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Research Articles, Behavioral/Cognitive

Gene expression-based lesion-symptom mapping: FOXP2 and language impairments after stroke

Janina Wilmskoetter, Sigfus Kristinsson, Ida Rangus, Natalie Busby, Chris Rorden, Dirk den Ouden, Roger Newman-Norlund, Carolyn Banister, Nicholas Riccardi, Alex Teghipco, Sarah Newman-Norlund, Julius Fridriksson and Leonardo Bonilha
Journal of Neuroscience 7 November 2025, e0413252025; https://doi.org/10.1523/JNEUROSCI.0413-25.2025
Janina Wilmskoetter
1Department of Health and Rehabilitation Sciences, College of Health Professions, Medical University of South Carolina, Charleston, SC 29425, USA
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Sigfus Kristinsson
2Department of Communication Sciences and Disorders, University of South Carolina, Columbia, SC 29208, USA
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Ida Rangus
2Department of Communication Sciences and Disorders, University of South Carolina, Columbia, SC 29208, USA
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Natalie Busby
2Department of Communication Sciences and Disorders, University of South Carolina, Columbia, SC 29208, USA
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Chris Rorden
3Department of Psychology, University of South Carolina, Columbia, SC 29208, USA
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Dirk den Ouden
2Department of Communication Sciences and Disorders, University of South Carolina, Columbia, SC 29208, USA
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Roger Newman-Norlund
2Department of Communication Sciences and Disorders, University of South Carolina, Columbia, SC 29208, USA
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Carolyn Banister
4Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC 29208, USA
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Nicholas Riccardi
3Department of Psychology, University of South Carolina, Columbia, SC 29208, USA
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Alex Teghipco
2Department of Communication Sciences and Disorders, University of South Carolina, Columbia, SC 29208, USA
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Sarah Newman-Norlund
2Department of Communication Sciences and Disorders, University of South Carolina, Columbia, SC 29208, USA
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Julius Fridriksson
2Department of Communication Sciences and Disorders, University of South Carolina, Columbia, SC 29208, USA
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Leonardo Bonilha
5Department of Neurology, University of South Carolina, Columbia 29209, SC, USA
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  • For correspondence: bonilha{at}sc.edu
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Abstract

Chronic language impairments, aphasia, are a common consequence of stroke, yet the factors influencing their severity remain poorly understood. Although lesion location is widely recognized as a key determinant of aphasia severity and recovery, the impact of gene expression within the affected brain regions is largely unexplored. In this proof-of-concept study, we introduce a novel computational approach termed gene-expression lesion-symptom mapping (GLSM). We sought to investigate whether mapping stroke lesions to brain regions with heightened expression of certain genes could offer insights into aphasia severity. For demonstration purposes, we chose the gene FOXP2 due to its controversial yet intriguing relationship with language processing. We applied GLSM to a well-characterized cohort of 91 individuals with chronic aphasia resulting from a left-hemisphere stroke (36 females, 55 males). Our findings revealed that individuals with lesions to left hemispheric language-related areas with high FOXP2 expression presented worse aphasia severity than individuals with left hemispheric, dorsal stream lesions in regions with low FOXP2 expression. Adding FOXP2 gene expression lesion load explained more variance in aphasia severity than lesion load alone. Through GLSM, we introduce a novel perspective on the relationship between brain lesions and functional deficits, shedding light on previously unexplored nuances. Our study underscores the potential of GLSM as a valuable tool in unraveling the intricate mechanisms underlying language impairments post-stroke.

Significance Statement Understanding the factors contributing to chronic language impairments (aphasia) after stroke remains a significant challenge. In this study, we introduce gene-expression lesion-symptom mapping (GLSM), a novel approach that links stroke lesions to brain regions with heightened gene expression. Using a cohort of 91 individuals with chronic aphasia, we demonstrated that lesions in areas with high FOXP2 gene expression are strongly associated with worse language outcomes. Moreover, FOXP2-related genetic variants modulate this relationship. These findings offer critical insights into the neurogenetic mechanisms of aphasia and have the potential to advance personalized rehabilitation strategies for stroke survivors.

Footnotes

  • ↵†These authors contributed equally to this work.

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Gene expression-based lesion-symptom mapping: FOXP2 and language impairments after stroke
Janina Wilmskoetter, Sigfus Kristinsson, Ida Rangus, Natalie Busby, Chris Rorden, Dirk den Ouden, Roger Newman-Norlund, Carolyn Banister, Nicholas Riccardi, Alex Teghipco, Sarah Newman-Norlund, Julius Fridriksson, Leonardo Bonilha
Journal of Neuroscience 7 November 2025, e0413252025; DOI: 10.1523/JNEUROSCI.0413-25.2025

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Gene expression-based lesion-symptom mapping: FOXP2 and language impairments after stroke
Janina Wilmskoetter, Sigfus Kristinsson, Ida Rangus, Natalie Busby, Chris Rorden, Dirk den Ouden, Roger Newman-Norlund, Carolyn Banister, Nicholas Riccardi, Alex Teghipco, Sarah Newman-Norlund, Julius Fridriksson, Leonardo Bonilha
Journal of Neuroscience 7 November 2025, e0413252025; DOI: 10.1523/JNEUROSCI.0413-25.2025
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