Dimensionality reduction in neural models: an information-theoretic generalization of spike-triggered average and covariance analysis

J Vis. 2006 Apr 28;6(4):414-28. doi: 10.1167/6.4.9.

Abstract

We describe an information-theoretic framework for fitting neural spike responses with a Linear-Nonlinear-Poisson cascade model. This framework unifies the spike-triggered average (STA) and spike-triggered covariance (STC) approaches to neural characterization and recovers a set of linear filters that maximize mean and variance-dependent information between stimuli and spike responses. The resulting approach has several useful properties, namely, (1) it recovers a set of linear filters sorted according to their informativeness about the neural response; (2) it is both computationally efficient and robust, allowing recovery of multiple linear filters from a data set of relatively modest size; (3) it provides an explicit "default" model of the nonlinear stage mapping the filter responses to spike rate, in the form of a ratio of Gaussians; (4) it is equivalent to maximum likelihood estimation of this default model but also converges to the correct filter estimates whenever the conditions for the consistency of STA or STC analysis are met; and (5) it can be augmented with additional constraints on the filters, such as space-time separability. We demonstrate the effectiveness of the method by applying it to simulated responses of a Hodgkin-Huxley neuron and the recorded extracellular responses of macaque retinal ganglion cells and V1 cells.

MeSH terms

  • Action Potentials*
  • Animals
  • Computer Simulation
  • Information Theory*
  • Likelihood Functions
  • Linear Models
  • Macaca mulatta
  • Models, Neurological*
  • Neurons / physiology*
  • Nonlinear Dynamics
  • Normal Distribution
  • Poisson Distribution
  • Retinal Ganglion Cells / physiology
  • Visual Cortex / physiology