Table 1.

Summary of SPR experiments to screen for ApoE-binding sites within the SirT1 promoter sequence

DNA sequence nameDNA sequenceVariantKD ApoE3KD ApoE4KD trx
ApoE binding sequencecagcctccgcccgccacgtgacccgtagtgForwardNSNSNS
ComplementNSNSNS
Double- stranded3 nm3 nmNS
ApoE binding sequence-scrambledccctgcgctgtgccgccaaacctgacgccgForwardNSNSNS
ComplementNSNSNS
Double- strandedNSNSNS
Fragment 2tcctgcccctagcggcctForwardNSNSNS
ComplementNSNSNS
Double- strandedNSNSNS
Fragment 3ggaagctgaForwardNSNSNS
ComplementNSNSNS
Double- strandedNSNSNS
Fragment 4ggcggacgForwardNSNSNS
ComplementNSNSNS
Double- strandedNSNSNS
Fragment 5CcacgtcForwardNSNSNS
ComplementNSNSNS
Double- strandedNSNSNS
Fragment 6ccgccacgtgaForwardNSNSNS
ComplementNSNSNS
Double- strandedNSNSNS
Fragment 7ggtcacgtgForwardNSNSNS
ComplementNSNSNS
Double- strandedNSNSNS
Potential RelA binding sequencegtggaaattccForwardNSNSNS
ComplementNSNSNS
Double- strandedNSNSNS
Potential RelA binding sequence-scrambledgtagagtacactForwardNSNSNS
ComplementNSNSNS
Double- strandedNSNSNS