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Research Articles, Cellular/Molecular

CaMKII drives synaptic maturation by coordinating spine remodeling and receptor segregation via liquid-liquid phase separation

Leah Men Shin Kuo, Pin-Wu Liu, Misa Arizono and Yasunori Hayashi
Journal of Neuroscience 16 October 2025, e0871252025; https://doi.org/10.1523/JNEUROSCI.0871-25.2025
Leah Men Shin Kuo
1Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan
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Pin-Wu Liu
1Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan
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Misa Arizono
1Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan
2The Hakubi Center for Advanced Research, Kyoto University, Kyoto 606-8501, Japan
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Yasunori Hayashi
1Department of Pharmacology, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan
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Abstract

A hallmark of mature excitatory synapses is their localization on dendritic spines, which increase in number and enlarge during development. Recent super-resolution studies have uncovered another key feature of mature synapses—an intricate synaptic nano-architecture. Trans-synaptic nanocolumns align AMPA-type glutamate receptor (AMPAR) nanodomains with presynaptic release sites, ensuring efficient synaptic transmission as neurons mature. However, the mechanism by which these key features of synaptic maturation emerge remains unclear. Ca2+/calmodulin-dependent protein kinase II (CaMKII) is a signaling molecule implicated in regulating excitatory synaptic transmission. Recent findings show CaMKII, beyond its function as a kinase, serves as a structural element through its ability to undergo liquid-liquid phase separation (LLPS). Upon activation in vitro, it segregates AMPAR from NMDA-type glutamate receptors (NMDAR), forming biphasic condensates. Given that CaMKII expression increases during development, we hypothesized that it serves as the driving force behind synaptic maturation. Using super-resolution microscopy and primary hippocampal cultures prepared from embryonic rat pups of both sexes, we found that immature neurons, which express lower levels of CaMKII, exhibit smaller spine density and size, and less-developed AMPAR and NMDAR nanodomain segregation compared to mature neurons. Remarkably, overexpressing CaMKII in immature neurons was sufficient to recapitulate the features of mature synapses, by increasing spine density, size, and receptor nanodomain segregation. Conversely, a single CaMKII mutation (I205K), which prevents LLPS, abolished these effects. Our findings support that CaMKII-mediated LLPS is the driving force shaping the mature synaptic landscape, suggesting a previously overlooked mechanistic link between dendritic spine formation, enlargement, and receptor nanodomain organization.

Significance Statement Mature excitatory synapses exhibit several defining features, including high dendritic spine density, large dendritic spine heads, and presence of trans-synaptic nanocolumns that align AMPA-type glutamate receptors with presynaptic release sites. However, the mechanisms driving the emergence of this mature synaptic architecture remain poorly understood. Using super-resolution microscopy, we found that Ca²⁺/calmodulin-dependent protein kinase II (CaMKII), via liquid-liquid phase separation (LLPS), can single-handedly drive the maturation of synapses from an immature state. These findings highlight a pivotal role for CaMKII-mediated LLPS in synaptic maturation.

Footnotes

  • We thank Dr. Takeo Saneyoshi for providing DNA constructs, Dr. Eric Gouaux for the antibodies used in this study, Dr. Hanna Zieger for advice on dSTORM experiments and Dr. Nozomi Asaoka for comments on statistical analysis. L.K. was supported by the Graduate Program for Medical Innovation, Kyoto University. This work was supported by Grant-in-Aid for Scientific Research JP18H05434, JP20K21462 and JP22K21353, from the MEXT, Japan, The Uehara Memorial Foundation, The Naito Foundation, Research Foundation for Opto-Science and Technology, Novartis Foundation, and The Takeda Science Foundation, HFSP Research Grant RGP0020/2019, JST CREST JPMJCR20E4, AMED Grants JP24zf0127010 and JP25wm0625123h0002 to Y.H., by Grant-in-Aid for Scientific Research JP22K18372, from the MEXT, Japan, JST FOREST JPMJFR2141 and Brain Science Foundation to M.A., and by Grant-in-Aid for Research Activity Start-up (JP24K23243) from JSPS; Narishige Neuroscience Research Foundation; Konica Minolta Science and Technology Foundation; and Hirose Foundation to P.L.

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CaMKII drives synaptic maturation by coordinating spine remodeling and receptor segregation via liquid-liquid phase separation
Leah Men Shin Kuo, Pin-Wu Liu, Misa Arizono, Yasunori Hayashi
Journal of Neuroscience 16 October 2025, e0871252025; DOI: 10.1523/JNEUROSCI.0871-25.2025

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CaMKII drives synaptic maturation by coordinating spine remodeling and receptor segregation via liquid-liquid phase separation
Leah Men Shin Kuo, Pin-Wu Liu, Misa Arizono, Yasunori Hayashi
Journal of Neuroscience 16 October 2025, e0871252025; DOI: 10.1523/JNEUROSCI.0871-25.2025
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