certain ensemble mean, ν¯m=ν , then the synchronized amplitude grows and regularizes with rising λ, and eventually produce a synchronous beat with the frequency ν.

From perspective of this discussion, this phenomenon is of interest because it yields a solitary “synthetic” oscillon, that helps illustrating properties of the physiological oscillons. As shown on Figure 6A, if the phasors’ proper frequencies are distributed closely (within about ±3 Hz) to the mean frequency of νθ,0 ≈ 8 Hz, then the net field’s dynamics is characterized by a single spectral wave that changes its properties according to the synchronization level. For weak couplings (small λs), synchronization is fragmentary: segments with steady frequency extend over a few oscillations, outside of which the spectral wave has a large magnitude (note that the oscillon’s amplitude, AK, remains low) and is carried by many embedded frequencies, as indicated by abundance of transient peaks on W-spectrograms (Fig. 6A, right panel). As λ grows, the net amplitude, AK, increases and the segments of synchronicity lengthen, while the embedded oscillations subdue (Fig. 6B). As λ grows further, the embedded frequencies reduce in number and loose magnitudes, notably over the periods of increased synchronicity. As λ gets even higher, the oscillon turns into a simple harmonic, and its spectral wave degenerates into a line (Fig. 6C). Ultimately, spectral undulations get suppressed, as synchronization becomes fully dominant.

Figure 6.
  • Download figure
  • Open in new tab
  • Download powerpoint
Figure 6.

Kuramoto model. 1,000 oscillators (phasors) with base frequencies normally distributed around 8 Hz with the variance 1 Hz, coupled via Equation 7, produce a mean field characterized by a single spectral wave—a solitary Kuramoto oscillon (gray trace in the background, scaled up on the top panel 10 times relative to the other panels, for visibility). On all panels, the instantaneous amplitude is defined by the color scale, as on Figure 4A,B. A, At small couplings, K-oscillon has low amplitude and its spectral wave often reshapes and disrupts (blue boxes). The W-spectrogram (right panel) shows that the embedded frequencies restructure at ∼100 ms timescale. B, as the coupling between phasors grows, the synchronized amplitude builds up and the K-oscillon’s shape regularizes. Note that when the spectral wave flattens out, the oscillon is nearly sinusoidal (strong synchronization, red boxes), and the dynamics of the embedded frequencies during these periods are suppressed (right panel). C, At large couplings, synchronization dominates: the spectral wave narrows, the embedded frequencies die out and the oscillon reduces to a nearly sinusoidal harmonic. D, A hippocampal θ-oscillon’s spectral wave regularizes and the amplitude grows when the rat’s speed is steady (gray dashed line, shifted by ∼80 ms); desynchronization occurs when the speed is low or transient. E, The K-oscillon’s amplitude (orange curve), the magnitude of its spectral wave (purple), and the noise level, ξ (gray), for different coupling strengths. As the system synchronizes (1.7⪅λ⪅3 ), the amplitude grows, while the spectral undulations and the noise subside. At higher couplings noise is nearly fully suppressed.

These observations suggest that the spectral wave’s width (frequency deviation from the mean, Δθ (t) = νθ(t) − νθ,0(t)–modulation depth), may serve as an indicator of the ongoing synchronization level. From this perspective, the fact that both hippocampal and cortical θ-spectral waves are generally wide (±4 Hz, see Figs. 3A,C, 4A), implies that the physiological synchronization level is fairly low.

Also note that Kuramoto oscillons produced by weakly coupled ensembles often exhibit brief periods of regularity, with reduced spectral undulations, usually accompanied by higher amplitudes (Fig. 6A,B). Similar effects are observed in the empirical, physiological oscillons, where higher-synchronicity episodes, lasting about 50–70 ms in cortex and 100–200 ms in the hippocampus, p < 10−4, CI 95% both, favor steady moves. Conversely, intensification of spectral undulations–local desynchronization–tends to co-occur with slowdowns and speed-ups (Fig. 6D, see also Hoffman et al., 2023). Thus, the physiological oscillons’ response to higher speed effectively corresponds to the increase of “local coupling.”

Surprisingly, the Kuramoto model, being fully deterministic, also produces a noise component. At weak couplings, about 10% of the recovered frequencies are stable, while the other 90% exhibit erratic behavior and represent the emerging noise, ξK, small and weakening with growing λ. Importantly, the distinction between noise and regularity is robust: injecting artificial noise, ξ^ , white or colored, into the Kuramoto field, up to ξ^≈10ξK , does not alter the amplitude of the denoised, regular Kuramoto oscillon. As shown in Figure 6E, in the desynchronized state (λ≲2 ), the noise accounts for about 17% of the field, and then nearly disappears as the system synchronizes. In other words, high noise level may also be viewed as a signature of desynchronization, whereas regular, nearly noiseless oscillations dominate in synchronized states. This behavior is also in agreement with the physiological dynamics: as shown in Figure 5, the noise level is lower during active moves, and heightened during quiescence, indicating that synchronization of the hippocampo-cortical network increases during the animal’s activity (Hoffman et al., 2023).

Discussion

The intricate structure of the synchronized extracellular fields can be anatomized using different decomposition techniques. The constituents brought forth by a particular decomposition provide a specific semantics for reasoning about the LFP functions. Being that these semantics may differ substantially, one may inquire which approach better reflects the physical structure of the brain rhythms. The oscillatory nature of LFPs suggests partitioning the signal into Fourier harmonics—an approach that dominates the field since the discovery of the brain waves (Buzsáki, 2011; Buzsáki et al., 2012; Colgin, 2016). However, its is also known that the Fourier techniques obscure the structure of noisy and nonstationary data—precisely the kind of signals that are relevant in biology (Grünbaum, 2003). In particular, these considerations apply to the LFPs, since their constituents—the oscillons—have transient structures enveloped by noise, i.e., are by nature noisy and nonstationary (Perotti et al., 2019; Zobaer et al., 2022).

Since the oscillons are constructed empirically, using a high time-frequency resolution technique, and exhibit stable, reproducible features that dovetail with theoretical models of synchronization, they likely capture the physical architecture of the extracellular fields, whereas the traditional, Fourier-defined brain waves provide approximative descriptions. Thus far, oscillons were observed in rodents’ hippocampal and the cortical LFPs, but similar structure should be expected in generic brain rhythms. Their systematic analyses should help linking electrophysiological data to the synchronization mechanisms and reveal the dynamics of the noise component.

Lastly, the oscillons suggest a fresh vantage point for understanding the principles of information transfer in the hippocampo-cortical network. Traditionally, the coupling of LFP rhythms to neuronal activity is traced through modulations of the brain waves’ amplitudes and phases (Chen et al., 2011; Ahmed and Mehta, 2012; Richard et al., 2013; Zheng et al., 2015; Kropff et al., 2021; Young et al., 2021; Kennedy et al., 2022). In contrast, frequency-modulated (FM) oscillons imply a complementary format, in which a slow-changing mean frequency defines the “channel of communication,” over which the information is carried by the rapid phase and frequency alterations, reflecting fast endogenous dynamics and abrupt external inputs (Ziemer and Tranter, 2010; Zobaer et al., 2022). In other words, Fourier analyses emphasize amplitude modulation (AM), while the DPT decomposition highlights the FM principles of information transfer, carried over several discrete channels (Izhikevich, 1999a, 1999b; Hoppensteadt and Izhikevich, 1997, 1998, 1999). In the specific case of θ-rhythms, the AM-format is important for slower, larger-scale phenomena, e.g., for the couplings between the speed with the steadily changing mean frequencies, amplitudes, narrowing and widening of the θ-band, etc., whereas information about rapid activities may transmit across the hippocampo-cortical network via alterations of the embedded θ-frequencies. The nature of the information carried by frequency-modulated oscillons and the mechanisms by which they couple with neuronal activity remain poorly understood; however, tracking these dynamics could represent a significant direction for future research.

Footnotes

  • The work was supported by NIH grants R01NS110806 (MSZ and YD), R01AG074226 (NL and YD), R01DA054977 (CMD and DJ) and NSF grant 1422438 (CH and YD).

  • The authors declare no competing financial interests.

  • Correspondence should be addressed to Yuri Dabaghian at yuri.a.dabaghian{at}uth.tmc.edu.

SfN exclusive license.

References

  1. ↵
    1. Ahmed O,
    2. Mehta M
    (2012) Running speed alters the frequency of hippocampal gamma oscillations. J Neurosci 32:7373–7383. https://doi.org/10.1523/JNEUROSCI.5110-11.2012 pmid:22623683
    OpenUrlAbstract/FREE Full Text
  2. ↵
    1. Arenas A,
    2. Dáz-Guilera A,
    3. Kurths J,
    4. Moreno Y,
    5. Zhou C
    (2008) Synchronization in complex networks. Phys Rep 469:93–153. https://doi.org/10.1016/j.physrep.2008.09.002
    OpenUrlCrossRef
  3. ↵
    1. Berndt D,
    2. Clifford J
    (1994) Using dynamic time warping to find patterns in time series. In: Proc. 3d Int. Conf. Knowledge Disc & Data Mining, pp 359–370. Seattle, WA: AAAI Press.
  4. ↵
    1. Bessis D
    (1996) Padé approximations in noise filtering. J Comput 66:85–88. https://doi.org/10.1016/0377-0427(95)00177-8
    OpenUrl
  5. ↵
    1. Bessis D,
    2. Perotti L
    (2009) Universal analytic properties of noise: introducing the J-matrix formalism. J Phys A 42:365202. https://doi.org/10.1088/1751-8113/42/36/365202
    OpenUrlCrossRef
  6. ↵
    1. Brandon M,
    2. Bogaard A,
    3. Schultheiss N,
    4. Hasselmo M
    (2013) Segregation of cortical head direction cell assemblies on alternating theta cycles. Nat Neurosci 16:739. https://doi.org/10.1038/nn.3383 pmid:23603709
    OpenUrlCrossRefPubMed
  7. ↵
    1. Brigham E
    (1988) The fast fourier transform and its applications. Englewood Cliffs: Prentice-Hall.
  8. ↵
    1. Burgess N
    (2008) Grid cells and theta as oscillatory interference: theory and predictions. Hippocampus 18:1157–1174. https://doi.org/10.1002/hipo.20518 pmid:19021256
    OpenUrlCrossRefPubMed
  9. ↵
    1. Burgess N,
    2. O’Keefe J
    (2005) The theta rhythm. Hippocampus 15:825–826. https://doi.org/10.1002/hipo.20111
    OpenUrlCrossRefPubMed
  10. ↵
    1. Burgess N,
    2. O’Keefe J
    (2011) Models of place and grid cell firing and theta rhythmicity. Curr Opin Neurobiol 21:734–744. https://doi.org/10.1016/j.conb.2011.07.002 pmid:21820895
    OpenUrlCrossRefPubMed
  11. ↵
    1. Burgess N,
    2. Barry C,
    3. O’Keefe J
    (2007) An oscillatory interference model of grid cell firing. Hippocampus 17:801–812. https://doi.org/10.1002/hipo.20327 pmid:17598147
    OpenUrlCrossRefPubMed
  12. ↵
    1. Burton S,
    2. Ermentrout G,
    3. Urban N
    (2012) Intrinsic heterogeneity in oscillatory dynamics limits correlation-induced neural synchronization. J Neurophys 108:2115–2133. https://doi.org/10.1152/jn.00362.2012 pmid:22815400
    OpenUrlCrossRefPubMed
  13. ↵
    1. Buzsáki G
    (2002) Theta oscillations in the hippocampus. Neuron 33:325–340. https://doi.org/10.1016/s0896-6273(02)00586-x
    OpenUrlCrossRefPubMed
  14. ↵
    1. Buzsáki G
    (2005) Theta rhythm of navigation: link between path integration and landmark navigation, episodic and semantic memory. Hippocampus 15:827–840. https://doi.org/10.1002/hipo.20113
    OpenUrlCrossRefPubMed
  15. ↵
    1. Buzsáki G
    (2011) Rhythms in the brain. New York: Oxford University Press.
  16. ↵
    1. Buzsáki G,
    2. Anastassiou C,
    3. Koch C
    (2012) The origin of extracellular fields and currents—EEG, ECoG, LFP and spikes. Nat Rev Neurosci 13:407–420. https://doi.org/10.1038/nrn3241 pmid:22595786
    OpenUrlCrossRefPubMed
  17. ↵
    1. Chen Z,
    2. Resnik E,
    3. McFarland J,
    4. Sakmann B,
    5. Mehta M
    (2011) Speed controls the amplitude and timing of the hippocampal gamma rhythm. PLoS One 6:e21408. https://doi.org/10.1371/journal.pone.0021408 pmid:21731735
    OpenUrlCrossRefPubMed
  18. ↵
    1. Colgin L
    (2013) Mechanisms and functions of theta rhythms. Annu Rev Neurosci 36:295–312. https://doi.org/10.1146/annurev-neuro-062012-170330
    OpenUrlCrossRefPubMed
  19. ↵
    1. Colgin L
    (2015) Do slow and fast gamma rhythms correspond to distinct functional states in the hippocampal network? Brain Res 1621:309–315. https://doi.org/10.1016/j.brainres.2015.01.005 pmid:25591484
    OpenUrlCrossRefPubMed
  20. ↵
    1. Colgin L
    (2016) Rhythms of the hippocampal network. Nat Rev Neurosci 17:239–249. https://doi.org/10.1038/nrn.2016.21 pmid:26961163
    OpenUrlCrossRefPubMed
  21. ↵
    1. Corduneanu C
    (2009) Almost periodic oscillations and waves. New York: Springer.
  22. ↵
    1. Domenico C,
    2. Haggerty D,
    3. Mou X,
    4. Ji D
    (2021) LSD degrades hippocampal spatial representations and suppresses hippocampal-visual cortical interactions. Cell Reps 36:109714. https://doi.org/10.1016/j.celrep.2021.109714 pmid:34525364
    OpenUrlCrossRefPubMed
  23. ↵
    1. Domnisoru C,
    2. Kinkhabwala A,
    3. Tank D
    (2013) Membrane potential dynamics of grid cells. Nature 495:199–204. https://doi.org/10.1038/nature11973 pmid:23395984
    OpenUrlCrossRefPubMed
  24. ↵
    1. Ermentrout G,
    2. Galán R,
    3. Urban N
    (2008) Reliability, synchrony and noise. Trends Neurosci 31:428. https://doi.org/10.1016/j.tins.2008.06.002 pmid:18603311
    OpenUrlCrossRefPubMed
  25. ↵
    1. Faisal A,
    2. Selen L,
    3. Wolpert D
    (2008) Noise in the nervous system. Nat Rev Neurosci 9:292. https://doi.org/10.1038/nrn2258 pmid:18319728
    OpenUrlCrossRefPubMed
  26. ↵
    1. Giocomo L,
    2. Hasselmo M
    (2008) Computation by oscillations: implications of experimental data for theoretical models of grid cells. Hippocampus 18:1186–1199. https://doi.org/10.1002/hipo.20501 pmid:19021252
    OpenUrlCrossRefPubMed
  27. ↵
    1. Giocomo L,
    2. Zilli E,
    3. Fransén E,
    4. Hasselmo M
    (2007) Temporal frequency of subthreshold oscillations scales with entorhinal grid cell field spacing. Science 315:1719–1722. https://doi.org/10.1126/science.1139207 pmid:17379810
    OpenUrlAbstract/FREE Full Text
  28. ↵
    1. Goutagny R,
    2. Jackson J,
    3. Williams S
    (2009) Self-generated theta oscillations in the hippocampus. Nat Neurosci 12:1491–1493. https://doi.org/10.1038/nn.2440
    OpenUrlCrossRefPubMed
  29. ↵
    1. Grünbaum F
    (2003) The heisenberg inequality for the discrete fourier transform. App Comput Harmon Anal 15:163–167. https://doi.org/10.1016/S1063-5203(03)00033-2
    OpenUrlCrossRef
  30. ↵
    1. Harris KD,
    2. Henze DA,
    3. Hirase H,
    4. Leinekugel X,
    5. Dragoi G,
    6. Czurkó A,
    7. Buzsáki G
    (2002) Spike train dynamics predicts theta-related phase precession in hippocampal pyramidal cells. Nature 417:738–741. https://doi.org/10.1038/nature00808
    OpenUrlCrossRefPubMed
  31. ↵
    1. Hasselmo M,
    2. Giocomo L,
    3. Zilli E
    (2007) Grid cell firing may arise from interference of theta frequency membrane potential oscillations in single neurons. Hippocampus 17:1252–1271. https://doi.org/10.1002/hipo.20374 pmid:17924530
    OpenUrlCrossRefPubMed
  32. ↵
    1. Hoffman C,
    2. Cheng J,
    3. Ji D,
    4. Dabaghian Y
    (2023) Pattern dynamics and stochasticity of the brain rhythms. Proc Natl Acad Sci U S A 120:e2218245120. https://doi.org/10.1073/pnas.2218245120 pmid:36976768
    OpenUrlCrossRefPubMed
  33. ↵
    1. Hoppensteadt F,
    2. Izhikevich E
    (1997) Weakly connected neural networks. New York: Springer.
  34. ↵
    1. Hoppensteadt F,
    2. Izhikevich E
    (1998) Thalamo-cortical interactions modeled by weakly connected oscillators: could the brain use FM radio principles? Biosystems 48:85–94. https://doi.org/10.1016/S0303-2647(98)00053-7
    OpenUrlCrossRefPubMed
  35. ↵
    1. Hoppensteadt F,
    2. Izhikevich E
    (1999) Oscillatory neurocomputers with dynamic connectivity. Phys Rev Lett 82:2983. https://doi.org/10.1103/PhysRevLett.82.2983
    OpenUrlCrossRef
  36. ↵
    1. Huxter J,
    2. Senior T,
    3. Allen K,
    4. Csicsvari J
    (2008) Theta phase-specific codes for two-dimensional position, trajectory and heading in the hippocampus. Nat Neurosci 11:587–594. https://doi.org/10.1038/nn.2106
    OpenUrlCrossRefPubMed
  37. ↵
    1. Izhikevich E
    (1999a) Class 1 neural excitability, conventional synapses, weakly connected networks, and mathematical foundations of pulse-coupled models. IEEE Trans Neur Netw 10:499–507. https://doi.org/10.1109/72.761707
    OpenUrlCrossRef
  38. ↵
    1. Izhikevich E
    (1999b) Weakly pulse-coupled oscillators, FM interactions, synchronization, and oscillatory associative memory. IEEE Trans Neural Netw 10:508–526. https://doi.org/10.1109/72.761708
    OpenUrlCrossRefPubMed
  39. ↵
    1. Jeewajee A,
    2. Barry C,
    3. O’Keefe J,
    4. Burgess N
    (2008) Grid cells and theta as oscillatory interference: electrophysiological data from freely moving rats. Hippocampus 18:1175–1185. https://doi.org/10.1002/hipo.20510 pmid:19021251
    OpenUrlCrossRefPubMed
  40. ↵
    1. Jezek K,
    2. Henriksen E,
    3. Treves A,
    4. Moser E,
    5. Moser M-B
    (2011) Theta-paced flickering between place-cell maps in the hippocampus. Nature 478:246–249. https://doi.org/10.1038/nature10439
    OpenUrlCrossRefPubMed
  41. ↵
    1. Jung R,
    2. Kornmüller A
    (1938) Eine methodik der ableitung iokalisierter potentialschwankungen aus subcorticalen hirngebieten. Arch Psychiat Neruenkr 109:1–30. https://doi.org/10.1007/BF02157817
    OpenUrlCrossRef
  42. ↵
    1. Kennedy J,
    2. Zhou Y,
    3. Qin Y,
    4. Lovett S,
    5. Sheremet A,
    6. Burke S,
    7. Maurer A
    (2022) A direct comparison of theta power and frequency to speed and acceleration. J Neurosci 42:4326–4341. https://doi.org/10.1523/JNEUROSCI.0987-21.2022 pmid:35477905
    OpenUrlAbstract/FREE Full Text
  43. ↵
    1. Kopell N,
    2. Kramer M,
    3. Malerba P,
    4. Whittington M
    (2010) Are different rhythms good for different functions? Front Human Neurosci 4:187. https://doi.org/10.3389/fnhum.2010.00187 pmid:21103019
    OpenUrlCrossRefPubMed
  44. ↵
    1. Kropff E,
    2. Carmichael J,
    3. Moser E,
    4. Moser M-B
    (2021) Frequency of theta rhythm is controlled by acceleration, but not speed, in running rats. Neuron 109:1–11. https://doi.org/10.1016/j.neuron.2021.01.017 pmid:33567253
    OpenUrlCrossRefPubMed
  45. ↵
    1. Kuramoto Y
    (1975) Self-entrainment of a population of coupled non-linear oscillators. In: International Symposium on Mathematical Problems in Theoretical Physics. Lecture Notes in Physics. Vol. 39 (Araki H, ed), Berlin, Heidelberg: Springer. https://doi.org/10.1007/BFb0013365
  46. ↵
    1. Liao X,
    2. Xia Q,
    3. Qian Y,
    4. Zhang L,
    5. Hu G,
    6. Mi Y
    (2011) Pattern formation in oscillatory complex networks consisting of excitable nodes. Phys Rev E 83:056204. https://doi.org/10.1103/PhysRevE.83.056204
    OpenUrlCrossRef
  47. ↵
    1. McDonnell M,
    2. Ward L
    (2011) The benefits of noise in neural systems: bridging theory and experiment. Nat Rev Neurosci 12:415–426. https://doi.org/10.1038/nrn3061
    OpenUrlCrossRefPubMed
  48. ↵
    1. Mi Y,
    2. Liao X,
    3. Huang X,
    4. Zhang L,
    5. Gu W,
    6. Hu G,
    7. Wu S
    (2013) Long-period rhythmic synchronous firing in a scale-free network. Proc Natl Acad Sci 110:E4931–E4936. https://doi.org/10.1073/pnas.1304680110 pmid:24277831
    OpenUrlAbstract/FREE Full Text
  49. ↵
    1. Mizuseki K,
    2. Sirota A,
    3. Pastalkova E,
    4. Buzsáki G
    (2009) Theta oscillations provide temporal windows for local circuit computation in the entorhinal-hippocampal loop. Neuron 64:267–280. https://doi.org/10.1016/j.neuron.2009.08.037 pmid:19874793
    OpenUrlCrossRefPubMed
  50. ↵
    1. Mysin I,
    2. Shubina L
    (2023) Hippocampal non-theta state: the “janus face” of information processing. Front Neural Circuits 17:1134705. https://doi.org/10.3389/fncir.2023.1134705 pmid:36960401
    OpenUrlCrossRefPubMed
  51. ↵
    1. Neamtu R,
    2. Ahsan R,
    3. Rundensteiner EA,
    4. Sarkozy G,
    5. Keogh E,
    6. Dau HA,
    7. Nguyen C,
    8. Lovering C
    (2018) Generalized dynamic time warping: unleashing the warping power hidden in point-wise distances. In: 2018 IEEE 34th International Conference on Data Engineering (ICDE), Paris, France, 2018, pp 521–532. https://doi.org/10.1109/ICDE.2018.00054
    OpenUrl
  52. ↵
    1. O’Keefe J,
    2. Recce M
    (1993) Phase relationship between hippocampal place units and the EEG theta rhythm. Hippocampus 3:317–330. https://doi.org/10.1002/hipo.450030307
    OpenUrlCrossRefPubMed
  53. ↵
    1. Perotti L,
    2. Vrinceanu D,
    3. Bessis D
    (2013) Enhanced frequency resolution in data analysis. Am J Comput Math 3:242. https://doi.org/10.4236/ajcm.2013.33034
    OpenUrlCrossRef
  54. ↵
    1. Perotti L,
    2. Regimbau T,
    3. Vrinceanu D,
    4. Bessis D
    (2014) Identification of gravitational-wave bursts in high noise using padé filtering. Phys Rev D 90:124047. https://doi.org/10.1103/PhysRevD.90.124047
    OpenUrlCrossRef
  55. ↵
    1. Perotti L,
    2. DeVito J,
    3. Bessis D,
    4. Dabaghian Y
    (2019) Discrete spectra of brain rhythms. Sci Reps 9:1105. https://doi.org/10.1038/s41598-018-37196-0 pmid:30692564
    OpenUrlCrossRefPubMed
  56. ↵
    1. Proakis J,
    2. Manolakis D
    (1996) Digital signal processing: principles, algorithms and applications. Upper Saddle River, NJ: Prentice-Hall.
  57. ↵
    1. Restrepo J,
    2. Ott E,
    3. Hunt B
    (2005) Onset of synchronization in large networks of coupled oscillators. Phys Rev E 71:36151. https://doi.org/10.1103/PhysRevE.71.036151
    OpenUrlCrossRef
  58. ↵
    1. Richard GR,
    2. Titiz A,
    3. Tyler A,
    4. Holmes GL,
    5. Scott RC,
    6. Lenck-Santini PP
    (2013) Speed modulation of hippocampal theta-frequency correlates with spatial memory performance. Hippocampus 23:1269–1279. https://doi.org/10.1002/hipo.22164 pmid:23832676
    OpenUrlCrossRefPubMed
  59. ↵
    1. Rowe D,
    2. Nencka A,
    3. Hoffmann R
    (2007) Signal and noise of Fourier reconstructed FMRI data. J Neurosci Methods 159:361–369. https://doi.org/10.1016/j.jneumeth.2006.07.022 pmid:16945421
    OpenUrlCrossRefPubMed
  60. ↵
    1. Sakoe H,
    2. Chiba S
    (1978) Dynamic programming algorithm optimization for spoken word recognition. IEEE Trans Acoust 26:43–49. https://doi.org/10.1109/TASSP.1978.1163055
    OpenUrlCrossRef
  61. ↵
    1. Salvador S,
    2. Chan P
    (2007) Toward accurate dynamic time warping in linear time and space. Int Data Anal 11:561–580. https://doi.org/10.3233/IDA-2007-11508
    OpenUrlCrossRef
  62. ↵
    1. Shay C,
    2. Boardman I,
    3. James N,
    4. Hasselmo M
    (2012) Voltage dependence of subthreshold resonance frequency in layer II of medial entorhinal cortex. Hippocampus 22:1733–1749. https://doi.org/10.1002/hipo.22008 pmid:22368047
    OpenUrlCrossRefPubMed
  63. ↵
    1. Stein R,
    2. Gossen E,
    3. Jones K
    (2005) Neuronalvariability: noise or part of the signal? Nat Rev Neurosci 6:389–397. https://doi.org/10.1038/nrn1668
    OpenUrlCrossRefPubMed
  64. ↵
    1. Strogatz SH
    (2000) From kuramoto to crawford: exploring the onset of synchronization in populations of coupled oscillators. Physica D 143:1. https://doi.org/10.1016/S0167-2789(00)00094-4
    OpenUrlCrossRef
  65. ↵
    1. Thut G,
    2. Miniussi C,
    3. Gross J
    (2012) The functional importance of rhythmic activity in the brain. Curr Biol 22:R658. https://doi.org/10.1016/j.cub.2012.06.061
    OpenUrlCrossRefPubMed
  66. ↵
    1. van Vugt M,
    2. Sederberg P,
    3. Kahana M
    (2007) Comparison of spectral analysis methods for characterizing brain oscillations. J Neurosci Methods 162:49. https://doi.org/10.1016/j.jneumeth.2006.12.004 pmid:17292478
    OpenUrlCrossRefPubMed
  67. ↵
    1. Welch P
    (1967) The use of fast fourier transform for the estimation of power spectra. IEEE Trans Audio Electroacoustics 15:70–73. https://doi.org/10.1109/TAU.1967.1161901
    OpenUrlCrossRef
  68. ↵
    1. Young CK,
    2. Ruan M,
    3. McNaughton N
    (2021) Speed modulation of hippocampal theta frequency and amplitude predicts water maze learning. Hippocampus 31:201–212. https://doi.org/10.1002/hipo.23281
    OpenUrlCrossRefPubMed
  69. ↵
    1. Zheng C,
    2. Bieri K,
    3. Trettel S,
    4. Colgin L
    (2015) The relationship between gamma frequency and running speed differs for slow and fast gamma rhythms in freely behaving rats. Hippocampus 25:924–938. https://doi.org/10.1002/hipo.22415 pmid:25601003
    OpenUrlCrossRefPubMed
  70. ↵
    1. Ziemer R,
    2. Tranter W
    (2010) Principles of communications: systems, modulation, and noise. Hoboken: Hoboken, New Jersey: Wiley.
  71. ↵
    1. Zobaer MS,
    2. Domenico C,
    3. Perotti L,
    4. Ji D,
    5. Dabaghian Y
    (2022) Rapid spectral dynamics in hippocampal oscillons. Front Comput Neurosci 16:880742. https://doi.org/10.3389/fncom.2022.880742 pmid:35757231
    OpenUrlCrossRefPubMed
Back to top

In this issue

The Journal of Neuroscience: 45 (20)
Journal of Neuroscience
Vol. 45, Issue 20
14 May 2025
  • Table of Contents
  • About the Cover
  • Index by author
  • Masthead (PDF)
Email

Thank you for sharing this Journal of Neuroscience article.

NOTE: We request your email address only to inform the recipient that it was you who recommended this article, and that it is not junk mail. We do not retain these email addresses.

Enter multiple addresses on separate lines or separate them with commas.
Theta Oscillons in Behaving Rats
(Your Name) has forwarded a page to you from Journal of Neuroscience
(Your Name) thought you would be interested in this article in Journal of Neuroscience.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Print
View Full Page PDF
Citation Tools
Theta Oscillons in Behaving Rats
M. S. Zobaer, Nastaran Lotfi, Carli M. Domenico, Clarissa Hoffman, Luca Perotti, Daoyun Ji, Yuri Dabaghian
Journal of Neuroscience 14 May 2025, 45 (20) e0164242025; DOI: 10.1523/JNEUROSCI.0164-24.2025

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
Respond to this article
Request Permissions
Share
Theta Oscillons in Behaving Rats
M. S. Zobaer, Nastaran Lotfi, Carli M. Domenico, Clarissa Hoffman, Luca Perotti, Daoyun Ji, Yuri Dabaghian
Journal of Neuroscience 14 May 2025, 45 (20) e0164242025; DOI: 10.1523/JNEUROSCI.0164-24.2025
Twitter logo Facebook logo Mendeley logo
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Jump to section

  • Article
    • Abstract
    • Significance Statement
    • Introduction
    • Methods
    • Results
    • Kuramoto Oscillon
    • Discussion
    • Footnotes
    • References
  • Figures & Data
  • Info & Metrics
  • eLetters
  • Peer Review
  • PDF

Keywords

  • hippocampo-cortical circuit
  • neural synchronization
  • oscillons
  • theta rhythm

Responses to this article

Respond to this article

Jump to comment:

No eLetters have been published for this article.

Related Articles

Cited By...

More in this TOC Section

Research Articles

  • Functional Roles of Gastrin-Releasing Peptide-Producing Neurons in the Suprachiasmatic Nucleus: Insights into Photic Entrainment and Circadian Regulation
  • Brain Topological Changes in Subjective Cognitive Decline and Associations with Amyloid Stages
  • The Functional Anatomy of Nociception: Effective Connectivity in Chronic Pain and Placebo Response
Show more Research Articles

Systems/Circuits

  • Hippocampal Sharp-Wave Ripples Decrease during Physical Actions Including Consummatory Behavior in Immobile Rodents
  • Developmental Olfactory Dysfunction and Abnormal Odor Memory in Immune-Challenged Disc1+/− Mice
  • Functional Roles of Gastrin-Releasing Peptide-Producing Neurons in the Suprachiasmatic Nucleus: Insights into Photic Entrainment and Circadian Regulation
Show more Systems/Circuits
  • Home
  • Alerts
  • Follow SFN on BlueSky
  • Visit Society for Neuroscience on Facebook
  • Follow Society for Neuroscience on Twitter
  • Follow Society for Neuroscience on LinkedIn
  • Visit Society for Neuroscience on Youtube
  • Follow our RSS feeds

Content

  • Early Release
  • Current Issue
  • Issue Archive
  • Collections

Information

  • For Authors
  • For Advertisers
  • For the Media
  • For Subscribers

About

  • About the Journal
  • Editorial Board
  • Privacy Notice
  • Contact
  • Accessibility
(JNeurosci logo)
(SfN logo)

Copyright © 2025 by the Society for Neuroscience.
JNeurosci Online ISSN: 1529-2401

The ideas and opinions expressed in JNeurosci do not necessarily reflect those of SfN or the JNeurosci Editorial Board. Publication of an advertisement or other product mention in JNeurosci should not be construed as an endorsement of the manufacturer’s claims. SfN does not assume any responsibility for any injury and/or damage to persons or property arising from or related to any use of any material contained in JNeurosci.