[HTML][HTML] Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners

CJ Oldfield, J Meng, JY Yang, MQ Yang, VN Uversky… - BMC genomics, 2008 - Springer
Background Proteins are involved in many interactions with other proteins leading to networks
that regulate and control a wide variety of physiological processes. Some of these proteins…

[HTML][HTML] The unfoldomics decade: an update on intrinsically disordered proteins

AK Dunker, CJ Oldfield, J Meng, P Romero, JY Yang… - BMC genomics, 2008 - Springer
Background Our first predictor of protein disorder was published just over a decade ago in
the Proceedings of the IEEE International Conference on Neural Networks (Romero P, …

TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder

…, RM Williams, CJ Brown, J Meng… - Protein and peptide …, 2008 - ingentaconnect.com
Intrinsically disordered proteins carry out various biological functions while lacking ordered
secondary and/or tertiary structure. In order to find general intrinsic properties of amino acid …

Mining α-helix-forming molecular recognition features with cross species sequence alignments

Y Cheng, CJ Oldfield, J Meng, P Romero… - Biochemistry, 2007 - ACS Publications
Previously described algorithms for mining α-helix-forming molecular recognition elements (MoREs),
described by Oldfield et al. (Oldfield, CJ, Cheng, Y., Cortese, MS, Brown, CJ, …

Exploring the binding diversity of intrinsically disordered proteins involved in one‐to‐many binding

WL Hsu, CJ Oldfield, B Xue, J Meng, F Huang… - Protein …, 2013 - Wiley Online Library
Molecular recognition features (MoRFs) are intrinsically disordered protein regions that bind
to partners via disorder‐to‐order transitions. In one‐to‐many binding, a single MoRF binds …

Subclassifying disordered proteins by the CH-CDF plot method

F Huang, C Oldfield, J Meng, WL Hsu, B Xue… - Biocomputing …, 2012 - World Scientific
Intrinsically disordered proteins (IDPs) are associated with a wide range of functions. We
suggest that sequence-based subtypes, which we call flavors, may provide the basis for …

[HTML][HTML] Improving protein order-disorder classification using charge-hydropathy plots

F Huang, CJ Oldfield, B Xue, WL Hsu, J Meng, X Liu… - BMC …, 2014 - Springer
Background The earliest whole protein order/disorder predictor (Uversky et al., Proteins, 41:
415-427 (2000)), herein called the charge-hydropathy (CH) plot, was originally developed …

Intrinsic protein disorder and protein-protein interactions

WL Hsu, C Oldfield, J Meng, F Huang, B Xue… - Biocomputing …, 2012 - World Scientific
Intrinsically disordered proteins often bind to more than one partner. In this study, we focused
on 11 sets of complexes in which the same disordered segment becomes bound to two or …

[HTML][HTML] Cardiac sodium channel palmitoylation regulates channel availability and myocyte excitability with implications for arrhythmia generation

Z Pei, Y Xiao, J Meng, A Hudmon… - Nature communications, 2016 - nature.com
Cardiac voltage-gated sodium channels (Nav1.5) play an essential role in regulating cardiac
electric activity by initiating and propagating action potentials in the heart. Altered Nav1.5 …

Dynamical analysis of an optimal velocity model with time-delayed feedback control

Y Jin, J Meng - Communications in Nonlinear Science and Numerical …, 2020 - Elsevier
In this paper, the dynamical behaviors of an optimal velocity model (OVM) with delayed
feedback control of velocity difference is studied. By analyzing the transcendental characteristic …