Table 4.

Mitochondrial genes enriched for H3K4me3 after betaine treatment

Chromosome	Start	End	p value	Q score	Gene symbol	Longest transcript	Overlap type	Distance to TSS
chr1	161181309	161181359	5.8E-06	0.002	NDUFS2	NM_004550	Intron	12229
chr1	39490993	39491043	5.8E-06	0.002	NDUFS5	NM_004552	Upstream	−949
chr1	111992311	111992361	5.8E-06	0.002	ATP5F1	NM_001688	Intron	593
chr1	217299958	217300008	5.8E-06	0.002	ESRRG (ERRγ)	NM_001134285	Intron	11114
chr2	37463762	37463812	5.8E-06	0.002	NDUFAF7	NM_144736	Intron	5013
chr2	206996739	206996789	5.8E-06	0.002	NDUFS1	NM_001199983	Intron	27479
chr2	42592390	42592440	5.8E-06	0.002	COX7A2L	NM_004718	Upstream	−4059
chr3	120316387	120316437	5.8E-06	0.002	NDUFB4	NM_001168331	Intron	1284
chr3	48644850	48644900	5.8E-06	0.002	UQCRC1	NM_003365	Intron	2223
chr4	140214122	140214172	5.8E-06	0.002	NDUFC1	NM_001184988	Intron	9558
chr4	46912869	46912919	5.8E-06	0.002	COX7B2	NM_130902	Upstream	−1642
chr4	666439	666489	5.8E-06	0.002	ATP5I	NM_007100	Intron	1663
chr5	60254967	60255017	5.8E-06	0.002	NDUFAF2	NM_174889	Intron	14036
chr5	52875692	52875743	8E-09	1E-05	NDUFS4	NM_002495	Intron	19252
chr7	123197493	123197543	5.8E-06	0.002	NDUFA5	NM_005000	CDS-Exon, Intron	440
chr7	1015028	1015078	5.8E-06	0.002	COX19	NM_001031617	CDS-Exon, Intron	182
chr7	99023956	99024006	5.8E-06	0.002	ATP5J2	NM_001198879	Intron	39843
chr7	129261774	129261824	5.8E-06	0.002	NRF1	NM_005011	Intron	10244
chr8	96039143	96039193	5.8E-06	0.002	NDUFAF6	NM_152416	Intron	1954
chr8	100898116	100898166	5.8E-06	0.002	COX6C	NM_004374	Intron	8101
chr9	32567493	32567543	5.8E-06	0.002	NDUFB6	NM_001199987	Intron	5664
chr10	101482899	101482949	5.8E-06	0.002	COX15	NM_078470	Intron	9499
chr10	60148120	60148170	5.8E-06	0.002	TFAM	NM_003201	Intron	3242
chr11	77771397	77771447	5.8E-06	0.002	NDUFC2	NM_001203262	Intron	19843
chr11	47598422	47598472	5.8E-06	0.002	NDUFS3	NM_004551	Upstream	−2115
chr11	67375221	67375271	5.8E-06	0.002	NDUFV1	NM_007103	Intron	923
chr12	95399283	95399355	8E-09	1E-05	NDUFA12	NM_018838	Upstream	−1830
chr12	54067324	54067374	5.8E-06	0.002	ATP5G2	NM_001002031	Intron	3163
chr14	92582652	92582702	5.8E-06	0.002	NDUFB1	NM_004545	Intron	5476
chr14	70811575	70811625	5.8E-06	0.002	COX16	NM_001204090	Intron	14848
chr14	50779994	50780044	5.8E-06	0.002	ATP5S	NR_033761	Intron	972
chr14	76857369	76857419	5.8E-06	0.002	ESRRB (ERRβ)	NM_004452	Intron	31692
chr16	21977385	21977435	5.8E-06	0.002	UQCRC2	NM_003366	Intron	12801
chr16	85838085	85838135	5.8E-06	0.002	COX4I1	NM_001861	Intron	4937
chr16	31441644	31441694	5.8E-06	0.002	COX6A2	NM_005205	Upstream	−1920
chr17	14035990	14036040	5.8E-06	0.002	COX10	NM_001303	Intron	63296
chr17	13964251	13964301	5.8E-06	0.002	COX10-AS1	NR_049718	Intron	8499
chr17	53038289	53038339	5.8E-06	0.002	COX11	NR_027942	Intron	7750
chr19	8389711	8389761	5.8E-06	0.002	NDUFA7	NM_005001	Upstream	−3456
chr19	14681231	14681281	5.8E-06	0.002	NDUFB7	NM_004146	Intron	1633
chr19	36644626	36644676	5.8E-06	0.002	COX7A1	NM_001864	Upstream	−880
chr20	13777570	13777620	5.8E-06	0.002	NDUFAF5	NM_024120	Intron	11923
chr21	44315463	44315513	5.8E-06	0.002	NDUFV3	NM_001001503	Intron	2110
chr21	27105277	27105327	5.8E-06	0.002	ATP5J	NM_001685	Intron	2663
chr22	42495549	42495599	5.8E-06	0.002	NDUFA6-AS1	NR_034118	Intron	8637